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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAPTM4B is not prognostic in Ovary Serous Cystadenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
326.3
Number of samples
349
Samples
Sample
Description
TPM
TCGA-25-2404-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 883 days
1222.9
TCGA-61-2102-01A
0 years, female, white, stage:Stage IIIC, dead, 197 days
1180.7
TCGA-36-1574-01A
0 years, female, asian, stage:Stage IIIC, alive, 686 days
1156.5
TCGA-24-1105-01A
0 years, female, white, stage:Stage IIIC, dead, 1442 days
1068.5
TCGA-25-1635-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
939.9
TCGA-24-1435-01A
0 years, female, white, stage:Stage IIIC, dead, 1324 days
908.8
TCGA-57-1582-01A
0 years, female, white, stage:Stage IIIC, dead, 731 days
858.6
TCGA-61-1725-01A
0 years, female, white, stage:Stage IIIC, alive, 956 days
850.4
TCGA-61-1737-01A
0 years, female, white, stage:Stage IV, alive, 1364 days
847.5
TCGA-59-A5PD-01A
0 years, female, black or african american, stage:Stage IC, dead, 624 days
833.9
TCGA-31-1946-01A
0 years, female, stage:Stage IIIC, alive, 918 days
775.7
TCGA-24-2289-01A
0 years, female, white, stage:Stage IV, dead, 2049 days
765.8
TCGA-24-1427-01A
0 years, female, stage:Stage IIIC, alive, 147 days
765.5
TCGA-29-1696-01A
0 years, female, white, stage:Stage IIIC, dead, 1032 days
759.2
TCGA-24-2298-01A
0 years, female, white, stage:Stage IIIC, dead, 1620 days
755.2
TCGA-23-2084-01A
0 years, female, white, stage:Stage IV, dead, 1516 days
750.1
TCGA-04-1365-01A
0 years, female, white, stage:Stage IIIB, alive, 947 days
743.8
TCGA-04-1364-01A
0 years, female, white, stage:Stage IIIC, dead, 1024 days
732.5
TCGA-36-1576-01A
0 years, female, stage:Stage IIIC, alive, 915 days
732.2
TCGA-59-2355-01A
0 years, female, white, stage:Stage IV, dead, 65 days
731.8
TCGA-20-0987-01A
0 years, female, white, stage:Stage IIIC, dead, 701 days
723.9
TCGA-24-1563-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1451 days
707.0
TCGA-13-1501-01A
0 years, female, white, stage:Stage IV, dead, 1314 days
691.0
TCGA-13-0897-01A
0 years, female, white, stage:Stage IIIC, dead, 2182 days
685.5
TCGA-24-1552-01A
0 years, female, white, stage:Stage IIIC, dead, 1259 days
661.1
TCGA-24-1434-01A
0 years, female, white, stage:Stage IIIC, dead, 568 days
658.9
TCGA-25-1316-01A
0 years, female, white, stage:Stage IIIC, dead, 1279 days
651.7
TCGA-24-1847-01A
0 years, female, white, stage:Stage IV, alive, 343 days
651.4
TCGA-24-1549-01A
0 years, female, white, stage:Stage IIIB, dead, 1721 days
637.5
TCGA-24-2297-01A
0 years, female, white, stage:Stage IIIC, dead, 1699 days
632.4
TCGA-29-1693-01A
0 years, female, white, stage:Stage IIIC, alive, 3096 days
624.9
TCGA-23-2078-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
624.7
TCGA-61-2111-01A
0 years, female, white, stage:Stage IV, alive, 3825 days
622.6
TCGA-25-1320-01A
0 years, female, white, stage:Stage IIIC, dead, 1155 days
618.0
TCGA-57-1584-01A
0 years, female, white, stage:Stage IIIC, alive, 643 days
617.2
TCGA-24-1417-01A
0 years, female, white, stage:Stage IV, alive, 238 days
610.5
TCGA-31-1944-01A
0 years, female, white, stage:Stage IIIC, alive, 1386 days
609.6
TCGA-24-1558-01A
