We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC1A5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
469.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
223.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
220.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
187.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
171.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
134.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
124.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
100.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
99.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
97.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
91.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
85.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
85.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
83.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
78.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
70.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
53.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
51.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC1A5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
239.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
180.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
133.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
111.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
100.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
100.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
87.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
85.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
83.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
82.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
74.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
71.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
55.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
44.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
2.2
343
Tumor
2.1
567
Tumor
2.0
983
Tumor
1.8
525
Tumor
1.8
211
Tumor
1.8
917
Tumor
1.7
427
Tumor
1.5
877
Tumor
1.4
285
Tumor
1.3
537
Tumor
1.3
815
Tumor
1.2
573
Tumor
1.2
724
Normal
1.2
943
Tumor
1.2
385
Tumor
1.1
535
Tumor
1.0
493
Tumor
1.0
125
Tumor
0.9
661
Tumor
0.9
953
Tumor
0.9
536
Normal
0.9
367
Tumor
0.8
533
Tumor
0.8
1021
Tumor
0.8
331
Tumor
0.8
192
Normal
0.7
311
Tumor
0.7
497
Tumor
0.6
923
Tumor
0.6
217
Tumor
0.6
413
Tumor
0.6
161
Tumor
0.6
814
Normal
0.6
545
Tumor
0.6
213
Tumor
0.6
737
Tumor
0.6
223
Tumor
0.5
297
Tumor
0.5
433
Tumor
0.5
721
Tumor
0.5
963
Tumor
0.4
671
Tumor
0.4
443
Tumor
0.4
467
Tumor
0.4
743
Tumor
0.4
813
Tumor
0.4
351
Tumor
0.4
524
Normal
0.3
434
Normal
0.3
685
Tumor
0.3
966
Normal
0.3
375
Tumor
0.3
478
Normal
0.3
421
Tumor
0.3
491
Tumor
0.3
387
Tumor
0.3
925
Tumor
0.3
498
Normal
0.3
267
Tumor
0.3
447
Tumor
0.2
978
Normal
0.2
383
Tumor
0.2
444
Normal
0.2
492
Normal
0.2
224
Normal
0.2
313
Tumor
0.2
185
Tumor
0.2
195
Tumor
0.2
916
Normal
0.1
1031
Tumor
0.1
395
Tumor
0.1
958
Normal
0.1
231
Tumor
0.1
361
Tumor
0.1
817
Tumor
0.1
135
Tumor
0.1
218
Normal
0.1
355
Tumor
0.1
883
Tumor
0.1
416
Normal
0.1
483
Tumor
0.1
686
Normal
0.1
262
Normal
0.1
214
Normal
0.1
368
Normal
0.1
364
Normal
0.1
527
Tumor
0.1
951
Tumor
0.1
344
Normal
0.1
298
Normal
0.1
697
Tumor
0.0
268
Normal
0.0
131
Tumor
0.0
446
Normal
0.0
851
Tumor
0.0
391
Tumor
0.0
332
Normal
0.0
965
Tumor
0.0
912
Normal
0.0
823
Tumor
0.0
663
Tumor
0.0
363
Tumor
0.0
445
Tumor
0.0
196
Normal
0.0
538
Normal
0.0
284
Normal
0.0
191
Tumor
