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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VRK3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
34.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
32.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VRK3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.4
515
Tumor
1.3
357
Tumor
1.1
527
Tumor
1.0
737
Tumor
1.0
777
Tumor
1.0
661
Tumor
1.0
865
Tumor
1.0
513
Tumor
0.9
431
Tumor
0.9
567
Tumor
0.9
863
Tumor
0.9
425
Tumor
0.8
955
Tumor
0.7
497
Tumor
0.6
365
Tumor
0.6
951
Tumor
0.6
921
Tumor
0.6
445
Tumor
0.5
663
Tumor
0.5
518
Normal
0.5
943
Tumor
0.5
627
Tumor
0.5
756
Normal
0.5
463
Tumor
0.5
211
Tumor
0.5
873
Tumor
0.5
277
Tumor
0.4
262
Normal
0.4
473
Tumor
0.4
358
Normal
0.4
213
Tumor
0.4
877
Tumor
0.4
393
Tumor
0.4
615
Tumor
0.4
914
Normal
0.4
571
Tumor
0.4
272
Normal
0.4
383
Tumor
0.4
1021
Tumor
0.4
192
Normal
0.4
443
Tumor
0.4
128
Normal
0.3
564
Normal
0.3
1027
Tumor
0.3
647
Tumor
0.3
227
Tumor
0.3
141
Tumor
0.3
714
Normal
0.3
362
Normal
0.3
427
Tumor
0.3
424
Normal
0.3
1046
Normal
0.3
126
Normal
0.3
722
Normal
0.3
257
Tumor
0.3
446
Normal
0.3
328
Normal
0.3
267
Tumor
0.3
721
Tumor
0.3
258
Normal
0.3
131
Tumor
0.3
874
Normal
0.3
743
Tumor
0.3
666
Normal
0.3
434
Normal
0.2
432
Normal
0.2
922
Normal
0.2
231
Tumor
0.2
517
Tumor
0.2
268
Normal
0.2
285
Tumor
0.2
648
Normal
0.2
448
Normal
0.2
414
Normal
0.2
926
Normal
0.2
965
Tumor
0.2
433
Tumor
0.2
574
Normal
0.2
416
Normal
0.2
283
Tumor
0.2
918
Normal
0.2
716
Normal
0.2
222
Normal
0.2
196
Normal
0.2
755
Tumor
0.2
356
Normal
0.2
468
Normal
0.2
452
Normal
0.2
785
Tumor
0.2
436
Normal
0.2
232
Normal
0.2
212
Normal
0.2
456
Normal
0.2
271
Tumor
0.2
862
Normal
0.2
426
Normal
0.1
867
Tumor
0.1
534
Normal
0.1
572
Normal
0.1
745
Tumor
0.1
487
Tumor
0.1
114
Normal
0.1
882
Normal
0.1
952
Normal
0.1
967
Tumor
0.1
514
Normal
0.1
428
Normal
0.1
221
Tumor
0.1
695
Tumor
0.1
386
Normal
0.1
944
Normal
0.1
727
Tumor
0.1
411
Tumor
0.1
546
Normal
0.1
422
Normal
0.1
394
Normal
0.1
878
Normal
0.1
228
Normal
0.1
147
Tumor
0.1
981
Tumor
0.1
298
Normal
0.1
388
Normal
0.1
464
Normal
0.1
364
Normal
0.1
353
Tumor
0.1
857
Tumor
0.1
738
Normal
0.1
528
Normal
0.1
533
Tumor
0.1
983
Tumor
0.1
977
Tumor
0.1
956
Normal
0.1
568
Normal
0.1
188
Normal
0.1
421
Tumor
0.1
698
Normal
0.1
367
Tumor
0.1
975
Tumor
0.1
261
Tumor
0.1
664
Normal
0.1
744
Normal
0.1
864
Normal
0.1
366
Normal
0.1
314
Normal
0.1
412
Normal
0.1
924
Normal
0.1
858
Normal
0.1
455
Tumor
0.1
724
Normal
0.1
111
Normal
0.1
1044
Normal
0.1
127
Tumor
0.1
195
Tumor
0.0
616
Normal
0.0
786
Normal
0.0
1026
Normal
0.0
516
Normal
0.0
778
Normal
0.0
413
Tumor