0 years, female, white, stage:Stage IIIC, dead, 594 days
603.9
TCGA-24-1425-01A
0 years, female, white, stage:Stage IIIC, alive, 181 days
601.9
TCGA-25-1628-01A
0 years, female, white, stage:Stage IIIC, dead, 627 days
601.5
TCGA-13-1511-01A
0 years, female, asian, stage:Stage IV, dead, 1650 days
600.7
TCGA-30-1718-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
583.9
TCGA-24-1419-01A
0 years, female, white, stage:Stage IIIC, alive, 239 days
580.9
TCGA-59-2354-01A
0 years, female, white, stage:Stage IIIC, dead, 1046 days
575.5
TCGA-36-1571-01A
0 years, female, white, stage:Stage IIIB, dead, 695 days
561.4
TCGA-25-1326-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
560.2
TCGA-61-1919-01A
0 years, female, white, stage:Stage IIIC, dead, 1161 days
556.2
TCGA-36-1570-01A
0 years, female, white, stage:Stage IIIC, alive, 655 days
548.2
TCGA-29-1785-01A
0 years, female, white, stage:Stage IIIC, dead, 1104 days
542.6
TCGA-29-1776-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 360 days
535.7
TCGA-61-1907-01A
0 years, female, white, stage:Stage IIIC, alive, 952 days
525.8
TCGA-25-1632-01A
0 years, female, white, stage:Stage IV, dead, 1799 days
516.4
TCGA-24-1846-01A
0 years, female, stage:Stage IIIC, alive, 133 days
515.5
TCGA-29-1705-01A
0 years, female, white, stage:Stage IIIC, dead, 555 days
513.3
TCGA-24-2026-01A
0 years, female, white, stage:Stage IIIC, dead, 1059 days
512.7
TCGA-25-2399-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
512.6
TCGA-04-1356-01A
0 years, female, white, stage:Stage IIC, dead, 1499 days
508.9
TCGA-24-1567-01A
0 years, female, white, stage:Stage IIIB, dead, 524 days
506.7
TCGA-24-1551-01A
0 years, female, white, stage:Stage IIIC, dead, 1579 days
504.9
TCGA-VG-A8LO-01A
0 years, female, black or african american, stage:Stage IV, dead, 24 days
500.3
TCGA-09-1662-01A
0 years, female, white, stage:Stage IV, dead, 2717 days
499.4
TCGA-24-2023-01A
0 years, female, white, stage:Stage IIIA, dead, 1364 days
499.1
TCGA-04-1362-01A
0 years, female, white, stage:Stage IIC, dead, 1348 days
498.5
TCGA-25-1322-01A
0 years, female, white, stage:Stage IV, dead, 91 days
497.4
TCGA-29-A5NZ-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1088 days
494.9
TCGA-24-1557-01A
0 years, female, white, stage:Stage IIIC, dead, 1213 days
492.3
TCGA-24-1423-01A
0 years, female, white, stage:Stage IIIC, alive, 190 days
483.4
TCGA-24-1550-01A
0 years, female, white, stage:Stage IIIC, dead, 1249 days
481.7
TCGA-31-1951-01A
0 years, female, white, stage:Stage IIIC, alive, 684 days
479.8
TCGA-23-1116-01A
0 years, female, white, stage:Stage IIIC, dead, 592 days
462.7
TCGA-57-1585-01A
0 years, female, white, stage:Stage IIIC, dead, 53 days
456.7
TCGA-29-1688-01A
0 years, female, white, stage:Stage IIIC, dead, 2400 days
454.6
TCGA-29-1695-01A
0 years, female, white, stage:Stage IIIC, dead, 1229 days
453.6
TCGA-61-1728-01A
0 years, female, white, stage:Stage IV, alive, 848 days
453.3
TCGA-61-1998-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
450.5
TCGA-61-2002-01A
0 years, female, white, stage:Stage IIIC, alive, 547 days
447.9
TCGA-29-1694-01A
0 years, female, white, stage:Stage IIIC, dead, 1187 days
443.6
TCGA-25-2042-01A
0 years, female, american indian or alaska native, stage:Stage IIIC, dead, 396 days
