MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:22.1 nTPM
GTEx:23.2 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:65.8 nTPM
Mouse:125.0 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2666 Male, age 74, left hemisphere 79.4
2019 Male, age 18, unknown 26.1
2586 Male, age 75, left hemisphere 18.5
1827 Male, age 72, unknown 16.3
2219 Male, age 76, both hemispheres 13.4
2411 Female, age 72, unknown 13.0
1870 Female, age 42, unknown 12.6
2828 Female, age 72, unknown 11.6
1833 Male, age 53, unknown 10.7
1830 Male, age 51, unknown 10.2
Dorsal raphe nucleus
nTPM: 17.2
2298 Female, age 72, unknown 27.8
1828 Male, age 53, unknown 18.6
2047 Male, age 72, unknown 16.3
2750 Male, age 76, both hemispheres 13.9
2016 Female, age 72, unknown 9.5
Inferior colliculus
nTPM: 13.0
2097 Female, age 72, unknown 16.5
1890 Male, age 53, unknown 13.5
1848 Female, age 42, unknown 12.8
2849 Male, age 72, unknown 9.4
Median raphe nucleus
nTPM: 17.3
2220 Male, age 76, midline 17.3
Periaquaductal grey, anterior
nTPM: 11.2
1795 Male, age 51, unknown 13.7
1947 Male, age 18, unknown 10.2
2502 Female, age 75, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 10.8
1831 Male, age 72, unknown 13.1
2850 Male, age 76, both hemispheres 12.4
1840 Male, age 53, unknown 11.4
2464 Female, age 72, unknown 6.4
Periaquaductal grey, lateral
nTPM: 10.7
2272 Male, age 74, both hemispheres 12.1
2053 Male, age 18, unknown 11.2
2140 Male, age 76, both hemispheres 8.7
Pretectal area
nTPM: 21.6
1817 Female, age 42, unknown 40.8
1816 Male, age 51, unknown 36.5
1944 Female, age 72, unknown 33.6
2007 Male, age 72, unknown 32.0
1815 Male, age 53, unknown 30.6
2224 Female, age 72, unknown 16.6
2667 Female, age 75, unknown 11.6
2273 Male, age 74, both hemispheres 11.0
2407 Male, age 75, both hemispheres 9.1
2825 Male, age 18, unknown 8.8
2316 Male, age 76, right hemisphere 7.3
Red nucleus
nTPM: 13.6
1821 Female, age 72, unknown 22.9
2785 Male, age 18, unknown 21.5
2725 Female, age 75, unknown 15.1
1954 Female, age 42, unknown 14.0
1865 Male, age 51, unknown 13.2
1904 Male, age 53, unknown 13.0
2588 Male, age 74, left hemisphere 12.8
2503 Female, age 72, unknown 11.9
2769 Male, age 72, unknown 10.6
2823 Male, age 76, right hemisphere 9.5
2227 Male, age 72, unknown 9.4
2584 Male, age 75, left hemisphere 8.8
Substantia nigra
nTPM: 22.1
1916 Female, age 42, unknown 34.8
2409 Female, age 72, unknown 34.8
1889 Female, age 72, unknown 29.7
2241 Male, age 72, unknown 26.0
1851 Male, age 51, unknown 25.6
1941 Male, age 53, unknown 25.4
2699 Male, age 18, unknown 13.9
2665 Male, age 74, both hemispheres 13.4
2590 Female, age 75, unknown 9.5
2583 Male, age 75, right hemisphere 7.9
Superior colliculus
nTPM: 17.5
2668 Female, age 75, unknown 47.1
2087 Female, age 72, unknown 24.7
2261 Male, age 18, unknown 17.6
1895 Male, age 76, right hemisphere 14.3
1913 Female, age 42, unknown 14.1
2587 Male, age 74, left hemisphere 14.1
1796 Male, age 53, unknown 13.6
1995 Male, age 72, unknown 12.1
1839 Male, age 51, unknown 10.1
2664 Male, age 75, both hemispheres 6.9
Ventral tegmental area
nTPM: 19.4
2410 Female, age 72, unknown 37.3
1915 Female, age 42, unknown 21.2
2218 Male, age 76, both hemispheres 19.5
2223 Female, age 72, unknown 14.4
1942 Male, age 51, unknown 13.3
2021 Male, age 53, unknown 10.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.2
Samples: 139

Max nTPM: 97.0
Min nTPM: 7.5
Std nTPM: 14.1
Median nTPM: 18.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 97.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 61.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 43.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 43.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.5
Samples: 4

Max nTPM: 64.0
Min nTPM: 38.0
Sample A Female 64.0
Sample B Female 39.9
Sample C Male 52.0
Sample D Male 38.0
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 85.6
Min nTPM: 41.7
Sample A Female 61.8
Sample B Female 41.7
Sample C Male 85.6
Sample D Male 56.1
Periaqueductal gray
nTPM: 38.7
Samples: 3

Max nTPM: 44.0
Min nTPM: 34.1
Sample B Female 38.1
Sample C Male 44.0
Sample D Male 34.1
Superior colliculi
nTPM: 65.8
Samples: 4

Max nTPM: 86.4
Min nTPM: 52.5
Sample A Female 67.1
Sample B Female 52.5
Sample C Male 86.4
Sample D Male 57.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 125.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.0
Samples: 4

Max nTPM: 129.2
Min nTPM: 119.5
Sample A Male 119.5
Sample B Male 128.1
Sample C Female 129.2
Sample D Female 123.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
68410297 Antisense, RP_041214_01_F04, Mouse strain C57BL/6J (56 days, male) 13.6
71765010 Antisense, RP_050926_02_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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