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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POP4 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
50.3
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
32.8
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
24.5
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
24.5
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
24.1
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
22.7
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
22.6
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
22.4
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
22.2
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
22.1
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
21.4
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
21.2
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
19.7
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
18.0
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
18.0
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
17.9
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
17.9
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
17.7
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
17.0
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
16.7
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
16.4
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
15.9
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
15.4
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
15.4
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
15.3
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
15.0
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
15.0
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
14.7
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
13.9
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
13.9
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
13.7
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
13.6
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
12.9
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
12.7
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
12.6
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
11.4
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
11.3
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
11.1
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
11.1
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
10.9
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
10.7
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
10.5
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
10.5
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
10.2
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
10.0
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
9.9
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
9.6
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
9.5
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
9.4
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
9.2
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
8.5
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
8.0
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
7.8
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
7.6
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
6.7
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
4.9
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
4.8
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
4.7
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
4.1
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
3.3
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
2.3
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
2.3
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
1.8
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POP4 is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
35.4
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
27.6
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
24.7
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
24.1
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
24.0
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
24.0
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
23.6
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
23.2
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
22.6
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
22.5
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
22.0
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
21.9
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
21.8
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
21.4
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
21.3
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
21.3
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
21.0
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
20.9
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
20.9
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
20.6
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
20.3
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
20.0
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
20.0
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
19.9
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
19.9
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
19.9
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
19.7
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
19.6
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
19.5
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
19.5
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
19.3
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
19.3
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
19.2
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
19.2
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
19.1
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
19.0
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
19.0
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
18.8
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
18.7
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
18.6
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
18.6
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
18.5
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
18.4
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
18.3
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
18.3
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
18.3
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
18.2
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
18.1
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
18.0
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
18.0
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
18.0
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
18.0
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
18.0
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
17.9
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
17.9
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
17.9
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
17.9
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
17.8
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
17.7
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
17.7
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
17.7
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
17.6
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
17.6
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
17.6
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
17.5
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
17.5
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
17.5
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
17.5
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
17.4
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
17.4
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
17.3
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
17.3
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
17.2
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
17.1
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
17.1
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
17.1
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
17.1
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
17.1
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
17.0
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
17.0
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
17.0
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
16.9
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
16.8
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
16.8
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
16.8
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
16.8
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
16.7
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
16.7
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
16.7
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
16.7
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
16.7
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
16.6
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
16.6
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
16.6
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
16.5
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
16.5
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
16.5
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
16.5
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
16.5
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
16.4
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
16.4
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
16.4
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
16.4
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
16.4
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
16.4
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
16.3
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
16.3
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
16.3
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
16.3
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
16.3
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
16.2
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
16.2
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
16.2
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
16.1
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
16.1
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
16.1
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
16.0
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
16.0
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
16.0
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
16.0
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
16.0
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
15.9
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
15.9
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
15.9
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
15.8
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
15.8
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
15.8
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
15.8
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
15.8
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
15.7
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
15.7
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
15.7
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
15.6
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
15.6
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
15.6
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
15.6
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
15.5
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
15.5
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
15.5
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
15.4
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
15.4
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
15.3
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
15.3
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
