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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBCB is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
375.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
310.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
305.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
243.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
191.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
124.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
121.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
121.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
120.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
119.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
115.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
112.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
107.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
106.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
104.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
103.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
102.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
102.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
100.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
98.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
98.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
98.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
97.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
96.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
96.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
93.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
91.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
91.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
90.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
90.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
89.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
88.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
88.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
86.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
85.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
85.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
82.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
81.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
80.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
77.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
77.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
76.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
76.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
76.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
74.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
74.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
73.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
73.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
72.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
71.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
71.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
70.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
70.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
70.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
69.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
69.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
68.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
68.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
67.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
67.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
67.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
67.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
66.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
65.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
64.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
64.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
64.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
64.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
64.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
63.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
62.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
61.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
59.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
59.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
59.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
59.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
59.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
59.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
58.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
57.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
56.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
56.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
55.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
55.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
55.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
55.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
53.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
53.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
53.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
52.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
52.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
51.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
51.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
51.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
50.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
50.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
47.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
46.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
46.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
46.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
46.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
44.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
43.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
42.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
41.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
41.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
41.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
41.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
40.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
40.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
39.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
37.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
36.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
28.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBCB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.4
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
81.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
78.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
78.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
60.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
56.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
51.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
47.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
46.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
46.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
40.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.8
661
Tumor
1.2
567
Tumor
1.2
443
Tumor
1.1
285
Tumor
1.0
341
Tumor
0.8
421
Tumor
0.8
425
Tumor
0.8
125
Tumor
0.8
351
Tumor
0.7
537
Tumor
0.7
297
Tumor
0.7
527
Tumor
0.6
813
Tumor
0.6
387
Tumor
0.6
455
Tumor
0.6
975
Tumor
0.6
431
Tumor
0.5
463
Tumor
0.5
211
Tumor
0.5
647
Tumor
0.5
881
Tumor
0.5
311
Tumor
0.5
331
Tumor
0.5
231
Tumor
0.5
921
Tumor
0.5
395
Tumor
0.4
943
Tumor
0.4
671
Tumor
0.4
185
Tumor
0.4
981
Tumor
0.4
727
Tumor
0.4
357
Tumor
0.4
635
Tumor
0.4
283
Tumor
0.4
137
Tumor
0.4
383
Tumor
0.4
1013
Tumor
0.4
213
Tumor
0.3
695
Tumor
0.3
665
Tumor
0.3
883
Tumor
0.3
447
Tumor
0.3
271
Tumor
0.3
823
Tumor
0.3
483
Tumor
0.3
814
Normal
0.3
536
Normal
0.3
737
Tumor
0.3
217
Tumor
0.3
427
Tumor
0.3
967
Tumor
0.3
393
Tumor
0.3
777
Tumor
0.3
221
Tumor
0.3
445
Tumor
0.3
223
Tumor
0.3
983
Tumor
0.3
112
Tumor
0.3
545
Tumor
0.2
492
Normal
0.2
815
Tumor
0.2
951
Tumor
0.2
192
Normal
0.2
877
Tumor
0.2
873
Tumor
0.2
355
Tumor
0.2
327
Tumor
0.2
755
Tumor
0.2
375
Tumor
0.2
391
Tumor
0.2
385
Tumor
0.2
444
Normal
0.2
465
Tumor
0.2
563
Tumor
0.2
953
Tumor
0.2
1027
Tumor
0.2
415
Tumor
0.2
615
Tumor
0.2
525
Tumor
0.2
513
Tumor
0.1
641
Tumor
0.1
1031
Tumor
0.1
365
Tumor
0.1
187
Tumor
0.1
553
Tumor
0.1
745
Tumor
0.1
917
Tumor
0.1
1021
Tumor
0.1
257
Tumor
0.1
965
Tumor
0.1
386
Normal
0.1
663
Tumor
0.1
1015
Tumor
0.1
863
Tumor
0.1
433
Tumor
0.1
361
Tumor
0.1
741
Tumor
0.1
662
Normal
0.1
145
Tumor
0.1
195
Tumor
0.1
478
Normal
0.1
672
Normal
0.0
923
Tumor
0.0
963
Tumor
0.0
353
Tumor
0.0
471
Tumor
0.0
913
Tumor
0.0
966
Normal
0.0
721
Tumor
0.0
861
Tumor
0.0
915
Tumor
0.0
367
Tumor
0.0
514
Normal
0.0
538
Normal
0.0
191
Tumor
0.0
952
Normal
0.0
785
Tumor
0.0
697
Tumor
0.0
218
Normal
0.0
515
Tumor
0.0
573
Tumor
0.0
958
Normal
0.0
268
Normal
0.0
642
Normal
0.0
461
Tumor
0.0
865
Tumor
0.0
916
Normal
0.0
817
Tumor
0.0
188
Normal
0.0
666
Normal
0.0
911
Tumor
-0.1
232
Normal
-0.1
123
Tumor
-0.1
724
Normal
-0.1
937
Tumor
-0.1
467
Tumor
-0.1
558
Normal
-0.1
627
Tumor
-0.1
557
Tumor
-0.1
394
Normal
-0.1
396
Normal
-0.1
955
Tumor
-0.1
493
Tumor
-0.1
664
Normal
-0.1
384
Normal
-0.1
851
Tumor
-0.1
171
Tumor
-0.1
344
Normal
-0.1
456
Normal
-0.1
434
Normal
-0.1
473
Tumor
-0.1
1044
Normal
-0.1
413
Tumor
-0.1
261
Tumor
-0.1
956
Normal
-0.1
524
Normal
-0.1
392
Normal
-0.1
517
Tumor
-0.1
343
Tumor
-0.1
867
Tumor
-0.1
778
Normal
-0.1
488
Normal
-0.1
272
Normal
-0.1
1025
Tumor
-0.1
224
Normal
-0.1
422
Normal
-0.1
874
Normal
-0.1
574
Normal
-0.1
1028
Normal
-0.1
925
Tumor
-0.1
498
Normal
-0.1
882
Normal
-0.1
352
Normal
-0.1
262
Normal
-0.1
628
Normal
-0.1
571
Tumor
-0.1
884
Normal
-0.1
451
Tumor
-0.1
477
Tumor
-0.1
497
Tumor
-0.1
416
Normal
-0.1
126
Normal
-0.1
428
Normal
-0.1
258
Normal
-0.1
746
Normal
-0.2
146
Normal
-0.2
516
Normal
-0.2
617
Tumor
-0.2
464
Normal
-0.2
982
Normal
-0.2
648
Normal
-0.2
481
Tumor
-0.2
366
Normal
-0.2
414
Normal
-0.2
332
Normal
-0.2
616
Normal
-0.2
312
Normal
-0.2
214
Normal
-0.2
1042
Normal
-0.2
572
Normal
-0.2
1043
Tumor
-0.2
113
Tumor
-0.2
298
Normal
-0.2
267
Tumor
-0.2
388
Normal
-0.2
696
Normal
-0.2
141
Tumor
-0.2
484
Normal
-0.2
554
Normal
-0.2
424
Normal
-0.2
212
Normal
-0.2
715
Tumor
-0.2
535
Tumor
-0.2
738
Normal
-0.2
978
Normal
-0.2
124
Normal
-0.2
816
Normal
-0.2
468
Normal
-0.2
1045
Tumor
-0.2
328
Normal
-0.2
564
Normal
-0.2
728
Normal
-0.2
222
Normal
-0.2
976
Normal
-0.2
968
Normal
-0.2
494
Normal
-0.2
284
Normal
-0.2
354
Normal
-0.2
528
Normal
-0.2
984
Normal
-0.2
162
Normal
-0.2
342
Normal
-0.2
138
Normal
-0.2
924
Normal
-0.2
432
Normal
-0.2
228
Normal
-0.2
1022
Normal
-0.2
411
Tumor
-0.2
716
Normal
-0.2
954
Normal
-0.2
852
Normal
-0.2
426
Normal
-0.2
686
Normal
-0.2
114
Normal
-0.2
412
Normal
-0.2
358
Normal
-0.3
364
Normal
-0.3
466
Normal
-0.3
161
Tumor
-0.3
1014
Normal
-0.3
135
Tumor
-0.3
858
Normal
-0.3
1026
Normal
-0.3
131
Tumor
-0.3
744
Normal
-0.3
423
Tumor
-0.3
448
Normal
-0.3
286
Normal
-0.3
436
Normal
-0.3
1041
Tumor
-0.3
446
Normal
-0.3
227
Tumor
-0.3
518
Normal
-0.3
368
Normal
-0.3
866
Normal
-0.3
474
Normal
-0.3
714
Normal
-0.3
698
Normal
-0.3
362
Normal
-0.3
147
Tumor
-0.3
878
Normal
-0.3
196
Normal
-0.3
912
Normal
-0.3
618
Normal
-0.3
172
Normal
-0.3
526
Normal
-0.3
278
Normal
-0.3
568
Normal
-0.3
314
Normal
-0.3
964
Normal
-0.3
977
Tumor
-0.3
128
Normal
-0.3
918
Normal
-0.3
523
Tumor
-0.3
868
Normal
-0.3
313
Tumor
-0.3
636
Normal
-0.4
944
Normal
-0.4
857
Tumor
-0.4
127
Tumor
-0.4
1032
Normal
-0.4
685
Tumor
-0.4
533
Tumor
-0.4
472
Normal
-0.4
926
Normal
-0.4
136
Normal
-0.4
148
Normal
-0.4
132
Normal
-0.4
546
Normal
-0.4
914
Normal
-0.4
938
Normal
-0.4
922
Normal
-0.4
722
Normal
-0.4
452
Normal
-0.4
491
Tumor
-0.4
756
Normal
-0.4
186
Normal
-0.4
786
Normal
-0.4
142
Normal
-0.4
862
Normal
-0.4
111
Normal
-0.4
1016
Normal
-0.4
435
Tumor
-0.4
723
Tumor
-0.4
1046
Normal
-0.4
376
Normal
-0.4
356
Normal
-0.4
957
Tumor
-0.5
742
Normal
-0.5
277
Tumor
-0.5
363
Tumor
-0.5
824
Normal
-0.5
743
Tumor
-0.5
482
Normal
-0.5
534
Normal
-0.5
864
Normal
-0.5
462
Normal
-0.5
818
Normal
-0.6
713
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