443.5
TCGA-13-1512-01A
0 years, female, white, stage:Stage IIIC, alive, 442 days
438.3
TCGA-61-2109-01A
0 years, female, white, stage:Stage IIIC, dead, 629 days
435.9
TCGA-10-0937-01A
0 years, female, white, stage:Stage IIIC, dead, 608 days
435.8
TCGA-25-1318-01A
0 years, female, white, stage:Stage IIIC, dead, 1064 days
435.0
TCGA-36-1569-01A
0 years, female, white, stage:Stage IIIC, alive, 885 days
427.8
TCGA-24-1603-01A
0 years, female, white, stage:Stage IIIB, dead, 2742 days
424.9
TCGA-25-1321-01A
0 years, female, white, stage:Stage IIIC, dead, 1033 days
420.8
TCGA-24-1464-01A
0 years, female, white, stage:Stage IIIC, dead, 379 days
420.0
TCGA-29-1710-01A
0 years, female, white, stage:Stage IIIC, dead, 951 days
419.4
TCGA-04-1361-01A
0 years, female, white, stage:Stage IIIB, alive, 989 days
417.3
TCGA-24-0979-01A
0 years, female, white, stage:Stage IV, dead, 1264 days
414.7
TCGA-24-2027-01A
0 years, female, white, stage:Stage IV, dead, 3337 days
410.0
TCGA-09-0367-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IIIC, dead, 547 days
408.8
TCGA-61-2008-01A
0 years, female, asian, stage:Stage IIC, alive, 932 days
406.3
TCGA-31-1953-01A
0 years, female, asian, stage:Stage IIIC, alive, 204 days
405.2
TCGA-31-1956-01A
0 years, female, white, stage:Stage IIIB, alive, 1342 days
399.0
TCGA-29-1766-01A
0 years, female, white, stage:Stage IIIC, dead, 1199 days
396.4
TCGA-13-2060-01A
0 years, female, white, stage:Stage IV, alive, 2369 days
395.6
TCGA-57-1994-01A
0 years, female, white, stage:'--, alive, 761 days
395.2
TCGA-13-1411-01A
0 years, female, white, stage:Stage IIIC, dead, 531 days
392.9
TCGA-24-1924-01A
0 years, female, white, stage:Stage IIIC, dead, 919 days
391.4
TCGA-13-1483-01A
0 years, female, white, stage:Stage IIIC, dead, 895 days
390.5
TCGA-61-1724-01A
0 years, female, white, stage:Stage IIIC, dead, 637 days
385.4
TCGA-25-1315-01A
0 years, female, white, stage:Stage IIIC, dead, 1583 days
381.1
TCGA-59-2363-01A
0 years, female, asian, stage:Stage IIIA, alive, 165 days
377.4
TCGA-04-1338-01A
0 years, female, white, stage:Stage IIIC, alive, 1418 days
375.6
TCGA-30-1861-01A
0 years, female, white, stage:Stage IIIC, dead, 1058 days
373.9
TCGA-61-2097-01A
0 years, female, white, stage:Stage IIC, alive, 1844 days
371.1
TCGA-24-1844-01A
0 years, female, white, stage:Stage IIIC, alive, 113 days
370.4
TCGA-04-1542-01A
0 years, female, white, stage:Stage IIIB, dead, 2561 days
365.1
TCGA-25-2398-01A
0 years, female, white, stage:Stage IIIC, dead, 1369 days
363.1
TCGA-61-2101-01A
0 years, female, white, stage:Stage IIIC, dead, 1688 days
360.7
TCGA-25-1313-01A
0 years, female, white, stage:Stage IV, dead, 820 days
360.0
TCGA-25-1329-01A
0 years, female, white, stage:Stage IIIC, dead, 457 days
358.8
TCGA-24-1418-01A
0 years, female, white, stage:Stage IIIC, alive, 243 days
356.6
TCGA-24-2281-01A
0 years, female, white, stage:Stage IIA, alive, 1357 days
356.4
TCGA-13-1410-01A
0 years, female, white, stage:Stage IV, alive, 2464 days
351.7
TCGA-24-2271-01A
0 years, female, asian, stage:Stage IIIC, dead, 962 days
350.3
TCGA-25-1627-01A
0 years, female, white, stage:Stage IIIC, dead, 394 days
348.5
TCGA-13-1505-01A
0 years, female, white, stage:Stage IIIC, alive, 1998 days
346.0
TCGA-29-1701-01A
