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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
116.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
104.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
102.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
100.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
92.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
84.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
84.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
82.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
79.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
77.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
76.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
75.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
75.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
74.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
73.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
73.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
72.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
71.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
69.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
68.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
68.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
68.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
68.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
68.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
68.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
67.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
65.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
64.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
64.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
63.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
62.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
62.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
62.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
61.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
60.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
60.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
60.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
59.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
58.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
58.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
58.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
56.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
55.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
55.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
54.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
54.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
53.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
52.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
51.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
51.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
51.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
49.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
49.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
49.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
47.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
44.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
44.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
44.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
44.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
42.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
40.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
40.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
40.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
38.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
37.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.1
Number of samples
231
Samples
Sample
Description
TPM
DO45169
0 years, male, NA, stage:3, alive, 1350 days
139.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
125.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
122.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
122.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
122.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
114.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
105.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
101.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
101.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
98.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
93.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
91.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
89.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
89.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
87.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
87.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
85.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
85.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
85.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
84.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
84.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
82.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
75.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
74.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
74.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
74.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
72.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
72.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
72.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
71.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
71.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
71.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
68.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
68.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
67.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
67.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
65.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
65.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
64.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
63.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
63.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
62.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
61.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
60.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
60.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
58.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
55.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
55.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
54.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
52.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
51.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
47.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
46.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
46.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
45.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
44.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
40.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
34.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
30.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.2
557
Tumor
1.1
685
Tumor
0.9
267
Tumor
0.9
715
Tumor
0.8
697
Tumor
0.7
445
Tumor
0.7
135
Tumor
0.7
537
Tumor
0.6
567
Tumor
0.5
435
Tumor
0.5
421
Tumor
0.5
443
Tumor
0.5
147
Tumor
0.4
641
Tumor
0.4
471
Tumor
0.4
745
Tumor
0.4
877
Tumor
0.4
283
Tumor
0.4
951
Tumor
0.3
851
Tumor
0.3
937
Tumor
0.3
527
Tumor
0.3
525
Tumor
0.3
1025
Tumor
0.3
912
Normal
0.3
463
Tumor
0.3
863
Tumor
0.3
341
Tumor
0.3
665
Tumor
0.2
185
Tumor
0.2
271
Tumor
0.2
223
Tumor
0.2
127
Tumor
0.2
484
Normal
0.2
363
Tumor
0.2
616
Normal
0.2
327
Tumor
0.2
1043
Tumor
0.2
221
Tumor
0.2
663
Tumor
0.2
1027
Tumor
0.2
721
Tumor
0.2
865
Tumor
0.2
1046
Normal
0.2
364
Normal
0.2
426
Normal
0.2
553
Tumor
0.2
742
Normal
0.2
617
Tumor
0.1
514
Normal
0.1
926
Normal
0.1
385
Tumor
0.1
664
Normal
0.1
881
Tumor
0.1
698
Normal
0.1
813
Tumor
0.1
412
Normal
0.1
938
Normal
0.1
187
Tumor
0.1
1022
Normal
0.1
526
Normal
0.1
1044
Normal
0.1
915
Tumor
0.1
883
Tumor
0.1
314
Normal
0.1
1032
Normal
0.1
862
Normal
0.1
756
Normal
0.1
436
Normal
0.1
944
Normal
0.1
983
Tumor
0.1
534
Normal
0.1
546
Normal
0.1
713
Tumor
0.1
618
Normal
0.1
818
Normal
0.1
921
Tumor
0.1
867
Tumor
0.1
448
Normal
0.1
554
Normal
0.1
635
Tumor
0.1
746
Normal
0.1
967
Tumor
0.1
671
Tumor
0.1
615
Tumor
0.1
113
Tumor
0.1
222
Normal
0.1
481
Tumor
0.1
778
Normal
0.1
925
Tumor
0.1
466
Normal
0.1
422
Normal
0.1
367
Tumor
0.1
975
Tumor
0.1
1014
Normal
0.1
714
Normal
0.1
952
Normal
0.1
488
Normal
0.1
723
Tumor
0.1
356
Normal
0.1
414
Normal
0.1
571
Tumor
0.1
472
Normal
0.1
817
Tumor
0.1
1021
Tumor
0.1
636
Normal
0.1
112
Tumor
0.1
958
Normal
0.1
568
Normal
0.1
964
Normal
0.1
524
Normal
0.1
696
Normal
0.1
482
Normal
0.1
487
Tumor
0.0
824
Normal
0.0
528
Normal
0.0
924
Normal
0.0
666
Normal
0.0
978
Normal
0.0
111
Normal
0.0
142
Normal
0.0
923
Tumor
0.0
868
Normal
0.0
882
Normal
0.0
232
Normal
0.0
186
Normal
0.0
786
Normal
0.0
518
Normal
0.0
918
Normal
0.0
491
Tumor
0.0
428
Normal
0.0
564
Normal
0.0
123
Tumor
0.0
864
Normal
0.0
917
Tumor
0.0
884
Normal
0.0
728
Normal
0.0
686
Normal
0.0
132
Normal
0.0
922
Normal
0.0
716
Normal
0.0
191
Tumor
0.0
722
Normal
0.0
353
Tumor
0.0
558
Normal
0.0
523
Tumor
0.0
148
Normal
0.0
963
Tumor
0.0
672
Normal
0.0
648
Normal
0.0
387
Tumor
0.0
743
Tumor
0.0
497
Tumor
0.0
738
Normal
0.0
446
Normal
0.0
874
Normal
0.0
462
Normal
0.0
1026
Normal
0.0
258
Normal
0.0
572
Normal
0.0
968
Normal
0.0
328
Normal
0.0
866
Normal
0.0
396
Normal
0.0
415
Tumor
0.0
515
Tumor
0.0
388
Normal
0.0
368
Normal
0.0
536
Normal
0.0
965
Tumor
0.0
913
Tumor
0.0
424
Normal
0.0
342
Normal
0.0
727
Tumor
0.0
916
Normal
0.0
376
Normal
0.0
312
Normal
0.0
852
Normal
0.0
196
Normal
0.0
451
Tumor
0.0
286
Normal
0.0
211
Tumor
0.0
517
Tumor
0.0
1045
Tumor
0.0
1016
Normal
0.0
498
Normal
0.0
212
Normal
0.0
456
Normal
0.0
432
Normal
0.0
467
Tumor
0.0
137
Tumor
0.0
423
Tumor
0.0
332
Normal
0.0
724
Normal
0.0
262
Normal
0.0
228
Normal
0.0
278
Normal
0.0
464
Normal
0.0
858
Normal
-0.1
224
Normal
-0.1
162
Normal
-0.1
873
Tumor
-0.1
494
Normal
-0.1
131
Tumor
-0.1
816
Normal
-0.1
513
Tumor
-0.1
478
Normal
-0.1
172
Normal
-0.1
1041
Tumor
-0.1
125
Tumor
-0.1
468
Normal
-0.1
261
Tumor
-0.1
627
Tumor
-0.1
474
Normal
-0.1
416
Normal
-0.1
538
Normal
-0.1
976
Normal
-0.1
662
Normal
-0.1
343
Tumor
-0.1
984
Normal
-0.1
982
Normal
-0.1
492
Normal
-0.1
354
Normal
-0.1
298
Normal
-0.1
861
Tumor
-0.1
823
Tumor
-0.1
284
Normal
-0.1
433
Tumor
-0.1
628
Normal
-0.1
128
Normal
-0.1
1042
Normal
-0.1
574
Normal
-0.1
516
Normal
-0.1
533
Tumor
-0.1
358
Normal
-0.1
452
Normal
-0.1
272
Normal
-0.1
375
Tumor
-0.1
956
Normal
-0.1
136
Normal
-0.1
124
Normal
-0.1
954
Normal
-0.1
744
Normal
-0.1
392
Normal
-0.1
1028
Normal
-0.1
277
Tumor
-0.1
218
Normal
-0.1
878
Normal
-0.1
966
Normal
-0.1
331
Tumor
-0.1
362
Normal
-0.1
384
Normal
-0.1
145
Tumor
-0.1
394
Normal
-0.1
785
Tumor
-0.1
427
Tumor
-0.1
563
Tumor
-0.1
171
Tumor
-0.1
911
Tumor
-0.1
386
Normal
-0.1
146
Normal
-0.1
914
Normal
-0.2
352
Normal
-0.2
1031
Tumor
-0.2
981
Tumor
-0.2
955
Tumor
-0.2
138
Normal
-0.2
161
Tumor
-0.2
195
Tumor
-0.2
953
Tumor
-0.2
383
Tumor
-0.2
217
Tumor
-0.2
268
Normal
-0.2
1013
Tumor
-0.2
473
Tumor
-0.2
114
Normal
-0.2
257
Tumor
-0.2
455
Tumor
-0.2
395
Tumor
-0.2
361
Tumor
-0.2
391
Tumor
-0.2
465
Tumor
-0.2
444
Normal
-0.2
434
Normal
-0.2
943
Tumor
-0.2
957
Tumor
-0.2
344
Normal
-0.2
642
Normal
-0.2
814
Normal
-0.2
365
Tumor
-0.2
126
Normal
-0.2
413
Tumor
-0.2
573
Tumor
-0.2
857
Tumor
-0.2
425
Tumor
-0.2
214
Normal
-0.3
141
Tumor
-0.3
815
Tumor
-0.3
366
Normal
-0.3
285
Tumor
-0.3
737
Tumor
-0.3
977
Tumor
-0.3
313
Tumor
-0.3
1015
Tumor
-0.3
213
Tumor
-0.3
355
Tumor
-0.3
477
Tumor
-0.3
357
Tumor
-0.3
535
Tumor
-0.3
188
Normal
-0.3
411
Tumor
-0.3
393
Tumor
-0.4
493
Tumor
-0.4
192
Normal
-0.4
755
Tumor
-0.4
297
Tumor
-0.4
447
Tumor
-0.4
461
Tumor
-0.4
311
Tumor
-0.4
647
Tumor
-0.4
695
Tumor
-0.5
227
Tumor
-0.5
431
Tumor
-0.5
741
Tumor
-0.5
545
Tumor
-0.5
351
Tumor
-0.6
661
Tumor
-0.6
483
Tumor
-0.6
777
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
