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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNPO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNPO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
0.7
125
Tumor
0.7
331
Tumor
0.6
171
Tumor
0.6
277
Tumor
0.6
123
Tumor
0.6
463
Tumor
0.6
375
Tumor
0.6
147
Tumor
0.5
813
Tumor
0.5
351
Tumor
0.5
815
Tumor
0.5
865
Tumor
0.4
1025
Tumor
0.4
965
Tumor
0.4
1013
Tumor
0.4
573
Tumor
0.4
661
Tumor
0.4
983
Tumor
0.4
557
Tumor
0.4
877
Tumor
0.4
445
Tumor
0.4
393
Tumor
0.4
523
Tumor
0.4
267
Tumor
0.4
131
Tumor
0.3
313
Tumor
0.3
271
Tumor
0.3
567
Tumor
0.3
141
Tumor
0.3
545
Tumor
0.3
467
Tumor
0.3
343
Tumor
0.3
113
Tumor
0.3
297
Tumor
0.3
353
Tumor
0.3
665
Tumor
0.3
385
Tumor
0.3
257
Tumor
0.3
187
Tumor
0.3
221
Tumor
0.3
114
Normal
0.3
814
Normal
0.3
413
Tumor
0.3
365
Tumor
0.3
881
Tumor
0.3
434
Normal
0.2
411
Tumor
0.2
217
Tumor
0.2
957
Tumor
0.2
715
Tumor
0.2
135
Tumor
0.2
465
Tumor
0.2
663
Tumor
0.2
367
Tumor
0.2
851
Tumor
0.2
311
Tumor
0.2
967
Tumor
0.2
298
Normal
0.2
395
Tumor
0.2
743
Tumor
0.2
213
Tumor
0.2
427
Tumor
0.2
383
Tumor
0.2
963
Tumor
0.2
433
Tumor
0.2
744
Normal
0.2
314
Normal
0.2
185
Tumor
0.2
641
Tumor
0.2
137
Tumor
0.2
128
Normal
0.2
1026
Normal
0.2
1027
Tumor
0.2
161
Tumor
0.2
192
Normal
0.2
943
Tumor
0.2
126
Normal
0.2
111
Normal
0.2
977
Tumor
0.2
391
Tumor
0.2
1043
Tumor
0.2
443
Tumor
0.2
332
Normal
0.2
425
Tumor
0.2
452
Normal
0.1
491
Tumor
0.1
671
Tumor
0.1
777
Tumor
0.1
362
Normal
0.1
124
Normal
0.1
278
Normal
0.1
1041
Tumor
0.1
342
Normal
0.1
515
Tumor
0.1
376
Normal
0.1
188
Normal
0.1
196
Normal
0.1
191
Tumor
0.1
917
Tumor
0.1
272
Normal
0.1
436
Normal
0.1
456
Normal
0.1
535
Tumor
0.1
741
Tumor
0.1
357
Tumor
0.1
261
Tumor
0.1
127
Tumor
0.1
537
Tumor
0.1
366
Normal
0.1
497
Tumor
0.1
146
Normal
0.1
435
Tumor
0.1
223
Tumor
0.1
214
Normal
0.1
697
Tumor
0.1
451
Tumor
0.1
737
Tumor
0.1
186
Normal
0.1
444
Normal
0.1
344
Normal
0.1
647
Tumor
0.1
685
Tumor
0.1
258
Normal
0.1
312
Normal
0.1
1022
Normal
0.1
195
Tumor
0.1
358
Normal
0.1
913
Tumor
0.1
421
Tumor
0.1
268
Normal
0.1
724
Normal
0.1
136
Normal
0.1
231
Tumor
0.1
1031
Tumor
0.1
148
Normal
0.1
368
Normal
0.0
132
Normal
0.0
341
Tumor
0.0
527
Tumor
0.0
384
Normal
0.0
446
Normal
0.0
386
Normal
0.0
461
Tumor
0.0
914
Normal
0.0
222
Normal
0.0
162
Normal
0.0
262
Normal
0.0
354
Normal
0.0
172
Normal
0.0
785
Tumor
0.0
911
Tumor
0.0
218
Normal
0.0
211
Tumor
0.0
816
Normal
0.0
1015
Tumor
0.0
1016
Normal
0.0
145
Tumor
0.0
615
Tumor
0.0
468
Normal
0.0
553
Tumor
0.0
863
Tumor
0.0
727
Tumor
0.0
742
Normal
0.0
431
Tumor
0.0
1045
Tumor
0.0
