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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POP4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
64.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
63.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO50807
0 years, male, NA, stage:1, alive, 540 days
76.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.1
865
Tumor
0.9
965
Tumor
0.8
367
Tumor
0.7
195
Tumor
0.7
967
Tumor
0.6
427
Tumor
0.6
123
Tumor
0.6
818
Normal
0.6
285
Tumor
0.6
743
Tumor
0.6
513
Tumor
0.6
125
Tumor
0.6
1041
Tumor
0.6
267
Tumor
0.6
313
Tumor
0.6
191
Tumor
0.6
535
Tumor
0.6
213
Tumor
0.5
671
Tumor
0.5
217
Tumor
0.5
1021
Tumor
0.5
112
Tumor
0.5
877
Tumor
0.4
951
Tumor
0.4
497
Tumor
0.4
395
Tumor
0.4
375
Tumor
0.4
185
Tumor
0.4
1031
Tumor
0.4
257
Tumor
0.4
567
Tumor
0.4
881
Tumor
0.4
161
Tumor
0.4
953
Tumor
0.4
665
Tumor
0.4
222
Normal
0.4
227
Tumor
0.4
127
Tumor
0.4
196
Normal
0.4
383
Tumor
0.4
351
Tumor
0.4
357
Tumor
0.4
883
Tumor
0.4
423
Tumor
0.4
413
Tumor
0.4
911
Tumor
0.4
1025
Tumor
0.4
937
Tumor
0.4
467
Tumor
0.3
431
Tumor
0.3
697
Tumor
0.3
171
Tumor
0.3
661
Tumor
0.3
957
Tumor
0.3
223
Tumor
0.3
137
Tumor
0.3
393
Tumor
0.3
425
Tumor
0.3
221
Tumor
0.3
361
Tumor
0.3
571
Tumor
0.3
214
Normal
0.3
124
Normal
0.3
777
Tumor
0.3
272
Normal
0.3
218
Normal
0.3
858
Normal
0.3
685
Tumor
0.3
1027
Tumor
0.3
271
Tumor
0.3
663
Tumor
0.3
824
Normal
0.3
641
Tumor
0.3
537
Tumor
0.3
113
Tumor
0.2
557
Tumor
0.2
258
Normal
0.2
975
Tumor
0.2
493
Tumor
0.2
148
Normal
0.2
187
Tumor
0.2
186
Normal
0.2
343
Tumor
0.2
297
Tumor
0.2
268
Normal
0.2
447
Tumor
0.2
851
Tumor
0.2
192
Normal
0.2
298
Normal
0.2
232
Normal
0.2
816
Normal
0.2
188
Normal
0.2
443
Tumor
0.2
387
Tumor
0.2
231
Tumor
0.2
627
Tumor
0.2
695
Tumor
0.2
873
Tumor
0.2
461
Tumor
0.2
172
Normal
0.2
724
Normal
0.2
615
Tumor
0.2
983
Tumor
0.2
145
Tumor
0.2
411
Tumor
0.2
525
Tumor
0.1
327
Tumor
0.1
813
Tumor
0.1
132
Normal
0.1
314
Normal
0.1
483
Tumor
0.1
162
Normal
0.1
445
Tumor
0.1
913
Tumor
0.1
815
Tumor
0.1
533
Tumor
0.1
912
Normal
0.1
135
Tumor
0.1
388
Normal
0.1
353
Tumor
0.1
515
Tumor
0.1
744
Normal
0.1
517
Tumor
0.1
126
Normal
0.1
396
Normal
0.1
211
Tumor
0.1
1022
Normal
0.1
111
Normal
0.1
262
Normal
0.1
278
Normal
0.1
814
Normal
0.1
277
Tumor
0.1
286
Normal
0.1
385
Tumor
0.1
365
Tumor
0.1
636
Normal
0.1
746
Normal
0.1
421
Tumor
0.1
463
Tumor
0.1
394
Normal
0.1
648
Normal
0.1
363
Tumor
0.1
527
Tumor
0.1
713
Tumor
0.1
1015
Tumor
0.1
465
Tumor
0.1
471
Tumor
0.1
666
Normal
0.1
433
Tumor
0.1
138
Normal
0.1
261
Tumor
0.1
146
Normal
0.1
1013
Tumor
0.1
128
Normal
0.1
755
Tumor
0.1
448
Normal
0.0
863
Tumor
0.0
861
Tumor
0.0
228
Normal
0.0
332
