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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
665.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
422.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
385.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
346.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
239.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
212.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
193.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
187.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
173.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
162.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
147.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
133.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
109.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
107.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
106.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
104.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
102.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
98.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
97.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
89.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
86.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
83.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
78.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
75.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
75.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
72.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
72.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
66.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
66.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
66.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
64.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
63.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
59.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
57.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
55.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
50.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
47.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
409.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
374.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
314.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
296.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
261.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
229.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
227.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
201.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
188.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
167.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
132.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
127.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
122.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
113.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
111.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
98.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
91.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
88.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
88.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
85.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
83.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
75.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
66.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
63.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
56.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
56.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
47.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
43.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
3.1
743
Tumor
2.6
545
Tumor
2.4
413
Tumor
2.2
617
Tumor
1.8
493
Tumor
1.4
983
Tumor
1.4
635
Tumor
1.3
916
Normal
1.2
1042
Normal
1.0
921
Tumor
1.0
864
Normal
1.0
422
Normal
0.9
416
Normal
0.9
311
Tumor
0.9
466
Normal
0.9
341
Tumor
0.9
722
Normal
0.9
147
Tumor
0.8
128
Normal
0.8
535
Tumor
0.8
188
Normal
0.8
695
Tumor
0.8
912
Normal
0.8
312
Normal
0.8
816
Normal
0.8
852
Normal
0.8
271
Tumor
0.8
424
Normal
0.8
358
Normal
0.8
414
Normal
0.8
478
Normal
0.8
976
Normal
0.8
1022
Normal
0.8
328
Normal
0.8
412
Normal
0.8
297
Tumor
0.7
914
Normal
0.7
366
Normal
0.7
284
Normal
0.7
975
