We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIK3R2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
45.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIK3R2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
231
Samples
Sample
Description
TPM
DO48725
0 years, male, NA, stage:1, alive, 780 days
135.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
87.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
79.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
66.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
52.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
0.9
1027
Tumor
0.7
917
Tumor
0.6
815
Tumor
0.5
943
Tumor
0.5
777
Tumor
0.5
515
Tumor
0.4
434
Normal
0.4
461
Tumor
0.4
925
Tumor
0.4
211
Tumor
0.4
492
Normal
0.4
818
Normal
0.4
432
Normal
0.4
926
Normal
0.4
478
Normal
0.3
983
Tumor
0.3
921
Tumor
0.3
863
Tumor
0.3
365
Tumor
0.3
444
Normal
0.3
545
Tumor
0.3
713
Tumor
0.3
147
Tumor
0.3
472
Normal
0.3
817
Tumor
0.3
617
Tumor
0.3
916
Normal
0.3
862
Normal
0.3
1042
Normal
0.3
384
Normal
0.3
1046
Normal
0.3
311
Tumor
0.3
953
Tumor
0.3
358
Normal
0.3
473
Tumor
0.3
851
Tumor
0.3
964
Normal
0.3
471
Tumor
0.3
513
Tumor
0.3
536
Normal
0.3
918
Normal
0.3
524
Normal
0.3
376
Normal
0.3
436
Normal
0.2
563
Tumor
0.2
332
Normal
0.2
218
Normal
0.2
978
Normal
0.2
366
Normal
0.2
641
Tumor
0.2
568
Normal
0.2
922
Normal
0.2
474
Normal
0.2
462
Normal
0.2
258
Normal
0.2
224
Normal
0.2
864
Normal
0.2
283
Tumor
0.2
923
Tumor
0.2
554
Normal
0.2
312
Normal
0.2
883
Tumor
0.2
271
Tumor
0.2
362
Normal
0.2
195
Tumor
0.2
112
Tumor
0.2
1031
Tumor
0.2
192
Normal
0.2
327
Tumor
0.2
516
Normal
0.2
481
Tumor
0.2
882
Normal
0.2
824
Normal
0.2
954
Normal
0.2
213
Tumor
0.2
463
Tumor
0.2
912
Normal
0.2
518
Normal
0.2
455
Tumor
0.2
368
Normal
0.2
756
Normal
0.2
483
Tumor
0.2
514
Normal
0.2
375
Tumor
0.2
816
Normal
0.2
663
Tumor
0.2
572
Normal
0.2
874
Normal
0.2
468
Normal
0.2
914
Normal
0.2
528
Normal
0.2
146
Normal
0.2
466
Normal
0.2
866
Normal
0.2
222
Normal
0.2
262
Normal
0.2
924
Normal
0.2
618
Normal
0.2
884
Normal
0.2
285
Tumor
0.2
553
Tumor
0.2
484
Normal
0.2
142
Normal
0.2
698
Normal
0.2
1026
Normal
0.2
722
Normal
0.2
415
Tumor
0.2
451
Tumor
0.2
958
Normal
0.1
482
Normal
0.1
628
Normal
0.1
976
Normal
0.1
446
Normal
0.1
868
Normal
0.1
498
Normal
0.1
937
Tumor
0.1
1016
Normal
0.1
188
Normal
0.1
138
Normal
0.1
257
Tumor
0.1
297
Tumor
0.1
268
Normal
0.1
852
Normal
0.1
272
Normal
0.1
212
Normal
0.1
785
Tumor
0.1
558
Normal
0.1
913
Tumor
0.1
858
Normal
0.1
493
Tumor
0.1
467
Tumor
0.1
1014
Normal
0.1
232
Normal
0.1
217
Tumor
0.1
526
Normal
0.1
172
Normal
0.1
538
Normal
0.1
968
Normal
0.1
952
Normal
0.1
361
Tumor
0.1
494
Normal
0.1
533
Tumor
0.1
331
Tumor
0.1
298
Normal
0.1
356
Normal
0.1
627
Tumor
0.1
714
Normal
0.1
