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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUSC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
70.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
43.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
42.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUSC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.4
Number of samples
231
Samples
Sample
Description
TPM
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
491
Tumor
1.5
857
Tumor
0.9
351
Tumor
0.9
937
Tumor
0.7
367
Tumor
0.7
951
Tumor
0.7
615
Tumor
0.6
481
Tumor
0.6
925
Tumor
0.6
1045
Tumor
0.6
721
Tumor
0.6
777
Tumor
0.5
311
Tumor
0.5
917
Tumor
0.5
1021
Tumor
0.5
916
Normal
0.5
851
Tumor
0.4
713
Tumor
0.4
955
Tumor
0.4
171
Tumor
0.4
924
Normal
0.4
327
Tumor
0.4
375
Tumor
0.4
737
Tumor
0.4
462
Normal
0.4
923
Tumor
0.4
283
Tumor
0.4
137
Tumor
0.4
411
Tumor
0.4
514
Normal
0.3
724
Normal
0.3
567
Tumor
0.3
938
Normal
0.3
525
Tumor
0.3
982
Normal
0.3
743
Tumor
0.3
357
Tumor
0.3
952
Normal
0.3
865
Tumor
0.3
1014
Normal
0.3
617
Tumor
0.3
412
Normal
0.3
852
Normal
0.3
817
Tumor
0.3
728
Normal
0.3
636
Normal
0.3
473
Tumor
0.3
435
Tumor
0.3
953
Tumor
0.3
477
Tumor
0.3
1031
Tumor
0.3
978
Normal
0.3
745
Tumor
0.3
387
Tumor
0.3
918
Normal
0.3
915
Tumor
0.3
823
Tumor
0.3
1046
Normal
0.3
1026
Normal
0.3
527
Tumor
0.2
1022
Normal
0.2
862
Normal
0.2
954
Normal
0.2
1013
Tumor
0.2
1043
Tumor
0.2
516
Normal
0.2
448
Normal
0.2
466
Normal
0.2
958
Normal
0.2
526
Normal
0.2
956
Normal
0.2
964
Normal
0.2
553
Tumor
0.2
421
Tumor
0.2
223
Tumor
0.2
1016
Normal
0.2
286
Normal
0.2
686
Normal
0.2
135
Tumor
0.2
965
Tumor
0.2
983
Tumor
0.2
647
Tumor
0.2
715
Tumor
0.2
426
Normal
0.2
981
Tumor
0.2
984
Normal
0.2
861
Tumor
0.2
474
Normal
0.2
778
Normal
0.2
824
Normal
0.2
212
Normal
0.2
452
Normal
0.2
943
Tumor
0.2
816
Normal
0.2
341
Tumor
0.2
868
Normal
0.2
815
Tumor
0.2
642
Normal
0.2
1041
Tumor
0.2
355
Tumor
0.2
422
Normal
0.2
524
Normal
0.2
518
Normal
0.1
746
Normal
0.1
535
Tumor
0.1
742
Normal
0.1
1044
Normal
0.1
944
Normal
0.1
498
Normal
0.1
1032
Normal
0.1
222
Normal
0.1
573
Tumor
0.1
1025
Tumor
0.1
313
Tumor
0.1
515
Tumor
0.1
878
Normal
0.1
723
Tumor
0.1
618
Normal
0.1
884
Normal
0.1
1028
Normal
0.1
427
Tumor
0.1
696
Normal
0.1
648
Normal
0.1
396
Normal
0.1
272
Normal
0.1
874
Normal
0.1
257
Tumor
0.1
113
Tumor
0.1
394
Normal
0.1
196
Normal
0.1
873
Tumor
0.1
528
Normal
0.1
414
Normal
0.1
328
Normal
0.1
536
Normal
0.1
926
Normal
0.1
913
Tumor
0.1
1042
Normal
0.1
716
Normal
0.1
428
Normal
0.1
186
Normal
0.1
727
Tumor
0.1
968
Normal
0.1
147
Tumor
0.1
976
Normal
0.1
616
Normal
0.1
698
Normal
0.1
465
Tumor
0.1
534
Normal
0.1
228
Normal
0.1
232
Normal
0.1
356
Normal
0.1
662