15.3
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
15.3
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
15.2
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
15.2
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
15.2
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
15.2
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
15.1
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
15.1
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
15.1
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
15.1
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
15.1
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
15.1
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
15.1
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
15.1
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
15.0
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
15.0
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
15.0
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
15.0
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
15.0
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
15.0
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
15.0
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
14.9
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
14.9
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
14.9
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
14.8
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
14.8
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
14.8
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
14.7
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
14.7
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
14.7
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
14.7
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
14.7
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
14.6
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
14.6
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
14.6
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
14.6
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
14.6
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
14.6
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
14.6
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
14.6
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
14.5
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
14.5
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
14.5
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
14.4
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
14.4
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
14.4
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
14.4
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
14.4
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
14.3
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
14.3
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
14.3
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
14.2
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
14.2
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
14.1
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
14.1
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
14.0
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
14.0
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
14.0
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
14.0
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
13.9
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
13.9
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
13.9
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
13.9
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
13.9
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
13.9
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
13.9
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
13.9
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
13.9
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
13.8
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
13.8
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
13.8
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
13.8
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
13.8
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
13.8
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
13.7
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
13.7
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
13.7
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
13.7
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
13.7
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
13.7
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
13.7
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
13.6
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
13.6
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
13.6
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
13.5
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
13.5
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
13.5
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
13.4
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
13.4
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
13.4
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
13.4
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
13.4
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
13.3
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
13.3
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
13.3
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
13.3
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
13.2
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
13.2
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
13.1
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
13.1
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
13.1
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
13.1
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
13.1
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
13.1
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
13.1
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
13.0
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
13.0
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
13.0
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
13.0
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
12.9
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
12.8
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
12.8
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
12.8
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
12.8
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
12.7
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
12.7
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
12.7
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
12.6
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
12.6
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
12.6
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
12.6
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
12.5
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
12.5
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
12.5
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
12.5
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
12.5
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
12.4
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
12.4
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
12.4
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
12.4
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
12.3
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
12.3
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
12.3
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
12.3
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
12.3
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
12.2
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
12.2
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
12.2
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
12.2
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
12.2
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
12.2
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
12.1
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
12.1
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
12.1
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
12.1
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
12.1
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
12.1
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
12.1
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
12.0
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
12.0
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
12.0
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
12.0
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
12.0
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
11.9
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
11.9
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
11.9
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
11.9
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
11.9
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
11.9
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
11.9
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
11.9
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
11.9
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
11.9
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
11.9
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
11.8
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
11.8
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
11.8
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
11.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
11.8
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
11.8
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
11.8
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
11.7
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
11.7
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
11.7
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
11.7
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
11.7
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
11.6
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
11.6
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
11.5
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
11.5
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
11.5
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
11.5
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
11.4
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
11.4
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
11.4
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
11.4
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
11.3
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
11.3
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
11.3
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
11.3
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
11.3
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
11.2
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
11.2
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
11.2
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
11.2
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
11.2
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
11.1
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
11.1
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
11.1
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
11.1
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
11.0
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
10.9
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
10.9
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
10.9
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
10.9
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
10.9
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
10.9
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
10.9
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
10.9
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
