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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GCDH is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
164.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
136.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
134.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
124.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
122.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
121.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
105.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
100.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
99.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
94.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
93.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
92.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
92.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
86.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
84.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
84.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
84.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
83.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
82.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
80.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
80.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
79.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
78.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
78.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
77.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
76.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
75.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
75.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
72.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
70.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
69.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
69.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
69.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
68.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
68.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
68.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
68.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
68.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
67.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
67.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
65.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
65.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
65.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
62.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
62.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
59.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
56.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
53.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
53.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
53.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
52.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
51.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
50.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
49.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
49.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
49.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
46.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
45.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
44.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
43.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
43.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
41.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
41.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
39.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
39.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
37.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GCDH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
231
Samples
Sample
Description
TPM
DO45197
0 years, male, NA, stage:2, alive, 1170 days
103.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
95.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
93.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
92.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
81.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
79.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
72.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
65.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
64.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
64.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
58.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
58.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
53.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
53.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
52.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
49.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
48.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
47.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
47.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
46.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
46.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
45.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
45.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
44.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
40.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
40.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
26.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.2
636
Normal
1.2
698
Normal
1.1
342
Normal
1.0
568
Normal
1.0
744
Normal
0.9
648
Normal
0.9
944
Normal
0.9
484
Normal
0.9
546
Normal
0.9
742
Normal
0.9
448
Normal
0.9
616
Normal
0.9
132
Normal
0.8
922
Normal
0.8
468
Normal
0.8
452
Normal
0.8
332
Normal
0.8
723
Tumor
0.8
222
Normal
0.8
148
Normal
0.8
462
Normal
0.8
1014
Normal
0.8
352
Normal
0.8
756
Normal
0.7
414
Normal
0.7
686
Normal
0.7
162
Normal
0.7
394
Normal
0.7
526
Normal
0.7
882
Normal
0.7
627
Tumor
0.7
954
Normal
0.7
396
Normal
0.7
186
Normal
0.7
912
Normal
0.7
964
Normal
0.7
981
Tumor
0.7
172
Normal
0.7
366
Normal
0.7
314
Normal
0.7
915
Tumor
0.7
664
Normal
0.7
258
Normal
0.7
862
Normal
0.6
428
Normal
0.6
924
Normal
0.6
714
Normal
0.6
388
Normal
0.6
1032
Normal
0.6
214
Normal
0.6
696
Normal
0.6
572
Normal
0.6
376
Normal
0.6
534
Normal
0.6
818
Normal
0.6
142
Normal
0.6
392
Normal
0.6
558
Normal
0.6
1022
Normal
0.6
424
Normal
0.6
858
Normal
0.6
554
Normal
0.6
824
Normal
0.6
196
Normal
0.6
1016
Normal
0.6
364
Normal
0.6
494
Normal
0.6
232
Normal
0.5
518
Normal
0.5
564
Normal
0.5
1046
Normal
0.5
358
Normal
0.5
528
Normal
0.5
354
Normal
0.5
976
Normal
0.5
111
Normal
0.5
914
Normal
0.5
286
Normal
0.5
481
Tumor
0.5
426
Normal
0.5
488
Normal
0.5
112
Tumor
0.5
436
Normal
0.5
432
Normal
0.5
368
Normal
0.5
465
Tumor
0.5
422
Normal
0.5
218
Normal
0.5
866
Normal
0.5
356
Normal
0.5
618
Normal
0.5
878
Normal
0.4
884
Normal
0.4
938
Normal
0.4
982
Normal
0.4
482
Normal
0.4
926
Normal
0.4
466
Normal
0.4
136
Normal
0.4
755
Tumor
0.4
464
Normal
0.4
344
Normal
0.4
228
Normal
0.4
727
Tumor
0.4
456
Normal
0.4
978
Normal
0.4
728
Normal
0.4
816
Normal
0.4
1041
Tumor
0.4
472
Normal
0.4
124
Normal
0.4
514
Normal
0.4
412
Normal
0.4
298
Normal
0.4
278
Normal
0.4
312
Normal
0.4
672
Normal
0.4
138
Normal
0.4
628
Normal
0.3
666
Normal
0.3
574
Normal
0.3
386
Normal
0.3
722
Normal
0.3
262
Normal
0.3
1044
Normal
0.3
1026
Normal
0.3
538
Normal
0.3
738
Normal
0.3
716
Normal
0.3
284
Normal
0.3
384
Normal
0.3
642
Normal
0.3
864
Normal
0.3
272
Normal
0.3
431
Tumor
0.3
516
Normal
0.3
446
Normal
0.3
786
Normal
0.3
868
Normal
0.2
952
Normal
0.2
746
Normal
0.2
513
Tumor
0.2
695
Tumor
0.2
416
Normal
0.2
968
Normal
0.2
268
Normal
0.2
261
Tumor
0.2
328
Normal
0.2
918
Normal
0.2
916
Normal
0.2
114
Normal
0.2
911
Tumor
0.2
956
Normal
0.2
224
Normal
0.2
615
Tumor
0.2
146
Normal
0.2
662
Normal
0.1
852
Normal
0.1
126
Normal
0.1
444
Normal
0.1
474
Normal
0.1
362
Normal
0.1
966
Normal
0.1
212
Normal
0.1
958
Normal
0.1
1028
Normal
0.1
478
Normal
0.0
434
Normal
0.0
984
Normal
0.0
127
Tumor
0.0
498
Normal
0.0
123
Tumor
0.0
778
Normal
-0.1
1045
Tumor
-0.1
188
Normal
-0.1
741
Tumor
-0.1
363
Tumor
-0.1
955
Tumor
-0.1
713
Tumor
-0.1
492
Normal
-0.1
227
Tumor
-0.1
145
Tumor
-0.1
1042
Normal
-0.1
851
Tumor
-0.2
217
Tumor
-0.2
365
Tumor
-0.2
267
Tumor
-0.2
874
Normal
-0.3
937
Tumor
-0.3
861
Tumor
-0.3
423
Tumor
-0.3
524
Normal
-0.3
785
Tumor
-0.3
361
Tumor
-0.3
721
Tumor
-0.3
857
Tumor
-0.3
353
Tumor
-0.3
536
Normal
-0.4
1015
Tumor
-0.4
192
Normal
-0.4
873
Tumor
-0.4
665
Tumor
-0.4
141
Tumor
-0.4
415
Tumor
-0.4
967
Tumor
-0.4
137
Tumor
-0.4
113
Tumor
-0.4
171
Tumor
-0.5
447
Tumor
-0.5
341
Tumor
-0.5
557
Tumor
-0.5
195
Tumor
-0.6
977
Tumor
-0.6
943
Tumor
-0.6
571
Tumor
-0.6
413
Tumor
-0.6
451
Tumor
-0.6
433
Tumor
-0.6
517
Tumor
-0.6
647
Tumor
-0.6
1043
Tumor
-0.7
393
Tumor
-0.7
327
Tumor
-0.7
867
Tumor
-0.7
221
Tumor
-0.7
461
Tumor
-0.7
191
Tumor
-0.7
161
Tumor
-0.7
745
Tumor
-0.7
185
Tumor
-0.7
963
Tumor
-0.7
147
Tumor
-0.7
443
Tumor
-0.7
883
Tumor
-0.8
435
Tumor
-0.8
223
Tumor
-0.8
187
Tumor
-0.8
231
Tumor
-0.8
913
Tumor
-0.8
537
Tumor
-0.8
257
Tumor
-0.8
473
Tumor
-0.8
125
Tumor
-0.8
865
Tumor
-0.8
823
Tumor
-0.8
277
Tumor
-0.8
777
Tumor
-0.8
491
Tumor
-0.8
463
Tumor
-0.8
445
Tumor
-0.8
411
Tumor
-0.8
487
Tumor
-0.8
737
Tumor
-0.8
477
Tumor
-0.8
331
Tumor
-0.9
881
Tumor
-0.9
1025
Tumor
-0.9
814
Normal
-0.9
383
Tumor
-0.9
553
Tumor
-0.9
421
Tumor
-0.9
685
Tumor
-0.9
1013
Tumor
-0.9
297
Tumor
-0.9
271
Tumor
-0.9
563
Tumor
-1.0
467
Tumor
-1.0
285
Tumor
-1.0
135
Tumor
-1.0
715
Tumor
-1.0
1031
Tumor
-1.0
515
Tumor
-1.0
925
Tumor
-1.0
663
Tumor
-1.0
641
Tumor
-1.0
483
Tumor
-1.0
427
Tumor
-1.1
965
Tumor
-1.1
743
Tumor
-1.1
493
Tumor
-1.1
395
Tumor
-1.1
863
Tumor
-1.1
311
Tumor
-1.1
313
Tumor
-1.1
921
Tumor
-1.1
697
Tumor
-1.1
357
Tumor
-1.1
877
Tumor
-1.1
635
Tumor
-1.2
355
Tumor
-1.2
391
Tumor
-1.2
213
Tumor
-1.2
387
Tumor
-1.2
983
Tumor
-1.2
351
Tumor
-1.2
975
Tumor
-1.3
813
Tumor
-1.3
923
Tumor
-1.3
917
Tumor
-1.3
617
Tumor
-1.3
724
Normal
-1.3
131
Tumor
-1.3
671
Tumor
-1.4
425
Tumor
-1.4
953
Tumor
-1.4
471
Tumor
-1.4
567
Tumor
-1.4
1027
Tumor
-1.4
455
Tumor
-1.4
525
Tumor
-1.4
815
Tumor
-1.5
527
Tumor
-1.5
573
Tumor
-1.6
367
Tumor
-1.6
545
Tumor
-1.6
211
Tumor
-1.6
343
Tumor
-1.6
817
Tumor
-1.6
385
Tumor
-1.6
523
Tumor
-1.6
375
Tumor
-1.7
497
Tumor
-1.7
957
Tumor
-1.8
1021
Tumor
-1.8
535
Tumor
-1.8
533
Tumor
-1.8
951
Tumor
-1.8
283
Tumor
-1.9
661
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
