MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:63.5 nTPM
GTEx:16.4 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:0.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.6
2666 Male, age 74, left hemisphere 52.7
1833 Male, age 53, unknown 46.0
1830 Male, age 51, unknown 44.8
2019 Male, age 18, unknown 43.1
2828 Female, age 72, unknown 40.9
1870 Female, age 42, unknown 39.2
1827 Male, age 72, unknown 38.6
2411 Female, age 72, unknown 37.2
2586 Male, age 75, left hemisphere 36.4
2219 Male, age 76, both hemispheres 27.3
Dorsal raphe nucleus
nTPM: 49.5
2016 Female, age 72, unknown 54.7
2047 Male, age 72, unknown 53.9
2750 Male, age 76, both hemispheres 53.7
1828 Male, age 53, unknown 45.3
2298 Female, age 72, unknown 40.1
Inferior colliculus
nTPM: 39.9
1890 Male, age 53, unknown 47.8
1848 Female, age 42, unknown 40.2
2849 Male, age 72, unknown 37.5
2097 Female, age 72, unknown 34.2
Median raphe nucleus
nTPM: 45.8
2220 Male, age 76, midline 45.8
Periaquaductal grey, anterior
nTPM: 40.5
1947 Male, age 18, unknown 46.1
1795 Male, age 51, unknown 41.4
2502 Female, age 75, unknown 34.0
Periaquaductal grey, dorsal
nTPM: 44.7
2850 Male, age 76, both hemispheres 49.2
1831 Male, age 72, unknown 48.2
1840 Male, age 53, unknown 43.3
2464 Female, age 72, unknown 38.0
Periaquaductal grey, lateral
nTPM: 58.6
2140 Male, age 76, both hemispheres 63.7
2272 Male, age 74, both hemispheres 62.9
2053 Male, age 18, unknown 49.1
Pretectal area
nTPM: 44.9
2316 Male, age 76, right hemisphere 80.5
2407 Male, age 75, both hemispheres 77.5
2273 Male, age 74, both hemispheres 49.0
1944 Female, age 72, unknown 48.1
2825 Male, age 18, unknown 42.4
2224 Female, age 72, unknown 37.6
2007 Male, age 72, unknown 34.6
1815 Male, age 53, unknown 34.5
2667 Female, age 75, unknown 33.0
1816 Male, age 51, unknown 30.5
1817 Female, age 42, unknown 26.3
Red nucleus
nTPM: 42.1
2823 Male, age 76, right hemisphere 52.0
1865 Male, age 51, unknown 48.2
2584 Male, age 75, left hemisphere 45.4
2769 Male, age 72, unknown 45.2
2227 Male, age 72, unknown 44.7
2588 Male, age 74, left hemisphere 43.7
2725 Female, age 75, unknown 42.7
1904 Male, age 53, unknown 41.1
2503 Female, age 72, unknown 38.3
2785 Male, age 18, unknown 37.9
1954 Female, age 42, unknown 35.7
1821 Female, age 72, unknown 29.9
Substantia nigra
nTPM: 63.5
2665 Male, age 74, both hemispheres 77.3
2699 Male, age 18, unknown 76.2
1916 Female, age 42, unknown 74.2
2590 Female, age 75, unknown 72.3
2583 Male, age 75, right hemisphere 65.2
1851 Male, age 51, unknown 64.9
2241 Male, age 72, unknown 62.8
1941 Male, age 53, unknown 55.0
2409 Female, age 72, unknown 51.9
1889 Female, age 72, unknown 34.7
Superior colliculus
nTPM: 44.0
2664 Male, age 75, both hemispheres 56.0
2668 Female, age 75, unknown 54.7
2587 Male, age 74, left hemisphere 50.5
2087 Female, age 72, unknown 44.7
1796 Male, age 53, unknown 43.7
1995 Male, age 72, unknown 41.3
1839 Male, age 51, unknown 38.0
1895 Male, age 76, right hemisphere 37.4
2261 Male, age 18, unknown 37.1
1913 Female, age 42, unknown 36.8
Ventral tegmental area
nTPM: 59.4
1942 Male, age 51, unknown 66.8
2021 Male, age 53, unknown 65.8
1915 Female, age 42, unknown 65.3
2218 Male, age 76, both hemispheres 59.8
2223 Female, age 72, unknown 55.0
2410 Female, age 72, unknown 43.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 55.9
Min nTPM: 3.9
Std nTPM: 10.4
Median nTPM: 13.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 55.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 55.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 54.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 49.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 43.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 39.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 39.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 39.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 35.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 35.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 34.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.6
FF:10158-103A5 76 years, female 47.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 5.8
Sample C Male 5.0
Sample D Male 5.4
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 5.3
Periaqueductal gray
nTPM: 5.0
Samples: 3

Max nTPM: 5.5
Min nTPM: 4.4
Sample B Female 4.4
Sample C Male 5.5
Sample D Male 5.1
Superior colliculi
nTPM: 4.4
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.5
Sample A Female 4.8
Sample B Female 4.6
Sample C Male 3.5
Sample D Male 4.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.7
Sample A Male 1.1
Sample B Male 0.8
Sample C Female 0.7
Sample D Female 1.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69671678 Antisense, RP_050428_02_A10, Mouse strain C57BL/6J (56 days, male) 0.2

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