We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TGFB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
253.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
182.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
145.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
140.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
132.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
113.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
111.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
109.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
85.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
82.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
81.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
66.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
66.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
63.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
53.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
42.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
39.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
30.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TGFB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
231
Samples
Sample
Description
TPM
DO45183
0 years, female, NA, stage:2, dead, 570 days
109.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
102.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
100.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
97.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
75.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
74.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
67.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
64.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
61.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
60.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
59.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
54.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
53.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
51.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
48.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
41.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
39.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.8
421
Tumor
1.7
813
Tumor
1.5
455
Tumor
1.5
535
Tumor
1.5
737
Tumor
1.4
515
Tumor
1.3
671
Tumor
1.3
975
Tumor
1.2
311
Tumor
1.1
135
Tumor
1.1
814
Normal
1.1
917
Tumor
1.1
223
Tumor
1.1
823
Tumor
1.1
617
Tumor
1.0
425
Tumor
0.9
297
Tumor
0.9
536
Normal
0.9
817
Tumor
0.9
661
Tumor
0.9
331
Tumor
0.9
815
Tumor
0.8
478
Normal
0.8
721
Tumor
0.8
525
Tumor
0.8
1045
Tumor
0.8
383
Tumor
0.7
367
Tumor
0.7
375
Tumor
0.7
524
Normal
0.7
545
Tumor
0.7
785
Tumor
0.7
312
Normal
0.7
192
Normal
0.7
963
Tumor
0.6
943
Tumor
0.6
328
Normal
0.6
415
Tumor
0.6
467
Tumor
0.6
213
Tumor
0.6
185
Tumor
0.6
444
Normal
0.5
916
Normal
0.5
355
Tumor
0.5
563
Tumor
0.5
852
Normal
0.5
434
Normal
0.5
1042
Normal
0.5
343
Tumor
0.5
884
Normal
0.5
978
Normal
0.5
538
Normal
0.5
146
Normal
0.4
882
Normal
0.4
187
Tumor
0.4
138
Normal
0.4
388
Normal
0.4
396
Normal
0.4
958
Normal
0.4
713
Tumor
0.4
715
Tumor
0.4
433
Tumor
0.4
283
Tumor
0.4
447
Tumor
0.4
126
Normal
0.4
526
Normal
0.4
327
Tumor
0.3
984
Normal
0.3
394
Normal
0.3
391
Tumor
0.3
332
Normal
0.3
211
Tumor
0.3
191
Tumor
0.3
277
Tumor
0.3
921
Tumor
0.3
278
Normal
0.3
141
Tumor
0.3
498
Normal
0.3
385
Tumor
0.3
483
Tumor
0.3
272
Normal
0.3
137
Tumor
0.3
857
Tumor
0.3
365
Tumor
0.3
514
Normal
0.3
224
Normal
0.3
468
Normal
0.3
188
Normal
0.3
284
Normal
0.3
262
Normal
0.3
516
Normal
0.3
925
Tumor
0.3
1032
Normal
0.3
481
Tumor
0.3
217