10.8
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
10.7
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
10.6
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
10.5
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
10.5
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
10.4
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
10.4
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
10.3
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
10.3
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
10.3
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
10.3
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
10.2
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
10.2
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
10.2
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
10.1
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
10.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
10.1
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
10.1
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
10.1
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
10.0
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
10.0
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
10.0
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
10.0
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
9.9
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
9.9
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
9.9
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
9.9
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
9.9
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
9.9
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
9.9
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
9.9
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
9.8
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
9.8
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
9.7
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
9.7
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
9.7
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
9.7
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
9.7
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
9.6
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
9.5
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
9.4
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
9.3
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
9.3
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
9.2
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
9.2
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
9.2
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
9.2
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
9.1
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
9.1
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
9.1
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
9.1
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
9.1
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
9.1
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
9.0
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
8.9
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
8.9
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
8.9
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
8.8
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
8.8
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
8.8
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
8.8
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
8.8
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
8.8
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
8.7
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
8.7
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
8.6
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
8.6
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
8.6
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
8.5
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
8.5
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
8.5
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
8.5
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
8.4
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
8.4
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
8.3
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
8.3
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
8.3
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
8.2
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
8.2
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
8.1
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
8.1
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
8.1
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
8.0
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
8.0
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
7.9
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
7.9
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
7.8
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
7.8
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
7.7
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
7.7
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
7.6
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
7.6
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
7.5
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
7.4
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
7.4
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
7.3
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
7.3
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
7.3
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
7.1
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
7.1
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
7.0
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
7.0
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
7.0
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
6.9
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
6.8
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
6.7
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
6.6
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
6.6
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
6.6
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
6.6
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
6.4
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
6.3
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
6.3
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
6.2
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
6.2
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
6.1
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
6.1
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
6.0
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
6.0
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
5.9
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
5.9
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
5.9
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
5.8
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
5.8
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
5.8
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
5.8
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
5.8
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
5.7
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
5.7
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
5.6
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
5.6
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
5.4
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
5.4
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
5.4
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
5.2
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
5.2
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
5.2
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
5.1
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
4.8
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
4.8
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
4.8
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
4.8
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
4.8
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
4.5
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
4.4
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
4.3
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
4.3
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
4.3
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
4.2
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
4.2
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
4.2
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
4.2
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
4.1
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
4.1
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
4.0
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
3.9
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
3.9
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
3.7
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
3.7
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
3.7
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
3.6
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
3.5
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
3.4
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
3.3
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
3.1
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
2.9
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
2.7
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
2.4
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POP4 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
48.4
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
20.9
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
20.8
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
20.3
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
20.0
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
19.5
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
19.2
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
18.9
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
18.8
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
18.8
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
18.3
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
18.2
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
17.7
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
17.3
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
17.2
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
17.2
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
17.1
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
16.7
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
16.7
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
16.4
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
16.3
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
16.2
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
16.0
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
16.0
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
16.0
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
15.8
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
15.7
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
15.6
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
15.5
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
15.4
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
15.4
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
15.4
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
15.3
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
15.3
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
15.2
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
15.2
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
15.0
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
14.8
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
14.8
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
14.8
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
14.7
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
14.7
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
14.5
