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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
162.7
nTPM
HPA Brain:
222.1
nTPM
GTEx:
162.7
nTPM
FANTOM5:
332.5
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA022845
Antibody HPA023138
Antibody CAB010900
Antibody CAB012976
Glial cells
Not detected
Not detected
Not detected
Not detected
Neuronal cells
Low
Not detected
Low
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
222.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 155.2
1898
Male, age 80, left hemisphere
221.6
2621
Female, age 67, right hemisphere
203.9
1911
Female, age 85, right hemisphere
142.7
2148
Female, age 91, left hemisphere
127.0
1855
Male, age 76, left hemisphere
126.0
2529
Female, age 94, left hemisphere
110.1
Dentate gyrus nTPM: 155.6
2246
Female, age 85, both hemispheres
198.3
2530
Female, age 94, left hemisphere
197.3
2528
Male, age 74, both hemispheres
154.1
2531
Female, age 67, both hemispheres
136.2
1927
Female, age 91, both hemispheres
135.5
2010
Male, age 76, both hemispheres
112.1
Entorhinal gyrus nTPM: 130.2
2613
Female, age 94, left hemisphere
180.4
2764
Male, age 80, right hemisphere
134.9
2686
Male, age 75, right hemisphere
124.2
1787
Male, age 76, left hemisphere
117.0
2117
Female, age 91, right hemisphere
112.5
1938
Female, age 85, left hemisphere
111.8
Hippocampus, CA1 nTPM: 182.0
2749
Male, age 80, left hemisphere
357.4
2527
Male, age 74, both hemispheres
218.9
1873
Female, age 85, both hemispheres
126.5
2082
Female, age 91, right hemisphere
123.6
2045
Male, age 76, both hemispheres
83.6
Hippocampus, CA2 nTPM: 205.6
1892
Male, age 76, both hemispheres
345.2
2437
Female, age 94, left hemisphere
304.8
2249
Male, age 74, both hemispheres
194.7
1940
Female, age 85, left hemisphere
160.5
2113
Female, age 91, right hemisphere
142.0
1963
Male, age 80, left hemisphere
86.4
Hippocampus, CA3 nTPM: 222.1
2137
Male, age 80, left hemisphere
329.0
1867
Male, age 76, both hemispheres
311.8
2861
Female, age 67, both hemispheres
188.4
2436
Male, age 74, both hemispheres
171.5
2620
Female, age 94, left hemisphere
171.2
1891
Female, age 85, both hemispheres
160.5
Parahippocampal cortex nTPM: 180.0
2245
Female, age 91, both hemispheres
399.7
2250
Female, age 67, right hemisphere
240.8
2693
Female, age 94, both hemispheres
194.8
1990
Female, age 91, right hemisphere
168.9
2622
Female, age 67, right hemisphere
168.9
1933
Female, age 85, both hemispheres
138.2
1850
Male, age 80, both hemispheres
132.5
2532
Female, age 72, left hemisphere
131.2
2692
Male, age 74, both hemispheres
118.8
2018
Male, age 76, both hemispheres
106.6
Perirhinal gyrus nTPM: 172.9
2521
Female, age 94, right hemisphere
331.8
1847
Female, age 91, left hemisphere
162.1
1841
Female, age 85, right hemisphere
147.4
1794
Male, age 80, right hemisphere
121.8
2848
Male, age 76, right hemisphere
101.4
Subiculum nTPM: 207.8
2438
Female, age 94, left hemisphere
342.6
1901
Male, age 80, both hemispheres
283.8
2619
Male, age 74, both hemispheres
225.5
1977
Female, age 85, both hemispheres
163.3
2042
Male, age 76, both hemispheres
136.3
2729
Female, age 91, right hemisphere
95.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 162.7
Samples: 197
Max nTPM: 1168.5
Min nTPM: 2.8
Std nTPM: 159.8
Median nTPM: 120.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
1168.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
983.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
690.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
618.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
533.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
516.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
501.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
487.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
457.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
437.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
423.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
418.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
410.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
409.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
405.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
401.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
391.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
373.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
371.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
340.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
324.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
316.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
314.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
314.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
313.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
306.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
305.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
304.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
297.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
296.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
285.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
281.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
281.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
279.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
279.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
278.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
267.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
260.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
252.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
244.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
242.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
240.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
238.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
236.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
236.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
233.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
225.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
223.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
218.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
214.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
212.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
209.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
207.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
206.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
206.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
204.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
204.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
198.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
196.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
194.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
193.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
193.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
192.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
188.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
184.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
181.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
180.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
180.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
174.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
174.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
173.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
173.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
170.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
168.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
167.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
167.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
164.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
163.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
162.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
159.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
158.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
158.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
157.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
153.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
147.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
145.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
144.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
143.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
143.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
141.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
137.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
134.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
129.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
127.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
127.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
125.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
123.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
121.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
120.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
118.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
117.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
116.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
116.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
115.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
114.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
110.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
107.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
107.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
105.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
101.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
101.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
98.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
98.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
97.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
96.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
96.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
96.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
94.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
93.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
91.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
90.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
89.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
86.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
84.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
82.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
82.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
82.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
80.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
80.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
79.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
78.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
75.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
73.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
72.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
70.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
70.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
66.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
65.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
65.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
64.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
63.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
58.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
55.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
55.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
52.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
51.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
51.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
51.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
50.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
50.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
45.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
44.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
41.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
41.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
40.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
40.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
39.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
38.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
35.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
35.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
34.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
34.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
32.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
31.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
30.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
30.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
30.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
28.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
28.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
27.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
26.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
26.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
26.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
25.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
21.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
21.0
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
20.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
20.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
18.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
18.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
18.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
17.3
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
15.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
14.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
14.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
13.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
13.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
11.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
9.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
8.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
8.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
7.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
7.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
7.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
4.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.