0 years, female, white, stage:Stage IIIC, dead, 515 days
343.5
TCGA-25-1630-01A
0 years, female, white, stage:Stage IIIC, dead, 1162 days
341.4
TCGA-24-1842-01A
0 years, female, white, stage:Stage IIIC, alive, 253 days
340.4
TCGA-24-2033-01A
0 years, female, white, stage:Stage IIIC, dead, 562 days
339.3
TCGA-13-1405-01A
0 years, female, white, stage:Stage IV, dead, 868 days
338.5
TCGA-24-1430-01A
0 years, female, white, stage:Stage IIIC, dead, 863 days
337.2
TCGA-13-1507-01A
0 years, female, white, stage:Stage IIIC, dead, 1993 days
335.7
TCGA-57-1586-01A
0 years, female, white, stage:Stage IIIC, alive, 679 days
335.2
TCGA-20-1682-01A
0 years, female, white, stage:Stage IIIC, alive, 837 days
333.5
TCGA-13-1403-01A
0 years, female, white, stage:Stage IIIC, dead, 2345 days
333.0
TCGA-61-1918-01A
0 years, female, white, stage:Stage IV, dead, 479 days
331.5
TCGA-24-1467-01A
0 years, female, white, stage:Stage IIIC, dead, 3224 days
329.7
TCGA-24-1413-01A
0 years, female, white, stage:Stage IIIC, alive, 192 days
328.2
TCGA-31-1959-01A
0 years, female, white, stage:Stage IV, alive, 67 days
327.6
TCGA-30-1892-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
321.0
TCGA-59-2348-01A
0 years, female, white, stage:Stage IIIC, alive, 5481 days
320.3
TCGA-61-1914-01A
0 years, female, stage:Stage IIIC, alive, 1722 days
316.7
TCGA-09-1670-01A
0 years, female, white, stage:Stage IIIA, alive, 547 days
315.6
TCGA-13-A5FT-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 2143 days
312.1
TCGA-10-0938-01A
0 years, female, white, stage:Stage IIIC, dead, 636 days
310.4
TCGA-24-2035-01A
0 years, female, white, stage:Stage IIIC, dead, 857 days
308.6
TCGA-24-1474-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 676 days
307.7
TCGA-24-1546-01A
0 years, female, white, stage:Stage IIIC, dead, 1955 days
306.4
TCGA-5X-AA5U-01A
0 years, female, black or african american, stage:Stage IIC, alive, 361 days
305.9
TCGA-31-1950-01A
0 years, female, white, stage:Stage IIIC, alive, 571 days
304.6
TCGA-24-1416-01A
0 years, female, white, stage:Stage IV, alive, 194 days
303.4
TCGA-23-1119-01A
0 years, female, white, stage:Stage IIIC, alive, 3953 days
303.0
TCGA-24-2261-01A
0 years, female, white, stage:Stage IIIC, dead, 24 days
302.1
TCGA-25-2392-01A
0 years, female, white, stage:Stage IV, dead, 31 days
300.8
TCGA-29-2425-01A
0 years, female, white, stage:Stage IIIC, alive, 1977 days
299.8
TCGA-29-1711-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 1053 days
299.1
TCGA-13-1487-01A
0 years, female, white, stage:Stage IV, dead, 681 days
297.0
TCGA-29-1770-01A
0 years, female, white, stage:Stage IIIC, alive, 741 days
295.9
TCGA-23-1028-01A
0 years, female, white, stage:Stage IIIC, alive, 1503 days
294.8
TCGA-13-1489-01A
0 years, female, white, stage:Stage IIIC, dead, 2553 days
293.7
TCGA-13-0924-01A
0 years, female, white, stage:Stage IV, alive, 2614 days
292.6
TCGA-29-2427-01A
0 years, female, white, stage:Stage IIIC, alive, 1900 days
291.6
TCGA-24-1562-01A
0 years, female, white, stage:Stage IIIC, dead, 1384 days
291.1
TCGA-24-2024-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1769 days
290.3
TCGA-29-1781-01A
0 years, female, white, stage:Stage IIIC, alive, 255 days
289.6
TCGA-13-1485-01A
