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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCAT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
133.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
127.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
111.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
101.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
100.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
97.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
92.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
91.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
88.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
87.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
75.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
70.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
70.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
69.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
64.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
64.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
64.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
64.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
63.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
63.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
62.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
59.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
58.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
58.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
56.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
55.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
54.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
52.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
51.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
46.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
43.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
40.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
38.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
38.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
37.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
23.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BCAT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.6
Number of samples
231
Samples
Sample
Description
TPM
DO50840
0 years, male, NA, stage:2, alive, 330 days
110.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
91.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
86.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
75.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
73.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
66.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
57.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
54.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
53.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
53.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
51.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
49.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
48.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
41.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
34.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
3.2
647
Tumor
2.4
487
Tumor
2.3
1027
Tumor
2.2
393
Tumor
2.1
745
Tumor
2.1
411
Tumor
1.9
433
Tumor
1.9
921
Tumor
1.9
227
Tumor
1.8
957
Tumor
1.7
477
Tumor
1.7
427
Tumor
1.7
953
Tumor
1.6
571
Tumor
1.5
525
Tumor
1.5
553
Tumor
1.4
221
Tumor
1.4
567
Tumor
1.4
727
Tumor
1.2
573
Tumor
1.2
1041
Tumor
1.1
517
Tumor
1.1
537
Tumor
1.1
713
Tumor
1.0
257
Tumor
1.0
851
Tumor
0.9
361
Tumor
0.9
1025
Tumor
0.8
431
Tumor
0.8
491
Tumor
0.8
147
Tumor
0.7
873
Tumor
0.7
195
Tumor
0.7
185
Tumor
0.7
283
Tumor
0.7
285
Tumor
0.7
112
Tumor
0.7
341
Tumor
0.7
915
Tumor
0.7
141
Tumor
0.6
483
Tumor
0.6
465
Tumor
0.6
1021
Tumor
0.6
954
Normal
0.5
883
Tumor
0.5
211
Tumor
0.5
123
Tumor
0.5
557
Tumor
0.4
355
Tumor
0.4
865
Tumor
0.4
311
Tumor
0.4
425
Tumor
0.4
923
Tumor
0.4
357
Tumor
0.3
145
Tumor
0.3
223
Tumor
0.3
473
Tumor
0.3
161
Tumor
0.3
663
Tumor
0.3
1031
Tumor
0.3
451
Tumor
0.3
963
Tumor
0.3
937
Tumor
0.3
213
Tumor
0.2
917
