MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.5 nTPM
HPA Brain:62.9 nTPM
GTEx:34.5 nTPM
FANTOM5:54.0 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:1.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.5
2586 Male, age 75, left hemisphere 79.8
2828 Female, age 72, unknown 68.1
2666 Male, age 74, left hemisphere 62.6
1833 Male, age 53, unknown 61.8
2411 Female, age 72, unknown 61.5
1830 Male, age 51, unknown 61.4
1827 Male, age 72, unknown 61.0
2219 Male, age 76, both hemispheres 58.7
1870 Female, age 42, unknown 56.2
2019 Male, age 18, unknown 53.6
Dorsal raphe nucleus
nTPM: 53.5
2750 Male, age 76, both hemispheres 67.2
1828 Male, age 53, unknown 52.4
2047 Male, age 72, unknown 50.6
2016 Female, age 72, unknown 49.9
2298 Female, age 72, unknown 47.3
Inferior colliculus
nTPM: 51.0
2849 Male, age 72, unknown 59.4
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 47.0
2097 Female, age 72, unknown 45.7
Median raphe nucleus
nTPM: 57.4
2220 Male, age 76, midline 57.4
Periaquaductal grey, anterior
nTPM: 61.3
2502 Female, age 75, unknown 65.9
1947 Male, age 18, unknown 59.6
1795 Male, age 51, unknown 58.6
Periaquaductal grey, dorsal
nTPM: 47.7
1831 Male, age 72, unknown 51.4
2464 Female, age 72, unknown 48.9
1840 Male, age 53, unknown 46.9
2850 Male, age 76, both hemispheres 43.4
Periaquaductal grey, lateral
nTPM: 50.2
2053 Male, age 18, unknown 53.2
2272 Male, age 74, both hemispheres 51.8
2140 Male, age 76, both hemispheres 45.6
Pretectal area
nTPM: 55.9
2667 Female, age 75, unknown 62.9
1815 Male, age 53, unknown 62.5
1817 Female, age 42, unknown 60.9
2407 Male, age 75, both hemispheres 58.8
2007 Male, age 72, unknown 58.2
2825 Male, age 18, unknown 56.9
1816 Male, age 51, unknown 56.7
2316 Male, age 76, right hemisphere 51.7
1944 Female, age 72, unknown 51.3
2224 Female, age 72, unknown 49.1
2273 Male, age 74, both hemispheres 45.6
Red nucleus
nTPM: 62.9
2823 Male, age 76, right hemisphere 68.5
2584 Male, age 75, left hemisphere 67.5
2588 Male, age 74, left hemisphere 66.5
1904 Male, age 53, unknown 65.6
1865 Male, age 51, unknown 65.4
2769 Male, age 72, unknown 64.3
2227 Male, age 72, unknown 63.5
1821 Female, age 72, unknown 63.2
2785 Male, age 18, unknown 62.4
2503 Female, age 72, unknown 59.1
1954 Female, age 42, unknown 56.3
2725 Female, age 75, unknown 52.6
Substantia nigra
nTPM: 58.5
2699 Male, age 18, unknown 66.6
1916 Female, age 42, unknown 65.4
2665 Male, age 74, both hemispheres 64.3
1851 Male, age 51, unknown 64.1
2583 Male, age 75, right hemisphere 62.6
1941 Male, age 53, unknown 58.2
1889 Female, age 72, unknown 56.0
2590 Female, age 75, unknown 53.2
2409 Female, age 72, unknown 48.1
2241 Male, age 72, unknown 46.8
Superior colliculus
nTPM: 59.5
2664 Male, age 75, both hemispheres 73.5
2668 Female, age 75, unknown 63.5
1796 Male, age 53, unknown 61.5
1913 Female, age 42, unknown 60.4
1995 Male, age 72, unknown 57.2
2261 Male, age 18, unknown 57.0
1895 Male, age 76, right hemisphere 56.7
1839 Male, age 51, unknown 56.1
2587 Male, age 74, left hemisphere 56.1
2087 Female, age 72, unknown 53.0
Ventral tegmental area
nTPM: 58.4
2223 Female, age 72, unknown 62.9
2410 Female, age 72, unknown 60.6
2218 Male, age 76, both hemispheres 59.6
1915 Female, age 42, unknown 58.4
1942 Male, age 51, unknown 55.5
2021 Male, age 53, unknown 53.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 65.9
Min nTPM: 16.6
Std nTPM: 7.2
Median nTPM: 34.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 55.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 49.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 48.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 47.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 45.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.0
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 44.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.0
FF:10158-103A5 76 years, female 54.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 36.9
Min nTPM: 29.3
Sample A Female 36.9
Sample B Female 29.3
Sample C Male 34.1
Sample D Male 36.7
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 50.7
Min nTPM: 28.6
Sample A Female 50.7
Sample B Female 31.2
Sample C Male 30.5
Sample D Male 28.6
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 29.7
Min nTPM: 26.2
Sample B Female 29.7
Sample C Male 28.3
Sample D Male 26.2
Superior colliculi
nTPM: 32.8
Samples: 4

Max nTPM: 36.2
Min nTPM: 29.1
Sample A Female 35.7
Sample B Female 29.1
Sample C Male 30.2
Sample D Male 36.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Male 1.1
Sample B Male 0.9
Sample C Female 0.6
Sample D Female 1.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
634454 Antisense, RP_040914_01_A04, Mouse strain C57BL/6J (56 days, male) 0.6

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