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
14.4
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
14.4
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
14.4
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
14.3
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
14.3
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
14.2
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
14.2
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
14.1
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
13.9
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
13.8
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
13.8
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
13.7
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
13.6
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
13.6
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
13.4
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
13.1
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
13.0
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
13.0
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
12.5
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
12.5
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
12.5
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
12.2
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
12.1
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
12.1
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
11.9
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
11.9
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
11.7
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
11.4
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
11.4
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
11.3
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
11.2
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
10.9
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
10.9
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
10.8
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
10.8
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
10.7
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
10.6
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
10.5
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
10.4
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
10.4
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
10.2
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
9.7
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
9.6
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
9.5
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
9.3
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
8.9
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
8.8
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
8.6
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
8.3
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
7.8
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
7.0
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
6.6
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
5.9
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
5.3
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
4.8
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
4.6
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POP4 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
282
Samples
Sample
Description
TPM
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
53.9
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
52.3
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
41.8
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
36.4
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
29.0
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
28.1
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
27.6
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
27.3
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
26.4
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
25.5
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
24.7
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
24.7
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
24.6
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
23.8
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
23.8
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
23.8
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
23.1
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
23.1
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
23.1
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
22.3
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
22.2
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
21.9
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
21.8
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
21.7
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
21.2
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
21.1
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
21.0
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
20.6
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
20.6
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
20.5
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
20.1
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
20.0
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
19.8
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
19.8
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
19.8
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
19.7
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
19.7
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
19.7
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
19.7
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
19.4
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
19.3
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
19.1
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
19.1
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
19.0
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
18.8
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
18.6
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
18.1
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
18.1
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
18.0
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
17.8
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
17.8
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
17.7
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
17.6
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
17.5
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
17.5
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
17.4
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
17.1
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
16.8
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
16.8
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
16.7
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
16.6
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
16.5
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
16.4
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
16.4
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
16.3
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
16.2
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
16.2
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
16.0
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
15.8
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
15.7
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
15.5
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
15.3
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
15.3
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
15.2
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
15.0
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
14.9
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
14.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
14.8
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
14.7
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
14.6
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
14.6
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
14.5
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
14.5
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
14.5
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
14.4
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
14.4
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
14.4
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
14.3
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
14.2
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
14.2
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
14.2
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
14.2
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
14.1
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
14.1
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
14.0
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
14.0
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
13.9
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
13.8
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
13.8
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
13.8
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
13.8
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
13.7
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
13.7
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
13.7
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
13.6
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
13.5
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
13.4
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
13.3
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
13.3
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
13.1
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
13.1
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
13.0
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
12.8
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
12.8
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
12.8
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
12.6
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
12.5
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
12.5
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
12.4
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
12.4
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
12.3
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
12.3
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
12.2
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
12.2
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
12.2
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
12.2
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
12.2
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
12.1
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
12.1
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
11.9
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
11.9
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
11.9
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
11.8
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
11.8
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
11.8
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
11.7
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.7
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
11.6
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
11.4
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
11.4
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
11.4
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
11.4
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
11.4
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
11.3
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
11.2
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
10.9
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
10.8
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
10.7
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
10.7
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
10.7
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
10.7