Tumor
0.2
741
Tumor
0.2
533
Tumor
0.2
881
Tumor
0.2
192
Normal
0.2
721
Tumor
0.2
447
Tumor
0.2
113
Tumor
0.2
523
Tumor
0.2
384
Normal
0.1
423
Tumor
0.1
191
Tumor
0.1
1045
Tumor
0.1
344
Normal
0.1
481
Tumor
0.1
538
Normal
0.1
925
Tumor
0.1
737
Tumor
0.1
444
Normal
0.1
685
Tumor
0.1
715
Tumor
0.1
697
Tumor
0.1
284
Normal
0.1
421
Tumor
0.1
187
Tumor
0.0
478
Normal
0.0
665
Tumor
0.0
353
Tumor
0.0
327
Tumor
0.0
224
Normal
0.0
277
Tumor
0.0
297
Tumor
0.0
568
Normal
0.0
467
Tumor
0.0
515
Tumor
0.0
1043
Tumor
0.0
376
Normal
0.0
965
Tumor
0.0
686
Normal
0.0
385
Tumor
0.0
574
Normal
0.0
498
Normal
0.0
375
Tumor
0.0
641
Tumor
0.0
415
Tumor
-0.1
524
Normal
-0.1
383
Tumor
-0.1
142
Normal
-0.1
135
Tumor
-0.1
1028
Normal
-0.1
497
Tumor
-0.1
648
Normal
-0.1
395
Tumor
-0.1
386
Normal
-0.1
558
Normal
-0.1
222
Normal
-0.1
526
Normal
-0.1
545
Tumor
-0.1
778
Normal
-0.1
394
Normal
-0.1
696
Normal
-0.1
268
Normal
-0.1
722
Normal
-0.1
172
Normal
-0.1
271
Tumor
-0.1
975
Tumor
-0.1
554
Normal
-0.1
228
Normal
-0.2
862
Normal
-0.2
564
Normal
-0.2
535
Tumor
-0.2
572
Normal
-0.2
492
Normal
-0.2
924
Normal
-0.2
536
Normal
-0.2
413
Tumor
-0.2
983
Tumor
-0.2
1042
Normal
-0.2
468
Normal
-0.2
488
Normal
-0.2
874
Normal
-0.2
786
Normal
-0.2
332
Normal
-0.2
756
Normal
-0.2
982
Normal
-0.2
1022
Normal
-0.2
666
Normal
-0.2
392
Normal
-0.2
516
Normal
-0.2
981
Tumor
-0.2
367
Tumor
-0.3
911
Tumor
-0.3
352
Normal
-0.3
672
Normal
-0.3
714
Normal
-0.3
913
Tumor
-0.3
364
Normal
-0.3
816
Normal
-0.3
217
Tumor
-0.3
343
Tumor
-0.3
662
Normal
-0.3
563
Tumor
-0.3
1032
Normal
-0.3
188
Normal
-0.3
964
Normal
-0.3
428
Normal
-0.3
218
Normal
-0.3
977
Tumor
-0.3
823
Tumor
-0.3
448
Normal
-0.3
286
Normal
-0.3
463
Tumor
-0.3
1026
Normal
-0.3
814
Normal
-0.3
484
Normal
-0.3
432
Normal
-0.3
1044
Normal
-0.3
214
Normal
-0.3
922
Normal
-0.3
914
Normal
-0.4
148
Normal
-0.4
416
Normal
-0.4
126
Normal
-0.4
744
Normal
-0.4
474
Normal
-0.4
368
Normal
-0.4
813
Tumor
-0.4
388
Normal
-0.4
755
Tumor
-0.4
258
Normal
-0.4
354
Normal
-0.4
943
Tumor
-0.4
396
Normal
-0.4
212
Normal
-0.4
412
Normal
-0.4
661
Tumor
-0.4
366
Normal
-0.4
186
Normal
-0.4
331
Tumor
-0.4
527
Tumor
-0.4
196
Normal
-0.4
446
Normal
-0.4
664
Normal
-0.4
466
Normal
-0.4
342
Normal
-0.4
877
Tumor
-0.4
916
Normal
-0.4
494
Normal
-0.4
978
Normal
-0.4
944
Normal
-0.4
746
Normal
-0.4
742
Normal
-0.4
716
Normal
-0.4
878
Normal
-0.4
362
Normal
-0.4
434
Normal
-0.4
546
Normal
-0.4
298
Normal
-0.5
723
Tumor
-0.5
514
Normal
-0.5
852
Normal
-0.5
518
Normal
-0.5
312
Normal
-0.5
146
Normal
-0.5
462
Normal
-0.5
493
Tumor
-0.5
724
Normal
-0.5
1014
Normal
-0.5
472
Normal
-0.5
138
Normal
-0.5
777
Tumor
-0.5
328
Normal
-0.5
436
Normal
-0.5
314
Normal
-0.5
424
Normal
-0.5
984
Normal
-0.5
958
Normal
-0.5
918
Normal
-0.5
356
Normal
-0.5
976
Normal
-0.5
738
Normal
-0.5
272
Normal
-0.5
868
Normal
-0.5
615
Tumor
-0.5
278
Normal
-0.5
162
Normal
-0.5
671
Tumor
-0.5
365
Tumor
-0.5
426
Normal
-0.5
952
Normal
-0.5
1046
Normal
-0.5
528
Normal
-0.5
456
Normal
-0.5
464
Normal
-0.5
414
Normal
-0.6
124
Normal
-0.6
131
Tumor
-0.6
867
Tumor
-0.6
968
Normal
-0.6
966
Normal
-0.6
884
Normal
-0.6
785
Tumor
-0.6
616
Normal
-0.6
128
Normal
-0.6
926
Normal
-0.6
861
Tumor
-0.6
452
Normal
-0.6
358
Normal
-0.6
1016
Normal
-0.6
461
Tumor
-0.6
824
Normal
-0.6
866
Normal
-0.6
864
Normal
-0.6
698
Normal
-0.6
534
Normal
-0.6
728
Normal
-0.6
455
Tumor
-0.6
912
Normal
-0.6
956
Normal
-0.6
137
Tumor
-0.6
422
Normal
-0.6
482
Normal
-0.6
132
Normal
-0.6
114
Normal
-0.7
636
Normal
-0.7
642
Normal
-0.7
628
Normal
-0.7
111
Normal
-0.7
1013
Tumor
-0.7
171
Tumor
-0.7
818
Normal
-0.7
262
Normal
-0.7
127
Tumor
-0.7
857
Tumor
-0.7
232
Normal
-0.7
938
Normal
-0.7
435
Tumor
-0.8
391
Tumor
-0.8
313
Tumor
-0.8
471
Tumor
-0.8
136
Normal
-0.8
882
Normal
-0.8
815
Tumor
-0.8
743
Tumor
-0.8
858
Normal
-0.8
627
Tumor
-0.9
125
Tumor
-0.9
955
Tumor
-0.9
618
Normal
-0.9
445
Tumor
-0.9
443
Tumor
-1.0
513
Tumor
-1.0
363
Tumor
-1.0
1015
Tumor
-1.0
387
Tumor
-1.0
863
Tumor
-1.1
261
Tumor
-1.1
817
Tumor
-1.1
635
Tumor
-1.1
231
Tumor
-1.4
351
Tumor
-1.4
951
Tumor
-1.6
267
Tumor
-1.6
967
Tumor
-1.7
617
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
