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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.6
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
135.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
87.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
76.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
70.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
68.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
61.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
49.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
49.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
38.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
23.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.3
285
Tumor
1.2
537
Tumor
1.2
967
Tumor
1.2
123
Tumor
1.1
965
Tumor
1.1
493
Tumor
1.0
815
Tumor
1.0
665
Tumor
1.0
331
Tumor
1.0
865
Tumor
0.9
221
Tumor
0.9
685
Tumor
0.9
267
Tumor
0.8
851
Tumor
0.8
395
Tumor
0.8
983
Tumor
0.8
361
Tumor
0.7
513
Tumor
0.7
724
Normal
0.7
737
Tumor
0.7
473
Tumor
0.7
413
Tumor
0.7
131
Tumor
0.6
223
Tumor
0.6
431
Tumor
0.6
535
Tumor
0.6
1041
Tumor
0.6
227
Tumor
0.6
557
Tumor
0.6
697
Tumor
0.5
483
Tumor
0.5
727
Tumor
0.5
715
Tumor
0.5
1025
Tumor
0.5
877
Tumor
0.4
951
Tumor
0.4
925
Tumor
0.4
913
Tumor
0.4
367
Tumor
0.4
937
Tumor
0.4
977
Tumor
0.4
743
Tumor
0.4
171
Tumor
0.4
353
Tumor
0.4
277
Tumor
0.3
217
Tumor
0.3
191
Tumor
0.3
311
Tumor
0.3
113
Tumor
0.3
427
Tumor
0.3
755
Tumor
0.3
211
Tumor
0.3
533
Tumor
0.3
525
Tumor
0.3
1015
Tumor
0.3
387
Tumor
0.3
661
Tumor
0.3
363
Tumor
0.3
823
Tumor
0.3
391
Tumor
0.3
573
Tumor
0.3
463
Tumor
0.3
523
Tumor
0.3
357
Tumor
0.3
553
Tumor
0.3
497
Tumor
0.3
963
Tumor
0.3
1031
Tumor
0.2
1045
Tumor
0.2
283
Tumor
0.2
187
Tumor
0.2
465
Tumor
0.2
383
Tumor
0.2
527
Tumor
0.2
355
Tumor
0.2
641
Tumor
0.2
943
Tumor
0.2
385
Tumor
0.2
635
Tumor
0.2
443
Tumor
0.2
671
Tumor
0.2
953
Tumor
0.2
921
Tumor
0.2
351
Tumor
0.2
881
Tumor
0.2
327
Tumor
0.2
297
Tumor
0.2
491
Tumor
0.1
785
Tumor
0.1
375
Tumor
0.1
445
Tumor
0.1
883
Tumor
0.1
1013
Tumor
0.1
571
Tumor
0.1
915
Tumor
0.1
861
Tumor
0.1
911
Tumor
0.1
127
Tumor
0.1
447
Tumor
0.1
112
Tumor
0.1
278
Normal
0.1
423
Tumor
0.1
147
Tumor
0.1
314
Normal
0.1
873
Tumor
0.1
393
Tumor
0.1
615
Tumor
0.1
545
Tumor
0.1
713
Tumor
0.1
721
Tumor
0.1
777
Tumor
0.1
271
Tumor
0.1
298
Normal
0.0
471
Tumor
0.0
647
Tumor
0.0
515
Tumor
0.0
813
Tumor
0.0
231
Tumor
0.0
422
Normal
0.0
451
Tumor
0.0
426
Normal
0.0
663
Tumor
0.0
313
Tumor
0.0
125
Tumor
0.0
923
Tumor
0.0
1021
Tumor
0.0
137
Tumor
0.0
461
Tumor
0.0
867
Tumor
0.0
332
Normal
0.0
425
Tumor
0.0
124
Normal
0.0
428
Normal
0.0
467
Tumor
0.0
343
Tumor
0.0
312
Normal
0.0
517
Tumor
0.0
981
Tumor
0.0
365
Tumor
0.0
524
Normal
0.0
975
Tumor
-0.1
534
Normal
-0.1
185
Tumor
-0.1
741
Tumor
-0.1
482
Normal
-0.1
195
Tumor
-0.1
213
Tumor
-0.1
414
Normal
-0.1
141
Tumor
-0.1
857
Tumor
-0.1
261
Tumor