0 years, female, white, stage:Stage IV, dead, 629 days
288.1
TCGA-24-2293-01A
0 years, female, white, stage:'--, dead, 506 days
287.7
TCGA-25-1317-01A
0 years, female, white, stage:Stage IIIC, dead, 61 days
287.2
TCGA-29-1691-01A
0 years, female, white, stage:Stage IIIC, dead, 1470 days
285.8
TCGA-24-1422-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 23 days
283.5
TCGA-23-1027-01A
0 years, female, white, stage:Stage IIIC, dead, 976 days
283.2
TCGA-23-1120-01A
0 years, female, white, stage:Stage IIIC, alive, 130 days
280.8
TCGA-25-2409-01A
0 years, female, white, stage:Stage IV, dead, 821 days
279.9
TCGA-13-0906-01A
0 years, female, white, stage:Stage IIIC, alive, 3619 days
279.8
TCGA-13-1506-01A
0 years, female, white, stage:Stage IIIC, dead, 1039 days
279.6
TCGA-29-1690-01A
0 years, female, white, stage:Stage IIIC, dead, 1448 days
279.2
TCGA-29-1778-01A
0 years, female, white, stage:Stage IIIC, alive, 454 days
278.7
TCGA-24-1930-01A
0 years, female, white, stage:Stage IIIC, dead, 2467 days
277.9
TCGA-04-1651-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
277.4
TCGA-29-1784-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
276.6
TCGA-20-1686-01A
0 years, female, white, stage:Stage IIIC, alive, 89 days
275.9
TCGA-23-1118-01A
0 years, female, white, stage:Stage IIIC, alive, 2616 days
275.7
TCGA-13-1404-01A
0 years, female, white, stage:Stage IIIC, alive, 2469 days
273.8
TCGA-13-0730-01A
0 years, female, white, stage:Stage IIIC, dead, 542 days
273.2
TCGA-24-2254-01A
0 years, female, white, stage:Stage IIIC, dead, 1736 days
273.1
TCGA-25-1633-01A
0 years, female, white, stage:Stage IIIC, dead, 1891 days
272.7
TCGA-25-1631-01A
0 years, female, white, stage:Stage IIIC, dead, 9 days
272.4
TCGA-13-0726-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
270.8
TCGA-13-1496-01A
0 years, female, white, stage:Stage IIIC, dead, 129 days
270.6
TCGA-61-2113-01A
0 years, female, white, stage:Stage IIC, dead, 676 days
265.5
TCGA-57-1993-01A
0 years, female, white, stage:Stage IIIC, alive, 763 days
265.3
TCGA-24-1553-01A
0 years, female, white, stage:Stage IIIB, dead, 1767 days
263.8
TCGA-61-2104-01A
0 years, female, white, stage:Stage IIC, alive, 2338 days
262.7
TCGA-23-1022-01A
0 years, female, white, stage:Stage IIIC, dead, 1511 days
262.2
TCGA-24-1560-01A
0 years, female, white, stage:Stage IIIC, dead, 1341 days
261.2
TCGA-61-1910-01A
0 years, female, white, stage:Stage IIC, alive, 1127 days
260.3
TCGA-24-1469-01A
0 years, female, white, stage:Stage IIIC, alive, 277 days
259.0
TCGA-29-1774-01A
0 years, female, white, stage:Stage IIIC, alive, 527 days
258.1
TCGA-09-0369-01A
0 years, female, white, stage:Stage IIIC, dead, 1082 days
257.9
TCGA-23-1110-01A
0 years, female, white, stage:Stage IIIC, alive, 1658 days
257.6
TCGA-25-1623-01A
0 years, female, white, stage:Stage IV, dead, 565 days
257.1
TCGA-61-1741-01A
0 years, female, white, stage:Stage IIIB, dead, 1024 days
256.2
TCGA-29-1703-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1815 days
255.5
TCGA-23-1123-01A
0 years, female, white, stage:Stage IIIC, dead, 1018 days
255.1
TCGA-04-1519-01A
0 years, female, stage:Stage IIIC, alive, 24 days
252.4
TCGA-20-1687-01A
0 years, female, white, stage:Stage IV, alive, 81 days
251.9
TCGA-59-2351-01A
