HIPPOCAMPAL FORMATION - Expression summary
Mouse brain, Intensity
Hippocampal formationi 		40.456
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:50.9 nTPM
GTEx:12.6 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:1.0 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA041668
Hippocampal formation mean intensity 40.456
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 39.537
Molecular layer of the dentate gyrus 35.350
Granular dentate gyrus 37.417
CA1 - oriens layer 24.761
CA1 - pyramidal layer 33.225
CA1 - radiatum layer 33.900
CA2 - oriens layer 26.302
CA2 - pyramidal layer 34.379
CA2 - radiatum layer 34.122
CA3 - oriens layer 29.451
CA3 - pyramidal layer 36.972
CA3 - radiatum layer 40.456
Stratum lucidum 36.915
Lacunosum moleculare 27.612
Subiculum 23.788

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 50.9
Sample id Sample description nTPM
Hippocampus
nTPM: 40.2
1855 Male, age 76, left hemisphere 48.3
1898 Male, age 80, left hemisphere 41.5
2148 Female, age 91, left hemisphere 39.9
2621 Female, age 67, right hemisphere 39.6
1911 Female, age 85, right hemisphere 38.0
2529 Female, age 94, left hemisphere 34.1
Dentate gyrus
nTPM: 36.6
2010 Male, age 76, both hemispheres 39.3
2530 Female, age 94, left hemisphere 38.5
2246 Female, age 85, both hemispheres 37.2
1927 Female, age 91, both hemispheres 36.8
2531 Female, age 67, both hemispheres 35.2
2528 Male, age 74, both hemispheres 32.5
Entorhinal gyrus
nTPM: 41.9
2613 Female, age 94, left hemisphere 45.5
2764 Male, age 80, right hemisphere 43.2
1787 Male, age 76, left hemisphere 42.1
2686 Male, age 75, right hemisphere 40.6
2117 Female, age 91, right hemisphere 40.4
1938 Female, age 85, left hemisphere 39.3
Hippocampus, CA1
nTPM: 38.4
2082 Female, age 91, right hemisphere 51.0
2045 Male, age 76, both hemispheres 45.1
1873 Female, age 85, both hemispheres 38.5
2527 Male, age 74, both hemispheres 29.9
2749 Male, age 80, left hemisphere 27.4
Hippocampus, CA2
nTPM: 46.2
1940 Female, age 85, left hemisphere 62.3
2437 Female, age 94, left hemisphere 53.6
1963 Male, age 80, left hemisphere 48.8
2113 Female, age 91, right hemisphere 47.8
1892 Male, age 76, both hemispheres 33.5
2249 Male, age 74, both hemispheres 31.4
Hippocampus, CA3
nTPM: 34.6
1891 Female, age 85, both hemispheres 39.5
1867 Male, age 76, both hemispheres 37.1
2861 Female, age 67, both hemispheres 33.7
2436 Male, age 74, both hemispheres 32.9
2620 Female, age 94, left hemisphere 32.8
2137 Male, age 80, left hemisphere 31.5
Parahippocampal cortex
nTPM: 50.9
2250 Female, age 67, right hemisphere 67.7
2622 Female, age 67, right hemisphere 60.9
2532 Female, age 72, left hemisphere 60.1
2018 Male, age 76, both hemispheres 59.9
2693 Female, age 94, both hemispheres 54.3
1933 Female, age 85, both hemispheres 46.0
2245 Female, age 91, both hemispheres 44.9
1990 Female, age 91, right hemisphere 42.5
1850 Male, age 80, both hemispheres 40.8
2692 Male, age 74, both hemispheres 31.6
Perirhinal gyrus
nTPM: 46.3
1841 Female, age 85, right hemisphere 55.0
1847 Female, age 91, left hemisphere 49.9
2521 Female, age 94, right hemisphere 46.9
1794 Male, age 80, right hemisphere 41.4
2848 Male, age 76, right hemisphere 38.2
Subiculum
nTPM: 42.8
2042 Male, age 76, both hemispheres 47.9
2729 Female, age 91, right hemisphere 47.9
2438 Female, age 94, left hemisphere 41.8
1977 Female, age 85, both hemispheres 41.3
2619 Male, age 74, both hemispheres 39.8
1901 Male, age 80, both hemispheres 38.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 12.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.6
Samples: 197

Max nTPM: 47.1
Min nTPM: 1.8
Std nTPM: 7.3
Median nTPM: 11.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 47.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 41.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 40.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 35.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 34.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 33.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 31.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 30.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 28.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 27.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 25.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.6
FF:10169-103B7 60 years, female 51.9
FF:10153-102I9 76 years, female 33.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 5.0
Pig sample Sample description nTPM
Subiculum
nTPM: 5.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.8
Sample A Female 5.3
Sample B Female 5.1
Sample C Male 4.9
Sample D Male 4.8
Dorsal hippocampus
nTPM: 4.3
Samples: 4

Max nTPM: 4.4
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.4
Sample C Male 4.1
Sample D Male 4.4
Entorhinal cortex
nTPM: 5.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.7
Sample A Female 5.3
Sample B Female 4.7
Sample C Male 5.2
Sample D Male 4.8
Ventral hippocampus
nTPM: 4.7
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 4.6
Sample C Male 5.3
Sample D Male 4.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.1
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.1
Sample A Male 0.1
Sample B Male 1.2
Sample C Female 1.7
Sample D Female 1.2
Hippocampal formation
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Male 0.7
Sample B Male 0.9
Sample C Female 0.4
Sample D Female 0.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
69671678 Antisense, RP_050428_02_A10, Mouse strain C57BL/6J (56 days, male) 0.4

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