-0.1
957
Tumor
-0.1
455
Tumor
-0.1
411
Tumor
-0.1
145
Tumor
-0.1
1046
Normal
-0.1
452
Normal
-0.1
341
Tumor
-0.1
917
Tumor
-0.1
435
Tumor
-0.1
328
Normal
-0.1
955
Tumor
-0.1
477
Tumor
-0.1
536
Normal
-0.1
433
Tumor
-0.1
415
Tumor
-0.1
212
Normal
-0.1
698
Normal
-0.1
745
Tumor
-0.1
964
Normal
-0.1
627
Tumor
-0.1
421
Tumor
-0.1
722
Normal
-0.1
135
Tumor
-0.1
424
Normal
-0.1
478
Normal
-0.1
563
Tumor
-0.1
472
Normal
-0.1
462
Normal
-0.1
114
Normal
-0.2
558
Normal
-0.2
695
Tumor
-0.2
222
Normal
-0.2
817
Tumor
-0.2
186
Normal
-0.2
516
Normal
-0.2
448
Normal
-0.2
514
Normal
-0.2
617
Tumor
-0.2
257
Tumor
-0.2
526
Normal
-0.2
554
Normal
-0.2
394
Normal
-0.2
546
Normal
-0.2
976
Normal
-0.2
436
Normal
-0.2
1014
Normal
-0.2
528
Normal
-0.2
474
Normal
-0.2
916
Normal
-0.2
188
Normal
-0.2
1044
Normal
-0.2
538
Normal
-0.2
958
Normal
-0.2
1042
Normal
-0.2
814
Normal
-0.2
224
Normal
-0.2
356
Normal
-0.2
161
Tumor
-0.2
912
Normal
-0.2
481
Tumor
-0.2
1028
Normal
-0.2
214
Normal
-0.2
286
Normal
-0.2
864
Normal
-0.2
984
Normal
-0.2
944
Normal
-0.2
882
Normal
-0.2
926
Normal
-0.2
716
Normal
-0.2
982
Normal
-0.3
756
Normal
-0.3
648
Normal
-0.3
126
Normal
-0.3
966
Normal
-0.3
914
Normal
-0.3
666
Normal
-0.3
268
Normal
-0.3
384
Normal
-0.3
228
Normal
-0.3
572
Normal
-0.3
664
Normal
-0.3
148
Normal
-0.3
918
Normal
-0.3
518
Normal
-0.3
284
Normal
-0.3
366
Normal
-0.3
564
Normal
-0.3
342
Normal
-0.3
388
Normal
-0.3
672
Normal
-0.3
128
Normal
-0.3
978
Normal
-0.3
746
Normal
-0.3
696
Normal
-0.3
111
Normal
-0.3
956
Normal
-0.3
272
Normal
-0.3
218
Normal
-0.3
686
Normal
-0.3
192
Normal
-0.3
968
Normal
-0.3
396
Normal
-0.3
162
Normal
-0.3
386
Normal
-0.3
714
Normal
-0.3
1043
Tumor
-0.3
196
Normal
-0.3
574
Normal
-0.3
172
Normal
-0.3
852
Normal
-0.3
492
Normal
-0.3
738
Normal
-0.3
364
Normal
-0.3
1016
Normal
-0.3
464
Normal
-0.3
778
Normal
-0.3
344
Normal
-0.3
868
Normal
-0.3
874
Normal
-0.3
232
Normal
-0.3
858
Normal
-0.3
878
Normal
-0.3
444
Normal
-0.3
368
Normal
-0.3
484
Normal
-0.3
922
Normal
-0.3
434
Normal
-0.3
468
Normal
-0.3
728
Normal
-0.3
954
Normal
-0.3
824
Normal
-0.3
352
Normal
-0.3
786
Normal
-0.3
456
Normal
-0.3
432
Normal
-0.3
884
Normal
-0.3
416
Normal
-0.3
662
Normal
-0.3
446
Normal
-0.4
863
Tumor
-0.4
494
Normal
-0.4
258
Normal
-0.4
412
Normal
-0.4
952
Normal
-0.4
1022
Normal
-0.4
568
Normal
-0.4
392
Normal
-0.4
1026
Normal
-0.4
866
Normal
-0.4
818
Normal
-0.4
466
Normal
-0.4
924
Normal
-0.4
142
Normal
-0.4
1032
Normal
-0.4
376
Normal
-0.4
862
Normal
-0.4
358
Normal
-0.4
362
Normal
-0.4
744
Normal
-0.4
1027
Tumor
-0.4
498
Normal
-0.4
354
Normal
-0.4
132
Normal
-0.4
636
Normal
-0.4
488
Normal
-0.4
616
Normal
-0.4
138
Normal
-0.4
262
Normal
-0.4
816
Normal
-0.4
618
Normal
-0.4
938
Normal
-0.4
642
Normal
-0.5
136
Normal
-0.5
742
Normal
-0.5
723
Tumor
-0.5
487
Tumor
-0.5
628
Normal
-0.6
146
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