0 years, female, white, stage:Stage IIIC, alive, 3532 days
250.3
TCGA-30-1714-01A
0 years, female, white, stage:Stage IV, dead, 1158 days
248.7
TCGA-13-0797-01A
0 years, female, white, stage:Stage IIIC, alive, 2121 days
247.7
TCGA-24-2036-01A
0 years, female, white, stage:Stage IIIA, dead, 1947 days
245.9
TCGA-36-1577-01A
0 years, female, asian, stage:Stage IIC, alive, 783 days
245.0
TCGA-57-1583-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 346 days
244.6
TCGA-24-1103-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1646 days
244.4
TCGA-13-1497-01A
0 years, female, white, stage:Stage IIIC, alive, 3871 days
243.2
TCGA-10-0928-01A
0 years, female, white, stage:Stage IIIC, dead, 563 days
242.3
TCGA-09-1666-01A
0 years, female, white, stage:Stage IIIC, alive, 1752 days
242.2
TCGA-09-0364-01A
0 years, female, white, stage:Stage IIC, dead, 887 days
240.4
TCGA-61-1995-01A
0 years, female, white, stage:Stage IIIC, alive, 61 days
239.6
TCGA-24-1424-01A
0 years, female, white, stage:Stage IIIC, alive, 183 days
238.6
TCGA-24-1604-01A
0 years, female, white, stage:Stage IIIC, dead, 2688 days
237.7
TCGA-09-2045-01A
0 years, female, asian, stage:Stage IV, dead, 1069 days
236.5
TCGA-25-2396-01A
0 years, female, white, stage:Stage IIIC, dead, 92 days
236.1
TCGA-09-1669-01A
0 years, female, white, stage:Stage IIIA, alive, 928 days
235.3
TCGA-61-2003-01A
0 years, female, white, stage:Stage IIIC, alive, 122 days
235.3
TCGA-04-1648-01A
0 years, female, white, stage:Stage IIIC, dead, 871 days
234.9
TCGA-61-2098-01A
0 years, female, white, stage:Stage IIIC, alive, 1993 days
234.2
TCGA-13-1492-01A
0 years, female, white, stage:Stage IIIC, dead, 3819 days
234.2
TCGA-09-2048-01A
0 years, female, white, stage:Stage IIIC, dead, 138 days
231.8
TCGA-23-1109-01A
0 years, female, white, stage:Stage IIIC, dead, 1562 days
228.8
TCGA-13-0714-01A
0 years, female, white, stage:Stage IV, dead, 189 days
227.6
TCGA-36-1580-01A
0 years, female, stage:Stage IIIC, dead, 737 days
227.2
TCGA-24-2267-01A
0 years, female, white, stage:Stage IIB, dead, 1446 days
225.5
TCGA-04-1530-01A
0 years, female, white, stage:Stage IIIC, dead, 3622 days
224.5
TCGA-25-2401-01A
0 years, female, white, stage:Stage IIIC, dead, 90 days
223.0
TCGA-24-2288-01A
0 years, female, white, stage:Stage IIIC, dead, 25 days
222.8
TCGA-13-0883-01A
0 years, female, white, stage:Stage IIIC, dead, 2097 days
222.5
TCGA-30-1891-01A
0 years, female, white, stage:Stage IIIC, dead, 914 days
222.5
TCGA-61-1733-01A
0 years, female, white, stage:Stage IIIC, alive, 967 days
222.4
TCGA-24-0968-01A
0 years, female, white, stage:Stage IIIC, dead, 598 days
221.5
TCGA-24-2290-01A
0 years, female, white, stage:Stage IIIC, dead, 1102 days
221.4
TCGA-23-1023-01A
0 years, female, white, stage:Stage IIIC, alive, 1233 days
221.0
TCGA-04-1332-01A
0 years, female, white, stage:Stage IIIC, dead, 1247 days
220.8
TCGA-29-1783-01A
0 years, female, white, stage:Stage IIIC, alive, 220 days
219.6
TCGA-29-1769-01A
0 years, female, white, stage:Stage IIIC, alive, 699 days
219.4
TCGA-24-1431-01A
0 years, female, white, stage:Stage IIIC, dead, 583 days
219.3
TCGA-24-0982-01A
0 years, female, white, stage:Stage IIIC, dead, 679 days
218.4
TCGA-25-1323-01A
0 years, female, white, stage:Stage IIIC, dead, 395 days
218.4