Normal
0.0
963
Tumor
0.0
574
Normal
0.0
386
Normal
0.0
616
Normal
0.0
1046
Normal
0.0
628
Normal
0.0
136
Normal
0.0
1028
Normal
0.0
944
Normal
0.0
618
Normal
0.0
356
Normal
0.0
563
Tumor
0.0
392
Normal
0.0
852
Normal
0.0
376
Normal
0.0
572
Normal
0.0
786
Normal
0.0
341
Tumor
0.0
737
Tumor
0.0
487
Tumor
0.0
617
Tumor
0.0
635
Tumor
0.0
366
Normal
0.0
212
Normal
0.0
647
Tumor
0.0
114
Normal
0.0
141
Tumor
0.0
745
Tumor
0.0
284
Normal
0.0
857
Tumor
0.0
558
Normal
0.0
738
Normal
0.0
715
Tumor
0.0
147
Tumor
0.0
943
Tumor
0.0
283
Tumor
0.0
662
Normal
0.0
878
Normal
0.0
224
Normal
0.0
362
Normal
0.0
864
Normal
0.0
698
Normal
0.0
976
Normal
0.0
914
Normal
0.0
514
Normal
0.0
545
Tumor
0.0
817
Tumor
0.0
866
Normal
0.0
868
Normal
0.0
536
Normal
0.0
1016
Normal
0.0
466
Normal
-0.1
477
Tumor
-0.1
1032
Normal
-0.1
867
Tumor
-0.1
568
Normal
-0.1
862
Normal
-0.1
573
Tumor
-0.1
328
Normal
-0.1
741
Tumor
-0.1
462
Normal
-0.1
391
Tumor
-0.1
1045
Tumor
-0.1
882
Normal
-0.1
368
Normal
-0.1
954
Normal
-0.1
955
Tumor
-0.1
384
Normal
-0.1
642
Normal
-0.1
412
Normal
-0.1
564
Normal
-0.1
364
Normal
-0.1
756
Normal
-0.1
426
Normal
-0.1
728
Normal
-0.1
446
Normal
-0.1
435
Tumor
-0.1
958
Normal
-0.1
778
Normal
-0.1
982
Normal
-0.1
785
Tumor
-0.1
956
Normal
-0.1
455
Tumor
-0.1
742
Normal
-0.1
416
Normal
-0.1
1042
Normal
-0.1
464
Normal
-0.1
1026
Normal
-0.1
523
Tumor
-0.1
727
Tumor
-0.1
714
Normal
-0.1
352
Normal
-0.1
984
Normal
-0.1
968
Normal
-0.1
1044
Normal
-0.2
723
Tumor
-0.2
524
Normal
-0.2
311
Tumor
-0.2
344
Normal
-0.2
1014
Normal
-0.2
468
Normal
-0.2
721
Tumor
-0.2
672
Normal
-0.2
966
Normal
-0.2
874
Normal
-0.2
977
Tumor
-0.2
518
Normal
-0.2
823
Tumor
-0.2
434
Normal
-0.2
452
Normal
-0.2
355
Tumor
-0.2
722
Normal
-0.2
474
Normal
-0.2
528
Normal
-0.2
342
Normal
-0.2
312
Normal
-0.2
491
Tumor
-0.2
131
Tumor
-0.2
481
Tumor
-0.2
884
Normal
-0.2
964
Normal
-0.2
444
Normal
-0.2
354
Normal
-0.2
451
Tumor
-0.2
1043
Tumor
-0.2
534
Normal
-0.2
978
Normal
-0.2
142
Normal
-0.2
938
Normal
-0.2
415
Tumor
-0.2
428
Normal
-0.2
716
Normal
-0.2
358
Normal
-0.2
516
Normal
-0.2
696
Normal
-0.3
436
Normal
-0.3
526
Normal
-0.3
478
Normal
-0.3
686
Normal
-0.3
432
Normal
-0.3
488
Normal
-0.3
664
Normal
-0.3
952
Normal
-0.3
422
Normal
-0.3
484
Normal
-0.3
456
Normal
-0.3
921
Tumor
-0.3
981
Tumor
-0.3
925
Tumor
-0.3
917
Tumor
-0.3
424
Normal
-0.3
924
Normal
-0.3
494
Normal
-0.3
414
Normal
-0.3
546
Normal
-0.4
482
Normal
-0.4
923
Tumor
-0.4
498
Normal
-0.4
553
Tumor
-0.4
492
Normal
-0.4
926
Normal
-0.4
473
Tumor
-0.5
472
Normal
-0.5
918
Normal
-0.5
554
Normal
-0.5
538
Normal
-0.5
915
Tumor
-0.5
922
Normal
-0.5
916
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.