Normal
0.1
866
Normal
0.1
867
Tumor
0.1
391
Tumor
0.1
966
Normal
0.1
922
Normal
0.1
741
Tumor
0.1
818
Normal
0.1
353
Tumor
0.1
423
Tumor
0.1
358
Normal
0.1
125
Tumor
0.1
484
Normal
0.1
755
Tumor
0.1
392
Normal
0.1
195
Tumor
0.1
386
Normal
0.1
877
Tumor
0.1
537
Tumor
0.0
142
Normal
0.0
628
Normal
0.0
478
Normal
0.0
786
Normal
0.0
722
Normal
0.0
342
Normal
0.0
258
Normal
0.0
471
Tumor
0.0
882
Normal
0.0
436
Normal
0.0
523
Tumor
0.0
912
Normal
0.0
492
Normal
0.0
513
Tumor
0.0
472
Normal
0.0
424
Normal
0.0
464
Normal
0.0
554
Normal
0.0
921
Tumor
0.0
218
Normal
0.0
664
Normal
0.0
557
Tumor
0.0
517
Tumor
0.0
172
Normal
0.0
546
Normal
0.0
224
Normal
0.0
738
Normal
0.0
385
Tumor
0.0
863
Tumor
0.0
714
Normal
N/A
268
Normal
0.0
161
Tumor
0.0
388
Normal
0.0
395
Tumor
0.0
451
Tumor
0.0
383
Tumor
0.0
332
Normal
0.0
468
Normal
0.0
363
Tumor
0.0
111
Normal
0.0
488
Normal
0.0
533
Tumor
0.0
127
Tumor
0.0
284
Normal
0.0
883
Tumor
0.0
433
Tumor
0.0
482
Normal
0.0
231
Tumor
0.0
262
Normal
0.0
538
Normal
0.0
756
Normal
0.0
858
Normal
0.0
188
Normal
0.0
434
Normal
0.0
298
Normal
-0.1
574
Normal
-0.1
563
Tumor
-0.1
227
Tumor
-0.1
461
Tumor
-0.1
271
Tumor
-0.1
277
Tumor
-0.1
864
Normal
-0.1
148
Normal
-0.1
354
Normal
-0.1
665
Tumor
-0.1
416
Normal
-0.1
128
Normal
-0.1
963
Tumor
-0.1
214
Normal
-0.1
813
Tumor
-0.1
314
Normal
-0.1
494
Normal
-0.1
352
Normal
-0.1
685
Tumor
-0.1
558
Normal
-0.1
114
Normal
-0.1
744
Normal
-0.1
312
Normal
-0.1
564
Normal
-0.1
447
Tumor
-0.1
463
Tumor
-0.1
261
Tumor
-0.1
131
Tumor
-0.1
123
Tumor
-0.1
393
Tumor
-0.1
162
Normal
-0.1
695
Tumor
-0.1
456
Normal
-0.1
344
Normal
-0.1
666
Normal
-0.1
136
Normal
-0.1
663
Tumor
-0.1
1015
Tumor
-0.1
145
Tumor
-0.1
278
Normal
-0.1
146
Normal
-0.1
432
Normal
-0.1
187
Tumor
-0.1
217
Tumor
-0.1
185
Tumor
-0.2
132
Normal
-0.2
413
Tumor
-0.2
443
Tumor
-0.2
975
Tumor
-0.2
914
Normal
-0.2
285
Tumor
-0.2
697
Tumor
-0.2
138
Normal
-0.2
446
Normal
-0.2
213
Tumor
-0.2
572
Normal
-0.2
671
Tumor
-0.2
672
Normal
-0.2
267
Tumor
-0.2
191
Tumor
-0.2
126
Normal
-0.2
1027
Tumor
-0.2
661
Tumor
-0.2
331
Tumor
-0.2
192
Normal
-0.2
444
Normal
-0.2
112
Tumor
-0.2
364
Normal
-0.2
785
Tumor
-0.2
362
Normal
-0.2
568
Normal
-0.2
141
Tumor
-0.2
211
Tumor
-0.2
343
Tumor
-0.2
366
Normal
-0.2
368
Normal
-0.2
221
Tumor
-0.2
814
Normal
-0.2
911
Tumor
-0.3
641
Tumor
-0.3
384
Normal
-0.3
124
Normal
-0.3
571
Tumor
-0.3
455
Tumor
-0.3
365
Tumor
-0.3
431
Tumor
-0.3
376
Normal
-0.3
627
Tumor
-0.3
977
Tumor
-0.3
483
Tumor
-0.4
881
Tumor
-0.4
635
Tumor
-0.4
545
Tumor
-0.4
497
Tumor
-0.4
467
Tumor
-0.4
415
Tumor
-0.4
297
Tumor
-0.4
487
Tumor
-0.4
361
Tumor
-0.4
425
Tumor
-0.5
957
Tumor
-0.5
445
Tumor
-0.5
493
Tumor
-0.7
967
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