TCGA-23-1030-01A
0 years, female, white, stage:Stage IIIC, alive, 886 days
218.2
TCGA-36-1568-01A
0 years, female, stage:Stage IIIC, alive, 875 days
216.3
TCGA-04-1331-01A
0 years, female, white, stage:Stage IIIC, dead, 1336 days
216.3
TCGA-24-1428-01A
0 years, female, white, stage:Stage IIIC, alive, 529 days
216.0
TCGA-61-2092-01A
0 years, female, white, stage:Stage IIIC, alive, 1573 days
214.4
TCGA-24-1843-01A
0 years, female, white, stage:Stage IIIC, alive, 106 days
214.1
TCGA-59-2350-01A
0 years, female, stage:Stage IV, dead, 679 days
214.0
TCGA-30-1857-01A
0 years, female, white, stage:Stage IV, dead, 8 days
212.4
TCGA-13-0725-01A
0 years, female, white, stage:Stage IIIC, dead, 377 days
212.0
TCGA-13-0891-01A
0 years, female, white, stage:Stage IV, dead, 3128 days
211.1
TCGA-OY-A56Q-01A
0 years, female, black or african american, stage:Stage IIA, alive, 576 days
208.7
TCGA-09-2051-01A
0 years, female, white, stage:Stage IIIC, alive, 1919 days
208.5
TCGA-13-1488-01A
0 years, female, white, stage:Stage IV, dead, 2154 days
208.1
TCGA-24-1544-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 820 days
206.6
TCGA-23-1122-01A
0 years, female, white, stage:Stage IIIC, dead, 1189 days
205.8
TCGA-29-1697-01A
0 years, female, white, stage:Stage IIIC, dead, 949 days
205.2
TCGA-24-1616-01A
0 years, female, white, stage:Stage IIIC, dead, 1163 days
205.0
TCGA-23-1111-01A
0 years, female, white, stage:Stage IIIC, alive, 98 days
204.8
TCGA-61-2009-01A
0 years, female, white, stage:Stage IIIC, alive, 1212 days
200.9
TCGA-13-0720-01A
0 years, female, white, stage:Stage IIIC, dead, 1355 days
198.3
TCGA-13-0885-01A
0 years, female, white, stage:Stage IIIC, alive, 3388 days
195.5
TCGA-25-1319-01A
0 years, female, white, stage:Stage IIIC, dead, 1977 days
195.3
TCGA-30-1860-01A
0 years, female, white, stage:Stage IIIC, dead, 1366 days
190.9
TCGA-25-1312-01A
0 years, female, white, stage:Stage IV, dead, 31 days
190.0
TCGA-30-1853-01A
0 years, female, white, stage:Stage IIIC, dead, 1103 days
189.9
TCGA-29-2414-01A
0 years, female, white, stage:Stage IIIC, dead, 2621 days
189.9
TCGA-13-1499-01A
0 years, female, white, stage:Stage IIIC, alive, 3500 days
187.3
TCGA-24-1104-01A
0 years, female, white, stage:Stage IV, dead, 1933 days
185.5
TCGA-61-2012-01A
0 years, female, white, stage:Stage IIC, alive, 932 days
185.0
TCGA-13-0886-01A
0 years, female, white, stage:Stage IIIC, alive, 4665 days
177.0
TCGA-29-1768-01A
0 years, female, white, stage:Stage IV, dead, 952 days
176.7
TCGA-13-1477-01A
0 years, female, white, stage:Stage IV, dead, 1662 days
175.8
TCGA-30-1862-01A
0 years, female, white, stage:Stage IV, dead, 186 days
170.5
TCGA-23-2077-01A
0 years, female, white, stage:Stage IIIC, alive, 3525 days
169.0
TCGA-30-1866-01A
0 years, female, white, stage:Stage IV, dead, 1114 days
168.6
TCGA-23-1113-01A
0 years, female, white, stage:Stage IV, dead, 949 days
165.7
TCGA-24-1471-01A
0 years, female, white, stage:Stage IIIC, alive, 36 days
161.0
TCGA-61-1738-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 1089 days
160.1
TCGA-20-0991-01A
0 years, female, white, stage:Stage IIB, alive, 797 days
159.5
TCGA-29-2428-01A
0 years, female, white, stage:Stage IIIC, alive, 1372 days
159.0
TCGA-25-1626-01A