Tumor
0.3
874
Normal
0.3
491
Tumor
0.3
724
Normal
0.3
966
Normal
0.2
268
Normal
0.2
492
Normal
0.2
493
Tumor
0.2
716
Normal
0.2
956
Normal
0.2
195
Tumor
0.2
686
Normal
0.2
697
Tumor
0.2
136
Normal
0.2
395
Tumor
0.2
816
Normal
0.2
923
Tumor
0.2
878
Normal
0.2
672
Normal
0.2
386
Normal
0.2
363
Tumor
0.2
232
Normal
0.2
145
Tumor
0.2
628
Normal
0.2
924
Normal
0.2
354
Normal
0.2
1015
Tumor
0.2
416
Normal
0.2
368
Normal
0.2
517
Tumor
0.2
364
Normal
0.2
258
Normal
0.2
446
Normal
0.2
393
Tumor
0.2
361
Tumor
0.2
384
Normal
0.1
124
Normal
0.1
362
Normal
0.1
914
Normal
0.1
314
Normal
0.1
867
Tumor
0.1
366
Normal
0.1
976
Normal
0.1
1044
Normal
0.1
461
Tumor
0.1
212
Normal
0.1
913
Tumor
0.1
862
Normal
0.1
564
Normal
0.1
412
Normal
0.1
427
Tumor
0.1
851
Tumor
0.1
518
Normal
0.1
881
Tumor
0.1
482
Normal
0.1
982
Normal
0.1
641
Tumor
0.1
666
Normal
0.1
918
Normal
0.1
472
Normal
0.1
574
Normal
0.1
392
Normal
0.1
376
Normal
0.1
756
Normal
0.1
1022
Normal
0.0
868
Normal
0.0
616
Normal
0.0
1028
Normal
0.0
866
Normal
0.0
448
Normal
0.0
722
Normal
0.0
125
Tumor
0.0
738
Normal
0.0
627
Tumor
0.0
723
Tumor
0.0
462
Normal
0.0
664
Normal
0.0
132
Normal
0.0
662
Normal
0.0
142
Normal
0.0
912
Normal
0.0
558
Normal
0.0
572
Normal
0.0
456
Normal
0.0
114
Normal
0.0
1046
Normal
0.0
228
Normal
0.0
952
Normal
0.0
746
Normal
0.0
864
Normal
0.0
286
Normal
0.0
474
Normal
0.0
413
Tumor
-0.1
1026
Normal
-0.1
968
Normal
-0.1
1014
Normal
-0.1
818
Normal
-0.1
342
Normal
-0.1
494
Normal
-0.1
214
Normal
-0.1
861
Tumor
-0.1
527
Tumor
-0.1
954
Normal
-0.1
196
Normal
-0.1
353
Tumor
-0.1
553
Tumor
-0.1
218
Normal
-0.1
636
Normal
-0.1
466
Normal
-0.1
778
Normal
-0.1
341
Tumor
-0.1
573
Tumor
-0.1
387
Tumor
-0.1
648
Normal
-0.1
298
Normal
-0.1
926
Normal
-0.1
642
Normal
-0.1
922
Normal
-0.1
111
Normal
-0.2
352
Normal
-0.2
877
Tumor
-0.2
728
Normal
-0.2
471
Tumor
-0.2
161
Tumor
-0.2
356
Normal
-0.2
424
Normal
-0.2
313
Tumor
-0.2
432
Normal
-0.2
786
Normal
-0.2
883
Tumor
-0.2
351
Tumor
-0.2
464
Normal
-0.2
568
Normal
-0.2
1016
Normal
-0.2
863
Tumor
-0.2
422
Normal
-0.2
546
Normal
-0.2
463
Tumor
-0.2
186
Normal
-0.2
938
Normal
-0.2
554
Normal
-0.2
858
Normal
-0.2
953
Tumor
-0.2
436
Normal
-0.2
344
Normal
-0.2
128
Normal
-0.2
222
Normal
-0.2
231
Tumor
-0.2
172
Normal
-0.2
964
Normal
-0.2
742
Normal
-0.3
696
Normal
-0.3
148
Normal
-0.3
528
Normal
-0.3
452
Normal
-0.3
488
Normal
-0.3
414
Normal
-0.3
744
Normal
-0.3
534
Normal
-0.3
615
Tumor
-0.3
665
Tumor
-0.3
162
Normal
-0.3
698
Normal
-0.3
358
Normal
-0.3
685
Tumor
-0.3
112
Tumor
-0.3
271
Tumor
-0.3
1043
Tumor
-0.4
426
Normal
-0.4
714
Normal
-0.4
451
Tumor
-0.4
497
Tumor
-0.4
743
Tumor
-0.4
618
Normal
-0.4
428
Normal
-0.4
261
Tumor
-0.4
411
Tumor
-0.4
257
Tumor
-0.4
113
Tumor
-0.4
944
Normal
-0.4
484
Normal
-0.5
537
Tumor
-0.5
513
Tumor
-0.5
285
Tumor
-0.5
221
Tumor
-0.5
824
Normal
-0.5
695
Tumor
-0.5
977
Tumor
-0.5
951
Tumor
-0.5
443
Tumor
-0.5
423
Tumor
-0.5
955
Tumor
-0.6
915
Tumor
-0.6
1025
Tumor
-0.6
431
Tumor
-0.6
445
Tumor
-0.6
557
Tumor
-0.6
1031
Tumor
-0.6
981
Tumor
-0.6
533
Tumor
-0.6
873
Tumor
-0.6
127
Tumor
-0.6
147
Tumor
-0.7
267
Tumor
-0.7
571
Tumor
-0.7
727
Tumor
-0.7
865
Tumor
-0.8
647
Tumor
-0.8
567
Tumor
-0.8
777
Tumor
-0.8
755
Tumor
-0.8
663
Tumor
-0.8
957
Tumor
-0.8
523
Tumor
-0.9
227
Tumor
-0.9
435
Tumor
-0.9
477
Tumor
-0.9
465
Tumor
-0.9
967
Tumor
-1.0
745
Tumor
-1.0
473
Tumor
-1.0
171
Tumor
-1.0
1013
Tumor
-1.1
911
Tumor
-1.1
357
Tumor
-1.2
487
Tumor
-1.2
635
Tumor
-1.2
937
Tumor
-1.2
123
Tumor
-1.3
741
Tumor
-1.4
965
Tumor
-1.5
131
Tumor
-1.5
1041
Tumor
-1.6
1027
Tumor
-4.0
1021
Tumor
-7.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