976
Normal
0.0
392
Normal
0.0
447
Tumor
0.0
723
Tumor
0.0
361
Tumor
0.0
112
Tumor
0.0
224
Normal
0.0
617
Tumor
0.0
921
Tumor
0.0
138
Normal
0.0
568
Normal
0.0
861
Tumor
0.0
466
Normal
0.0
721
Tumor
0.0
493
Tumor
0.0
824
Normal
0.0
536
Normal
0.0
394
Normal
0.0
745
Tumor
0.0
482
Normal
0.0
352
Normal
0.0
883
Tumor
0.0
874
Normal
0.0
455
Tumor
0.0
635
Tumor
0.0
423
Tumor
0.0
1028
Normal
0.0
232
Normal
-0.1
564
Normal
-0.1
618
Normal
-0.1
738
Normal
-0.1
882
Normal
-0.1
563
Tumor
-0.1
627
Tumor
-0.1
873
Tumor
-0.1
866
Normal
-0.1
227
Tumor
-0.1
728
Normal
-0.1
984
Normal
-0.1
432
Normal
-0.1
867
Tumor
-0.1
1044
Normal
-0.1
422
Normal
-0.1
864
Normal
-0.1
483
Tumor
-0.1
464
Normal
-0.1
672
Normal
-0.1
228
Normal
-0.1
426
Normal
-0.1
662
Normal
-0.1
574
Normal
-0.1
642
Normal
-0.1
1014
Normal
-0.1
546
Normal
-0.1
664
Normal
-0.1
666
Normal
-0.1
786
Normal
-0.1
746
Normal
-0.1
481
Tumor
-0.1
538
Normal
-0.1
686
Normal
-0.1
964
Normal
-0.1
1042
Normal
-0.1
858
Normal
-0.1
912
Normal
-0.1
648
Normal
-0.1
1021
Tumor
-0.1
396
Normal
-0.1
975
Tumor
-0.1
1032
Normal
-0.1
698
Normal
-0.1
714
Normal
-0.1
462
Normal
-0.1
878
Normal
-0.1
284
Normal
-0.1
818
Normal
-0.1
142
Normal
-0.1
472
Normal
-0.1
513
Tumor
-0.1
713
Tumor
-0.1
424
Normal
-0.1
924
Normal
-0.1
862
Normal
-0.1
968
Normal
-0.1
414
Normal
-0.1
448
Normal
-0.1
412
Normal
-0.1
953
Tumor
-0.1
492
Normal
-0.1
696
Normal
-0.1
388
Normal
-0.1
517
Tumor
-0.1
868
Normal
-0.1
966
Normal
-0.1
554
Normal
-0.1
628
Normal
-0.1
916
Normal
-0.1
884
Normal
-0.1
525
Tumor
-0.1
518
Normal
-0.1
923
Tumor
-0.1
958
Normal
-0.1
915
Tumor
-0.2
484
Normal
-0.2
514
Normal
-0.2
387
Tumor
-0.2
473
Tumor
-0.2
636
Normal
-0.2
474
Normal
-0.2
212
Normal
-0.2
528
Normal
-0.2
558
Normal
-0.2
534
Normal
-0.2
695
Tumor
-0.2
918
Normal
-0.2
286
Normal
-0.2
978
Normal
-0.2
498
Normal
-0.2
778
Normal
-0.2
494
Normal
-0.2
1046
Normal
-0.2
982
Normal
-0.2
857
Tumor
-0.2
722
Normal
-0.2
817
Tumor
-0.2
356
Normal
-0.2
283
Tumor
-0.2
926
Normal
-0.2
852
Normal
-0.2
526
Normal
-0.2
478
Normal
-0.2
572
Normal
-0.2
327
Tumor
-0.2
416
Normal
-0.2
328
Normal
-0.2
571
Tumor
-0.2
756
Normal
-0.2
616
Normal
-0.2
981
Tumor
-0.2
716
Normal
-0.2
922
Normal
-0.3
524
Normal
-0.3
471
Tumor
-0.3
488
Normal
-0.3
952
Normal
-0.3
363
Tumor
-0.3
823
Tumor
-0.3
955
Tumor
-0.3
954
Normal
-0.3
428
Normal
-0.3
516
Normal
-0.3
938
Normal
-0.3
944
Normal
-0.3
951
Tumor
-0.3
937
Tumor
-0.3
487
Tumor
-0.3
364
Normal
-0.3
755
Tumor
-0.4
533
Tumor
-0.4
925
Tumor
-0.4
956
Normal
-0.4
415
Tumor
-0.5
477
Tumor
-0.5
355
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