Tumor
0.7
386
Normal
0.7
714
Normal
0.7
278
Normal
0.7
874
Normal
0.7
376
Normal
0.7
917
Tumor
0.7
428
Normal
0.7
723
Tumor
0.7
966
Normal
0.7
272
Normal
0.7
926
Normal
0.7
824
Normal
0.6
925
Tumor
0.6
447
Tumor
0.6
212
Normal
0.6
514
Normal
0.6
564
Normal
0.6
228
Normal
0.6
618
Normal
0.6
868
Normal
0.6
956
Normal
0.6
1013
Tumor
0.6
162
Normal
0.6
924
Normal
0.6
146
Normal
0.6
471
Tumor
0.6
978
Normal
0.6
786
Normal
0.6
666
Normal
0.6
967
Tumor
0.6
224
Normal
0.5
463
Tumor
0.5
462
Normal
0.5
268
Normal
0.5
461
Tumor
0.5
534
Normal
0.5
662
Normal
0.5
364
Normal
0.5
686
Normal
0.5
138
Normal
0.5
354
Normal
0.5
186
Normal
0.5
537
Tumor
0.5
185
Tumor
0.5
858
Normal
0.5
448
Normal
0.5
384
Normal
0.5
813
Tumor
0.5
472
Normal
0.4
1032
Normal
0.4
878
Normal
0.4
818
Normal
0.4
423
Tumor
0.4
1031
Tumor
0.4
362
Normal
0.4
982
Normal
0.4
984
Normal
0.4
494
Normal
0.4
214
Normal
0.4
368
Normal
0.4
356
Normal
0.3
148
Normal
0.3
192
Normal
0.3
258
Normal
0.3
223
Tumor
0.3
355
Tumor
0.3
777
Tumor
0.3
546
Normal
0.3
664
Normal
0.3
172
Normal
0.3
516
Normal
0.3
415
Tumor
0.3
314
Normal
0.3
628
Normal
0.2
1044
Normal
0.2
636
Normal
0.2
957
Tumor
0.2
696
Normal
0.2
536
Normal
0.2
672
Normal
0.2
538
Normal
0.2
528
Normal
0.2
884
Normal
0.2
563
Tumor
0.2
923
Tumor
0.2
298
Normal
0.2
616
Normal
0.2
1043
Tumor
0.2
744
Normal
0.2
513
Tumor
0.2
232
Normal
0.2
465
Tumor
0.2
492
Normal
0.2
446
Normal
0.2
922
Normal
0.2
427
Tumor
0.2
464
Normal
0.2
262
Normal
0.1
434
Normal
0.1
126
Normal
0.1
484
Normal
0.1
882
Normal
0.1
958
Normal
0.1
132
Normal
0.1
444
Normal
0.1
863
Tumor
0.1
944
Normal
0.1
365
Tumor
0.1
468
Normal
0.1
161
Tumor
0.1
938
Normal
0.1
964
Normal
0.1
327
Tumor
0.1
918
Normal
0.1
137
Tumor
0.1
697
Tumor
0.0
487
Tumor
0.0
648
Normal
0.0
778
Normal
0.0
432
Normal
0.0
436
Normal
0.0
452
Normal
0.0
963
Tumor
0.0
954
Normal
0.0
737
Tumor
0.0
881
Tumor
0.0
474
Normal
0.0
742
Normal
-0.1
968
Normal
-0.1
558
Normal
-0.1
814
Normal
-0.1
574
Normal
-0.1
352
Normal
-0.1
426
Normal
-0.1
136
Normal
-0.1
518
Normal
-0.1
533
Tumor
-0.1
456
Normal
-0.1
396
Normal
-0.1
1025
Tumor
-0.1
568
Normal
-0.1
716
Normal
-0.2
728
Normal
-0.2
713
Tumor
-0.2
498
Normal
-0.2
482
Normal
-0.2
1014
Normal
-0.2
952
Normal
-0.2
394
Normal
-0.2
862
Normal
-0.2
663
Tumor
-0.2
1021
Tumor
-0.2
332
Normal
-0.3
873
Tumor
-0.3
527
Tumor
-0.3
1026
Normal
-0.3
285
Tumor
-0.3
488
Normal
-0.3
571
Tumor
-0.3
817
Tumor
-0.3
286
Normal
-0.3
124
Normal
-0.3
195
Tumor
-0.3
392
Normal
-0.3
218
Normal
-0.3
1016
Normal
-0.4
756
Normal
-0.4
196
Normal
-0.4
421
Tumor
-0.4
721
Tumor
-0.4
127
Tumor
-0.4
523
Tumor
-0.4
313
Tumor
-0.4
497
Tumor
-0.4
526
Normal
-0.4
738
Normal
-0.4
1028
Normal
-0.4
481
Tumor
-0.5
823
Tumor
-0.5
642
Normal
-0.5
572
Normal
-0.5
517
Tumor
-0.5
357
Tumor
-0.5
142
Normal
-0.5
554
Normal
-0.5
363
Tumor
-0.5
277
Tumor
-0.5
191
Tumor
-0.5
467
Tumor
-0.5
866
Normal
-0.6
411
Tumor
-0.6
383
Tumor
-0.6
145
Tumor
-0.6
344
Normal
-0.7
227
Tumor
-0.7
1046
Normal
-0.7
553
Tumor
-0.7
857
Tumor
-0.7
342
Normal
-0.7
524
Normal
-0.7
698
Normal
-0.8
141
Tumor
-0.8
361
Tumor
-0.8
353
Tumor
-0.8
217
Tumor
-0.8
491
Tumor
-0.8
187
Tumor
-0.8
483
Tumor
-0.8
745
Tumor
-0.8
955
Tumor
-0.9
473
Tumor
-0.9
943
Tumor
-0.9
111
Normal
-0.9
267
Tumor
-1.0
425
Tumor
-1.0
222
Normal
-1.0
114
Normal
-1.1
388
Normal
-1.1
375
Tumor
-1.1
851
Tumor
-1.1
125
Tumor
-1.1
755
Tumor
-1.1
367
Tumor
-1.1
331
Tumor
-1.1
135
Tumor
-1.1
387
Tumor
-1.2
455
Tumor
-1.2
815
Tumor
-1.2
113
Tumor
-1.2
615
Tumor
-1.2
627
Tumor
-1.2
727
Tumor
-1.2
283
Tumor
-1.3
433
Tumor
-1.3
211
Tumor
-1.3
937
Tumor
-1.3
445
Tumor
-1.3
391
Tumor
-1.3
573
Tumor
-1.3
435
Tumor
-1.3
641
Tumor
-1.3
567
Tumor
-1.3
951
Tumor
-1.4
261
Tumor
-1.4
1027
Tumor
-1.4
785
Tumor
-1.4
431
Tumor
-1.4
746
Normal
-1.5
953
Tumor
-1.5
343
Tumor
-1.5
877
Tumor
-1.5
981
Tumor
-1.5
647
Tumor
-1.5
213
Tumor
-1.6
965
Tumor
-1.6
221
Tumor
-1.6
977
Tumor
-1.7
915
Tumor
-1.7
865
Tumor
-1.7
741
Tumor
-1.7
525
Tumor
-1.7
112
Tumor
-1.7
477
Tumor
-1.7
671
Tumor
-1.8
1045
Tumor
-1.8
351
Tumor
-1.8
1015
Tumor
-1.8
395
Tumor
-1.9
724
Normal
-1.9
123
Tumor
-1.9
557
Tumor
-1.9
883
Tumor
-1.9
451
Tumor
-1.9
257
Tumor
-2.0
1041
Tumor
-2.0
231
Tumor
-2.0
171
Tumor
-2.1
515
Tumor
-2.1
661
Tumor
-2.1
867
Tumor
-2.2
443
Tumor
-2.4
861
Tumor
-2.4
665
Tumor
-2.5
393
Tumor
-2.6
715
Tumor
-2.7
913
Tumor
-2.8
685
Tumor
-2.8
911
Tumor
-2.8
385
Tumor
-3.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