0.0
964
Normal
0.0
865
Tumor
-0.1
713
Tumor
-0.1
212
Normal
-0.1
662
Normal
-0.1
976
Normal
-0.1
852
Normal
-0.1
672
Normal
-0.1
188
Normal
-0.1
984
Normal
-0.1
666
Normal
-0.1
471
Tumor
-0.1
954
Normal
-0.1
1028
Normal
-0.1
356
Normal
-0.1
124
Normal
-0.1
785
Tumor
-0.1
884
Normal
-0.1
314
Normal
-0.1
563
Tumor
-0.1
488
Normal
-0.1
1044
Normal
-0.1
572
Normal
-0.1
494
Normal
-0.1
415
Tumor
-0.1
126
Normal
-0.1
516
Normal
-0.1
432
Normal
-0.1
574
Normal
-0.1
526
Normal
-0.1
362
Normal
-0.1
312
Normal
-0.1
1042
Normal
-0.1
1015
Tumor
-0.1
926
Normal
-0.2
716
Normal
-0.2
468
Normal
-0.2
968
Normal
-0.2
456
Normal
-0.2
221
Tumor
-0.2
568
Normal
-0.2
328
Normal
-0.2
922
Normal
-0.2
924
Normal
-0.2
617
Tumor
-0.2
228
Normal
-0.2
222
Normal
-0.2
514
Normal
-0.2
914
Normal
-0.2
1032
Normal
-0.2
857
Tumor
-0.2
564
Normal
-0.2
455
Tumor
-0.2
386
Normal
-0.2
461
Tumor
-0.2
1014
Normal
-0.2
396
Normal
-0.2
352
Normal
-0.2
665
Tumor
-0.2
137
Tumor
-0.2
286
Normal
-0.2
463
Tumor
-0.2
664
Normal
-0.2
517
Tumor
-0.2
394
Normal
-0.2
232
Normal
-0.3
278
Normal
-0.3
786
Normal
-0.3
366
Normal
-0.3
392
Normal
-0.3
227
Tumor
-0.3
967
Tumor
-0.3
138
Normal
-0.3
913
Tumor
-0.3
558
Normal
-0.3
1045
Tumor
-0.3
956
Normal
-0.3
142
Normal
-0.3
141
Tumor
-0.3
546
Normal
-0.3
146
Normal
-0.3
1043
Tumor
-0.3
918
Normal
-0.3
648
Normal
-0.3
778
Normal
-0.3
528
Normal
-0.3
272
Normal
-0.3
756
Normal
-0.3
952
Normal
-0.3
277
Tumor
-0.3
975
Tumor
-0.3
376
Normal
-0.3
187
Tumor
-0.3
114
Normal
-0.3
464
Normal
-0.3
258
Normal
-0.3
482
Normal
-0.3
474
Normal
-0.4
422
Normal
-0.4
412
Normal
-0.4
696
Normal
-0.4
388
Normal
-0.4
384
Normal
-0.4
518
Normal
-0.4
354
Normal
-0.4
365
Tumor
-0.4
1022
Normal
-0.4
982
Normal
-0.4
145
Tumor
-0.4
1016
Normal
-0.4
451
Tumor
-0.4
452
Normal
-0.4
977
Tumor
-0.4
428
Normal
-0.4
816
Normal
-0.4
426
Normal
-0.4
448
Normal
-0.4
957
Tumor
-0.4
342
Normal
-0.4
715
Tumor
-0.4
431
Tumor
-0.4
722
Normal
-0.4
628
Normal
-0.4
484
Normal
-0.4
534
Normal
-0.4
462
Normal
-0.5
981
Tumor
-0.5
472
Normal
-0.5
1026
Normal
-0.5
723
Tumor
-0.5
938
Normal
-0.5
257
Tumor
-0.5
414
Normal
-0.5
873
Tumor
-0.5
557
Tumor
-0.5
861
Tumor
-0.5
136
Normal
-0.5
554
Normal
-0.5
571
Tumor
-0.5
425
Tumor
-0.5
487
Tumor
-0.5
466
Normal
-0.5
882
Normal
-0.5
473
Tumor
-0.5
1041
Tumor
-0.5
714
Normal
-0.5
636
Normal
-0.5
698
Normal
-0.5
162
Normal
-0.6
944
Normal
-0.6
728
Normal
-0.6
513
Tumor
-0.6
515
Tumor
-0.6
357
Tumor
-0.6
358
Normal
-0.6
1025
Tumor
-0.6
955
Tumor
-0.6
341
Tumor
-0.6
818
Normal
-0.6
111
Normal
-0.6
881
Tumor
-0.6
937
Tumor
-0.6
436
Normal
-0.6
128
Normal
-0.6
261
Tumor
-0.6
477
Tumor
-0.6
327
Tumor
-0.6
481
Tumor
-0.6
411
Tumor
-0.6
858
Normal
-0.7
746
Normal
-0.7
824
Normal
-0.7
878
Normal
-0.7
1046
Normal
-0.7
423
Tumor
-0.7
874
Normal
-0.7
113
Tumor
-0.7
921
Tumor
-0.7
635
Tumor
-0.7
862
Normal
-0.7
642
Normal
-0.7
868
Normal
-0.7
915
Tumor
-0.7
777
Tumor
-0.7
424
Normal
-0.7
755
Tumor
-0.8
172
Normal
-0.8
864
Normal
-0.8
148
Normal
-0.8
186
Normal
-0.8
127
Tumor
-0.8
616
Normal
-0.8
1013
Tumor
-0.8
523
Tumor
-0.8
742
Normal
-0.8
647
Tumor
-0.8
393
Tumor
-0.8
553
Tumor
-0.8
618
Normal
-0.9
112
Tumor
-0.9
641
Tumor
-0.9
867
Tumor
-0.9
353
Tumor
-0.9
171
Tumor
-0.9
866
Normal
-0.9
465
Tumor
-1.0
132
Normal
-1.0
627
Tumor
-1.0
271
Tumor
-1.0
745
Tumor
-1.1
615
Tumor
-1.1
695
Tumor
-1.1
1027
Tumor
-1.1
147
Tumor
-1.2
435
Tumor
-1.2
123
Tumor
-1.3
863
Tumor
-1.3
727
Tumor
-1.4
911
Tumor
-1.4
741
Tumor
-1.8
738
Normal
-2.3
744
Normal
-4.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