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
10.7
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
10.7
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
10.6
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
10.6
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
10.6
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
10.5
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
10.4
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
10.4
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
10.4
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
10.3
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
10.3
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
10.3
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
10.3
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
10.3
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
10.2
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
10.1
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
10.1
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
9.9
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
9.9
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
9.8
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
9.8
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
9.7
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
9.6
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
9.5
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
9.5
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
9.4
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
9.3
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
9.3
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
9.2
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
9.2
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
9.2
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
9.2
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
9.1
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
9.1
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
9.1
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
9.0
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
8.9
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
8.8
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
8.8
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
8.8
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
8.8
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
8.7
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
8.7
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
8.6
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
8.5
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
8.5
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
8.5
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
8.4
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
8.4
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
8.3
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
8.2
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
8.2
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
8.2
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
8.1
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
8.0
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
8.0
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
7.8
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
7.8
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
7.8
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
7.7
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
7.7
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
7.6
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
7.5
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
7.4
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
7.3
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
7.3
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
7.2
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
7.1
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
7.0
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
7.0
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
7.0
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
7.0
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
6.8
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
6.8
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
6.5
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
6.5
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
6.4
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
6.4
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
6.3
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
6.3
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
6.2
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
6.2
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
6.0
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
5.9
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
5.8
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
5.8
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
5.7
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
5.6
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
5.5
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
5.4
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
5.1
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
5.1
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
5.1
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
4.9
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
4.8
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
4.8
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
4.8
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
4.7
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
4.6
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
4.4
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
4.4
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
4.4
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
4.4
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
4.2
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
4.2
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
3.7
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
3.6
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
3.5
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
3.4
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
3.4
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
3.0
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
2.9
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
2.8
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
2.8
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
2.8
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
2.8
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
2.7
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
2.5
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
2.3
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
1.5
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
0.0
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
0.0
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
0.0
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
0.0
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
0.0
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
0.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
0.0
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
0.0
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0023350003
Tumor
0.8
CPT0001340003
Tumor
0.8
CPT0088480003
Tumor
0.8
CPT0020120003
Tumor
0.7
CPT0014450004
Tumor
0.7
CPT0024670003
Tumor
0.6
CPT0017850003
Tumor
0.6
CPT0086820003
Tumor
0.6
CPT0010110003
Tumor
0.6
CPT0012180003
Tumor
0.5
CPT0088970003
Tumor
0.5
CPT0077320001
Normal
0.5
CPT0076330003
Tumor
0.5
CPT0007320003
Tumor
0.5
CPT0000640003
Tumor
0.5
CPT0077110003
Tumor
0.5
CPT0086360003
Tumor
0.5
CPT0001260009
Tumor
0.5
CPT0065870003
Tumor
0.4
CPT0086870003
Tumor
0.4
CPT0014160003
Tumor
0.4
CPT0015730003
Tumor
0.4
CPT0078800003
Tumor
0.3
CPT0079410003
Tumor
0.3
CPT0075130003
Tumor
0.3
CPT0001180009
Tumor
0.3
CPT0012670003
Tumor
0.3
CPT0002270011
Tumor
0.3
CPT0081600003
Tumor
0.3
CPT0012570003
Normal
0.3
CPT0079480003
Tumor
0.3
CPT0088690003
Tumor
0.3
CPT0010170001
Normal
0.3
CPT0092190003
Normal
0.3
CPT0069190001
Normal
0.3
CPT0084560003
Tumor
0.3
CPT0075570001
Normal
0.2
CPT0014370004
Tumor
0.2
CPT0092740003
Normal
0.2
CPT0084590001
Normal
0.2
CPT0014350001
Normal
0.2
CPT0089460004
Tumor
0.2
CPT0079180003
Tumor
0.2
CPT0026410003
Tumor
0.2
CPT0092160003
Tumor
0.2
CPT0009060003
Tumor
0.2
CPT0010160003
Tumor
0.2
CPT0025580004
Tumor
0.2
CPT0089480003
Normal
0.2
CPT0017410003
Tumor
0.2
CPT0079270003
Tumor
0.2
CPT0015810003
Tumor
0.2
CPT0001540009
Tumor
0.2
CPT0064400001
Normal
0.2
CPT0065810003
Tumor
0.2
CPT0009000003
Tumor
0.2
CPT0087050003
Normal
0.2
CPT0088640003
Normal
0.2
CPT0078940001
Normal
0.2
CPT0079380003
Tumor
0.2
CPT0065750003
Tumor
0.1
CPT0078930003
Tumor
0.1
CPT0088710001
Normal
0.1
CPT0065430003
Tumor
0.1
CPT0000890001
Normal
0.1
CPT0086970003
Normal
0.1
CPT0006440003
Tumor
0.1
CPT0023690003
Tumor
0.1
CPT0088780001
Normal
0.1
CPT0017450001
Normal
0.1
CPT0079000001
Normal
0.1
CPT0086030003
Tumor
0.1
CPT0081620001
Normal
0.1
CPT0088920001
Normal
0.1
CPT0001220008
Tumor
0.1
CPT0076350001
Normal
0.1
CPT0025290003
Tumor
0.1
CPT0086890003
Normal
0.1
CPT0089020003
Tumor
0.1
CPT0025610001
Normal
0.1
CPT0012370003
Tumor
0.1
CPT0092290003
Tumor
0.1
CPT0065450001
Normal
0.1
CPT0086830003
Normal
0.1
CPT0010120001
Normal
0.1
CPT0085670003
Tumor
0.1
CPT0024680001
Normal
0.1
CPT0081880003
Tumor
0.0
CPT0088500001
Normal
0.0
CPT0012640003
Normal
0.0
CPT0064370003
Tumor
0.0
CPT0002350011
Tumor
0.0
CPT0089040001
Normal
0.0
CPT0025350003
Tumor
0.0
CPT0079510001
Normal
0.0
CPT0007470001
Normal
0.0
CPT0006900003
Tumor
0.0
CPT0066470004
Tumor
0.0
CPT0078990003
Tumor
0.0
CPT0082010001
Normal
0.0
CPT0012080003
Tumor
0.0
CPT0086370003
Normal
0.0
CPT0088630003
Tumor
0.0
CPT0077500001
Normal
0.0
CPT0000790001
Normal
0.0
CPT0078660003
Tumor
0.0
CPT0021240003
Tumor
0.0
CPT0075560003
Tumor
0.0
CPT0025170003
Tumor
0.0
CPT0000660001
Normal
0.0
CPT0019130003
Tumor
0.0
CPT0001350001
Normal
0.0
CPT0066430001
Normal
0.0
CPT0025050003
Tumor
0.0
CPT0019160001
Normal
0.0
CPT0075720003
Tumor
0.0
CPT0078840001
Normal
0.0
CPT0025110003
Tumor
0.0
CPT0014130001
Normal
0.0
CPT0012090003
Normal
0.0
CPT0088570001
Normal
0.0
CPT0066480003
Tumor
0.0
CPT0006530001
Normal
0.0
CPT0014470001
Normal
0.0
CPT0078830003
Tumor
0.0
CPT0023710001
Normal
-0.1
CPT0002370001
Normal
-0.1
CPT0013790003
Normal
-0.1
CPT0001190001
Normal
-0.1
CPT0025230003
Tumor
-0.1
CPT0020020001
Normal
-0.1
CPT0075170001
Normal
-0.1
CPT0092800003
Normal
-0.1
CPT0079430001
Normal
-0.1
CPT0078510003
Tumor
-0.1
CPT0092310003
Normal
-0.1
CPT0011410003
Tumor
-0.1
CPT0012280003
Tumor
-0.1
CPT0063320003
Tumor
-0.1
CPT0086950003
Tumor
-0.1
CPT0025880003
Tumor
-0.1
CPT0079300001
Normal
-0.1
CPT0065820001
Normal
-0.1
CPT0001510001
Normal
-0.1
CPT0011240003
Tumor
-0.1
CPT0077140001
Normal
-0.1
CPT0081990003
Tumor
-0.1
CPT0006950001
Normal
-0.1
CPT0078670001
Normal
-0.1
CPT0023360001
Normal
-0.1
CPT0006730001
Normal
-0.1
CPT0001500009
Tumor
-0.1
CPT0001270001
Normal
-0.1
CPT0012770003
Normal
-0.1
CPT0063640001
Normal
-0.1
CPT0015910003
Tumor
-0.1
CPT0000780007
Tumor
-0.1
CPT0001550001
Normal
-0.1
CPT0088550004
Tumor
-0.2
CPT0071150004
Tumor
-0.2
CPT0025060001
Normal
-0.2
CPT0009080003
Normal
-0.2
CPT0063330001
Normal
-0.2
CPT0066520001
Normal
-0.2
CPT0026420001
Normal
-0.2
CPT0077310003
Tumor
-0.2
CPT0000870016
Tumor
-0.2
CPT0012900004
Tumor
-0.2
CPT0025920001
Normal
-0.2
CPT0065690003
Tumor
-0.2
CPT0007870001
Normal
-0.3
CPT0065930003
Tumor
-0.3
CPT0012550003
Tumor
-0.3
CPT0088900003
Tumor
-0.3
CPT0012920003
Normal
-0.3
CPT0019990003
Tumor
-0.3
CPT0079230003
Tumor
-0.3
CPT0007860003
Tumor
-0.3
CPT0020130001
Normal
-0.3
CPT0018250001
Normal
-0.3
CPT0078530001
Normal
-0.3
CPT0012290003
Normal
-0.3
CPT0001230001
Normal
-0.3
CPT0069010001
Normal
-0.3
CPT0063630003
Tumor
-0.3
CPT0092730003
Tumor
-0.4
CPT0092790003
Tumor
-0.4
CPT0009020003
Normal
-0.4
CPT0088760003
Tumor
-0.4
CPT0087040003
Tumor
-0.5
CPT0077490003
Tumor
-0.5
CPT0069160003
Tumor
-0.6
CPT0006630003
Tumor
-0.6
CPT0069000003
Tumor
-0.7
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