635
Tumor
0.1
721
Tumor
0.1
352
Normal
0.1
728
Normal
0.1
328
Normal
0.1
546
Normal
0.1
982
Normal
0.1
878
Normal
0.1
136
Normal
0.1
966
Normal
0.1
394
Normal
0.1
661
Tumor
0.1
132
Normal
0.1
464
Normal
0.1
664
Normal
0.1
527
Tumor
0.1
564
Normal
0.1
431
Tumor
0.1
284
Normal
0.1
148
Normal
0.1
881
Tumor
0.1
162
Normal
0.1
738
Normal
0.1
523
Tumor
0.1
447
Tumor
0.1
196
Normal
0.1
386
Normal
0.1
534
Normal
0.1
666
Normal
0.1
185
Tumor
0.1
396
Normal
0.1
1032
Normal
0.1
742
Normal
0.1
697
Tumor
0.1
141
Tumor
0.0
535
Tumor
0.0
944
Normal
0.0
125
Tumor
0.0
286
Normal
0.0
342
Normal
0.0
1021
Tumor
0.0
537
Tumor
0.0
662
Normal
0.0
865
Tumor
0.0
741
Tumor
0.0
443
Tumor
0.0
755
Tumor
0.0
642
Normal
0.0
278
Normal
0.0
616
Normal
0.0
363
Tumor
0.0
1044
Normal
0.0
416
Normal
0.0
778
Normal
0.0
114
Normal
0.0
364
Normal
0.0
137
Tumor
0.0
984
Normal
0.0
186
Normal
0.0
955
Tumor
0.0
456
Normal
0.0
228
Normal
0.0
724
Normal
0.0
723
Tumor
0.0
126
Normal
0.0
221
Tumor
0.0
354
Normal
0.0
915
Tumor
0.0
1028
Normal
0.0
465
Tumor
0.0
1041
Tumor
0.0
877
Tumor
0.0
517
Tumor
0.0
412
Normal
0.0
161
Tumor
0.0
938
Normal
0.0
786
Normal
0.0
1013
Tumor
0.0
277
Tumor
0.0
1022
Normal
0.0
421
Tumor
0.0
956
Normal
0.0
525
Tumor
0.0
716
Normal
0.0
648
Normal
0.0
314
Normal
0.0
392
Normal
0.0
814
Normal
0.0
813
Tumor
0.0
452
Normal
0.0
388
Normal
0.0
488
Normal
0.0
393
Tumor
0.0
715
Tumor
0.0
867
Tumor
0.0
355
Tumor
0.0
737
Tumor
0.0
428
Normal
-0.1
385
Tumor
-0.1
214
Normal
-0.1
433
Tumor
-0.1
111
Normal
-0.1
861
Tumor
-0.1
353
Tumor
-0.1
574
Normal
-0.1
615
Tumor
-0.1
423
Tumor
-0.1
1015
Tumor
-0.1
1025
Tumor
-0.1
1045
Tumor
-0.1
344
Normal
-0.1
873
Tumor
-0.1
128
Normal
-0.1
383
Tumor
-0.1
727
Tumor
-0.1
477
Tumor
-0.1
981
Tumor
-0.1
1043
Tumor
-0.1
672
Normal
-0.1
696
Normal
-0.1
191
Tumor
-0.1
746
Normal
-0.1
963
Tumor
-0.1
227
Tumor
-0.1
424
Normal
-0.1
422
Normal
-0.1
487
Tumor
-0.1
695
Tumor
-0.1
823
Tumor
-0.1
267
Tumor
-0.1
426
Normal
-0.1
744
Normal
-0.1
671
Tumor
-0.1
127
Tumor
-0.1
414
Normal
-0.1
231
Tumor
-0.1
491
Tumor
-0.2
636
Normal
-0.2
686
Normal
-0.2
343
Tumor
-0.2
911
Tumor
-0.2
223
Tumor
-0.2
124
Normal
-0.2
187
Tumor
-0.2
448
Normal
-0.2
113
Tumor
-0.2
395
Tumor
-0.2
357
Tumor
-0.2
975
Tumor
-0.2
977
Tumor
-0.2
145
Tumor
-0.2
857
Tumor
-0.2
957
Tumor
-0.2
313
Tumor
-0.2
261
Tumor
-0.2
445
Tumor
-0.2
341
Tumor
-0.2
647
Tumor
-0.2
131
Tumor
-0.2
567
Tumor
-0.2
391
Tumor
-0.3
427
Tumor
-0.3
135
Tumor
-0.3
557
Tumor
-0.3
571
Tumor
-0.3
435
Tumor
-0.3
171
Tumor
-0.3
413
Tumor
-0.3
497
Tumor
-0.3
367
Tumor
-0.3
745
Tumor
-0.3
387
Tumor
-0.3
425
Tumor
-0.3
351
Tumor
-0.4
573
Tumor
-0.4
665
Tumor
-0.4
685
Tumor
-0.5
967
Tumor
-0.5
743
Tumor
-0.6
965
Tumor
-0.6
123
Tumor
-0.6
411
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
