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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STX10 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
181.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
88.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
80.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
79.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
79.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
78.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
77.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
76.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
73.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
71.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
71.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
70.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
69.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
65.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
64.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
63.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
62.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
61.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
60.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
59.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
58.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
57.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
57.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
56.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
56.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
55.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
55.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
55.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
55.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
55.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
54.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
53.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
53.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
53.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
53.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
52.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
50.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
49.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
49.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
48.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
48.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
48.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
47.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
47.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
47.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
45.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
45.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
44.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
44.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
43.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
42.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
41.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
40.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
39.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
38.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
36.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
36.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
36.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
35.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
33.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
32.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
32.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STX10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.4
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
112.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
95.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
90.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
86.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
85.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
81.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
79.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
77.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
76.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
74.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
73.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
73.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
68.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
68.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
68.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
67.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
65.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
64.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
63.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
63.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
63.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
61.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
60.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
60.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
59.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
58.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
57.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
57.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
57.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
56.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
55.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
55.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
54.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
51.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
51.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
48.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
47.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
46.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
45.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
44.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
43.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
43.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
42.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
41.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
40.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
36.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.4
697
Tumor
0.7
567
Tumor
0.7
537
Tumor
0.6
493
Tumor
0.6
491
Tumor
0.6
727
Tumor
0.6
311
Tumor
0.6
277
Tumor
0.5
123
Tumor
0.5
553
Tumor
0.5
1014
Normal
0.5
361
Tumor
0.5
395
Tumor
0.5
464
Normal
0.4
223
Tumor
0.4
147
Tumor
0.4
125
Tumor
0.4
113
Tumor
0.4
211
Tumor
0.4
498
Normal
0.4
1027
Tumor
0.4
285
Tumor
0.4
1046
Normal
0.4
191
Tumor
0.4
926
Normal
0.3
492
Normal
0.3
981
Tumor
0.3
327
Tumor
0.3
523
Tumor
0.3
483
Tumor
0.3
221
Tumor
0.3
514
Normal
0.3
526
Normal
0.3
428
Normal
0.3
228
Normal
0.3
467
Tumor
0.3
387
Tumor
0.3
617
Tumor
0.3
195
Tumor
0.3
271
Tumor
0.3
545
Tumor
0.3
724
Normal
0.3
524
Normal
0.3
685
Tumor
0.3
535
Tumor
0.3
471
Tumor
0.3
414
Normal
0.3
913
Tumor
0.3
331
Tumor
0.3
737
Tumor
0.3
956
Normal
0.3
415
Tumor
0.2
447
Tumor
0.2
494
Normal
0.2
743
Tumor
0.2
224
Normal
0.2
813
Tumor
0.2
536
Normal
0.2
982
Normal
0.2
868
Normal
0.2
497
Tumor
0.2
383
Tumor
0.2
212
Normal
0.2
431
Tumor
0.2
618
Normal
0.2
451
Tumor
0.2
925
Tumor
0.2
355
Tumor
0.2
353
Tumor
0.2
443
Tumor
0.2
446
Normal
0.2
513
Tumor
0.2
1044
Normal
0.2
863
Tumor
0.2
426
Normal
0.2
881
Tumor
0.2
283
Tumor
0.2
424
Normal
0.2
755
Tumor
0.2
785
Tumor
0.2
488
Normal
0.2
937
Tumor
0.2
187
Tumor
0.2
1045
Tumor
0.2
145
Tumor
0.2
137
Tumor
0.2
525
Tumor
0.2
616
Normal
0.2
465
Tumor
0.2
368
Normal
0.2
455
Tumor
0.1
452
Normal
0.1
217
Tumor
0.1
862
Normal
0.1
964
Normal
0.1
456
Normal
0.1
218
Normal
0.1
313
Tumor
0.1
435
Tumor
0.1
272
Normal
0.1
344
Normal
0.1
434
Normal
0.1
911
Tumor
0.1
528
Normal
0.1
713
Tumor
0.1
533
Tumor
0.1
351
Tumor
0.1
965
Tumor
0.1
462
Normal
0.1
445
Tumor
0.1
444
Normal
0.1
741
Tumor
0.1
466
Normal
0.1
375
Tumor
0.1
938
Normal
0.1
436
Normal
0.1
432
Normal
0.1
516
Normal
0.1
963
Tumor
0.1
213
Tumor
0.1
463
Tumor
0.1
558
Normal
0.1
546
Normal
0.1
328
Normal
0.1
258
Normal
0.1
111
Normal
0.1
356
Normal
0.1
534
Normal
0.1
468
Normal
0.1
698
Normal
0.1
518
Normal
0.1
478
Normal
0.1
865
Tumor
0.1
411
Tumor
0.1
352
Normal
0.1
1016
Normal
0.0
716
Normal
0.0
917
Tumor
0.0
515
Tumor
0.0
647
Tumor
0.0
538
Normal
0.0
861
Tumor
0.0
126
Normal
0.0
358
Normal
0.0
268
Normal
0.0
136
Normal
0.0
413
Tumor
0.0
916
Normal
0.0
388
Normal
0.0
393
Tumor
0.0
367
Tumor
0.0
448
Normal
0.0
686
Normal
0.0
484
Normal
0.0
517
Tumor
0.0
696
Normal
0.0
412
Normal
0.0
131
Tumor
0.0
877
Tumor
0.0
214
Normal
0.0
554
Normal
0.0
958
Normal
0.0
354
Normal
0.0
864
Normal
0.0
665
Tumor
0.0
396
Normal
0.0
433
Tumor
0.0
978
Normal
0.0
777
Tumor
0.0
984
Normal
0.0
416
Normal
0.0
874
Normal
0.0
262
Normal
0.0
968
Normal
0.0
922
Normal
0.0
814
Normal
0.0
135
Tumor
0.0
362
Normal
0.0
162
Normal
0.0
222
Normal
0.0
297
Tumor
0.0
721
Tumor
0.0
728
Normal
0.0
427
Tumor
0.0
392
Normal
0.0
672
Normal
-0.1
394
Normal
-0.1
573
Tumor
-0.1
923
Tumor
-0.1
192
Normal
-0.1
858
Normal
-0.1
364
Normal
-0.1
568
Normal
-0.1
723
Tumor
-0.1
1043
Tumor
-0.1
557
Tumor
-0.1
873
Tumor
-0.1
866
Normal
-0.1
314
Normal
-0.1
882
Normal
-0.1
912
Normal
-0.1
944
Normal
-0.1
142
Normal
-0.1
663
Tumor
-0.1
955
Tumor
-0.1
385
Tumor
-0.1
778
Normal
-0.1
341
Tumor
-0.1
267
Tumor
-0.1
366
Normal
-0.1
615
Tumor
-0.1
976
Normal
-0.1
421
Tumor
-0.1
185
Tumor
-0.1
952
Normal
-0.1
481
Tumor
-0.1
482
Normal
-0.1
232
Normal
-0.1
742
Normal
-0.1
386
Normal
-0.1
918
Normal
-0.1
286
Normal
-0.1
284
Normal
-0.1
563
Tumor
-0.1
943
Tumor
-0.1
745
Tumor
-0.1
1015
Tumor
-0.1
141
Tumor
-0.1
738
Normal
-0.1
574
Normal
-0.1
983
Tumor
-0.1
722
Normal
-0.1
186
Normal
-0.2
127
Tumor
-0.2
124
Normal
-0.2
343
Tumor
-0.2
487
Tumor
-0.2
867
Tumor
-0.2
196
Normal
-0.2
376
Normal
-0.2
641
Tumor
-0.2
114
Normal
-0.2
227
Tumor
-0.2
953
Tumor
-0.2
261
Tumor
-0.2
363
Tumor
-0.2
365
Tumor
-0.2
715
Tumor
-0.2
188
Normal
-0.2
278
Normal
-0.2
662
Normal
-0.2
477
Tumor
-0.2
824
Normal
-0.2
883
Tumor
-0.2
312
Normal
-0.2
1021
Tumor
-0.2
966
Normal
-0.2
146
Normal
-0.2
422
Normal
-0.2
172
Normal
-0.2
148
Normal
-0.2
744
Normal
-0.2
746
Normal
-0.2
954
Normal
-0.2
171
Tumor
-0.2
342
Normal
-0.2
1032
Normal
-0.2
884
Normal
-0.2
423
Tumor
-0.2
967
Tumor
-0.3
425
Tumor
-0.3
851
Tumor
-0.3
332
Normal
-0.3
138
Normal
-0.3
786
Normal
-0.3
132
Normal
-0.3
1028
Normal
-0.3
823
Tumor
-0.3
298
Normal
-0.3
915
Tumor
-0.3
714
Normal
-0.3
257
Tumor
-0.3
128
Normal
-0.3
695
Tumor
-0.3
664
Normal
-0.3
924
Normal
-0.3
1031
Tumor
-0.3
1041
Tumor
-0.3
951
Tumor
-0.3
857
Tumor
-0.3
161
Tumor
-0.3
231
Tumor
-0.3
572
Normal
-0.3
661
Tumor
-0.3
564
Normal
-0.3
756
Normal
-0.3
914
Normal
-0.3
642
Normal
-0.3
384
Normal
-0.4
357
Tumor
-0.4
666
Normal
-0.4
818
Normal
-0.4
648
Normal
-0.4
878
Normal
-0.4
474
Normal
-0.4
473
Tumor
-0.4
977
Tumor
-0.4
1026
Normal
-0.4
112
Tumor
-0.4
391
Tumor
-0.4
921
Tumor
-0.4
1013
Tumor
-0.4
636
Normal
-0.5
1022
Normal
-0.5
1025
Tumor
-0.5
628
Normal
-0.6
852
Normal
-0.6
671
Tumor
-0.6
817
Tumor
-0.6
957
Tumor
-0.6
815
Tumor
-0.6
472
Normal
-0.7
461
Tumor
-0.7
975
Tumor
-0.7
627
Tumor
-0.7
571
Tumor
-0.7
1042
Normal
-0.7
816
Normal
-0.7
635
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