0.0
938
Normal
0.0
341
Tumor
0.0
461
Tumor
0.0
966
Normal
0.0
618
Normal
0.0
396
Normal
0.0
861
Tumor
0.0
278
Normal
0.0
963
Tumor
0.0
368
Normal
0.0
686
Normal
0.0
723
Tumor
0.0
342
Normal
0.0
387
Tumor
0.0
823
Tumor
0.0
915
Tumor
0.0
185
Tumor
0.0
466
Normal
0.0
696
Normal
0.0
814
Normal
0.0
526
Normal
0.0
884
Normal
0.0
881
Tumor
0.0
447
Tumor
0.0
148
Normal
0.0
217
Tumor
0.0
742
Normal
0.0
868
Normal
0.0
344
Normal
0.0
435
Tumor
0.0
913
Tumor
0.0
161
Tumor
0.0
813
Tumor
0.0
545
Tumor
0.0
662
Normal
0.0
912
Normal
0.0
1028
Normal
0.0
642
Normal
0.0
124
Normal
0.0
524
Normal
0.0
635
Tumor
0.0
1042
Normal
0.0
444
Normal
0.0
284
Normal
0.0
1015
Tumor
0.0
123
Tumor
0.0
484
Normal
0.0
1045
Tumor
0.0
964
Normal
-0.1
492
Normal
-0.1
351
Tumor
-0.1
162
Normal
-0.1
186
Normal
-0.1
137
Tumor
-0.1
474
Normal
-0.1
312
Normal
-0.1
916
Normal
-0.1
462
Normal
-0.1
483
Tumor
-0.1
866
Normal
-0.1
423
Tumor
-0.1
332
Normal
-0.1
978
Normal
-0.1
465
Tumor
-0.1
214
Normal
-0.1
451
Tumor
-0.1
672
Normal
-0.1
286
Normal
-0.1
132
Normal
-0.1
498
Normal
-0.1
361
Tumor
-0.1
384
Normal
-0.1
375
Tumor
-0.1
488
Normal
-0.1
172
Normal
-0.1
917
Tumor
-0.1
138
Normal
-0.1
392
Normal
-0.1
218
Normal
-0.1
958
Normal
-0.1
558
Normal
-0.1
482
Normal
-0.1
554
Normal
-0.1
923
Tumor
-0.1
523
Tumor
-0.1
472
Normal
-0.1
697
Tumor
-0.1
135
Tumor
-0.1
728
Normal
-0.1
976
Normal
-0.1
142
Normal
-0.1
553
Tumor
-0.1
376
Normal
-0.1
354
Normal
-0.1
493
Tumor
-0.2
968
Normal
-0.2
224
Normal
-0.2
363
Tumor
-0.2
628
Normal
-0.2
343
Tumor
-0.2
1022
Normal
-0.2
311
Tumor
-0.2
713
Tumor
-0.2
494
Normal
-0.2
685
Tumor
-0.2
1032
Normal
-0.2
146
Normal
-0.2
1016
Normal
-0.2
563
Tumor
-0.2
136
Normal
-0.2
671
Tumor
-0.2
415
Tumor
-0.2
911
Tumor
-0.2
297
Tumor
-0.2
327
Tumor
-0.2
818
Normal
-0.2
1031
Tumor
-0.2
1043
Tumor
-0.2
883
Tumor
-0.2
331
Tumor
-0.2
953
Tumor
-0.2
741
Tumor
-0.2
636
Normal
-0.2
385
Tumor
-0.2
852
Normal
-0.2
746
Normal
-0.3
954
Normal
-0.3
536
Normal
-0.3
223
Tumor
-0.3
1014
Normal
-0.3
491
Tumor
-0.3
982
Normal
-0.3
481
Tumor
-0.3
171
Tumor
-0.3
815
Tumor
-0.3
665
Tumor
-0.3
125
Tumor
-0.3
467
Tumor
-0.3
352
Normal
-0.3
824
Normal
-0.3
641
Tumor
-0.3
957
Tumor
-0.3
478
Normal
-0.3
537
Tumor
-0.3
113
Tumor
-0.3
1041
Tumor
-0.4
573
Tumor
-0.4
145
Tumor
-0.4
617
Tumor
-0.4
525
Tumor
-0.4
817
Tumor
-0.4
816
Normal
-0.4
557
Tumor
-0.4
191
Tumor
-0.4
715
Tumor
-0.4
391
Tumor
-0.5
395
Tumor
-0.5
477
Tumor
-0.5
1013
Tumor
-0.5
187
Tumor
-0.5
471
Tumor
-0.5
984
Normal
-0.6
313
Tumor
-0.6
538
Normal
-0.6
1025
Tumor
-0.6
355
Tumor
-0.7
937
Tumor
-0.7
851
Tumor
-0.8
535
Tumor
-0.9
925
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