0 years, female, white, stage:Stage IIIC, dead, 518 days
158.3
TCGA-13-0800-01A
0 years, female, white, stage:Stage IIIC, alive, 2661 days
158.1
TCGA-59-2352-01A
0 years, female, white, stage:Stage IIIC, dead, 286 days
157.4
TCGA-13-1495-01A
0 years, female, white, stage:Stage IIIC, dead, 2749 days
155.1
TCGA-24-1850-01A
0 years, female, white, stage:Stage IIIC, alive, 168 days
155.0
TCGA-13-0766-01A
0 years, female, white, stage:Stage IIIC, dead, 1725 days
153.6
TCGA-24-2020-01A
0 years, female, white, stage:Stage IIIC, dead, 4624 days
152.0
TCGA-13-1498-01A
0 years, female, white, stage:Stage IIIC, dead, 2012 days
148.2
TCGA-61-2000-01A
0 years, female, white, stage:Stage IIIC, alive, 441 days
144.4
TCGA-13-1407-01A
0 years, female, white, stage:Stage IIIC, alive, 2534 days
144.1
TCGA-04-1343-01A
0 years, female, white, stage:Stage IV, dead, 361 days
143.9
TCGA-29-1762-01A
0 years, female, white, stage:Stage IV, dead, 2634 days
142.1
TCGA-09-2054-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 637 days
141.3
TCGA-25-2400-01A
0 years, female, white, stage:Stage IIIC, dead, 1278 days
140.6
TCGA-24-1928-01A
0 years, female, white, stage:Stage IIIC, dead, 336 days
140.5
TCGA-20-1683-01A
0 years, female, white, stage:Stage IIIC, alive, 772 days
140.5
TCGA-25-1328-01A
0 years, female, white, stage:Stage IIIC, dead, 2009 days
140.3
TCGA-13-0923-01A
0 years, female, white, stage:Stage IIIC, alive, 2547 days
140.3
TCGA-13-0920-01A
0 years, female, white, stage:Stage IIIC, dead, 1484 days
139.9
TCGA-36-1581-01A
0 years, female, white, stage:Stage IIC, alive, 751 days
136.0
TCGA-61-2088-01A
0 years, female, white, stage:Stage IIIC, alive, 145 days
132.5
TCGA-13-1509-01A
0 years, female, white, stage:Stage IV, alive, 2438 days
132.3
TCGA-13-0765-01A
0 years, female, white, stage:Stage IIIC, dead, 1389 days
131.6
TCGA-29-1763-01A
0 years, female, black or african american, stage:Stage IIC, alive, 2032 days
130.2
TCGA-04-1514-01A
0 years, female, white, stage:Stage IIIA, dead, 1720 days
129.4
TCGA-23-1809-01A
0 years, female, white, stage:Stage IIC, alive, 16 days
127.4
TCGA-10-0933-01A
0 years, female, white, stage:Stage IIIC, dead, 446 days
126.3
TCGA-25-1634-01A
0 years, female, white, stage:Stage IIIC, dead, 1091 days
125.0
TCGA-25-2393-01A
0 years, female, white, stage:Stage IIIC, dead, 1157 days
124.9
TCGA-23-1024-01A
0 years, female, white, stage:Stage IV, alive, 468 days
124.8
TCGA-04-1350-01A
0 years, female, white, stage:Stage IIIC, dead, 1946 days
124.5
TCGA-61-1911-01A
0 years, female, white, stage:Stage IIA, alive, 1293 days
123.1
TCGA-29-1761-01A
0 years, female, asian, stage:Stage IIIC, dead, 528 days
120.5
TCGA-13-0916-01A
0 years, female, white, stage:Stage IIIC, alive, 1785 days
119.2
TCGA-13-1408-01A
0 years, female, white, stage:Stage IIIC, dead, 1680 days
117.7
TCGA-25-1870-01A
0 years, female, white, stage:Stage IIIC, dead, 455 days
115.4
TCGA-24-1565-01A
0 years, female, white, stage:Stage IIIC, dead, 312 days
114.2
TCGA-13-0724-01A
0 years, female, white, stage:Stage IV, dead, 83 days
111.4
TCGA-13-0911-01A
0 years, female, white, stage:Stage IV, dead, 1355 days
110.3
TCGA-09-0366-01A
0 years, female, white, stage:Stage IIIC, dead, 1757 days
109.8
TCGA-10-0927-01A
0 years, female, stage:Stage IIIC, dead, 2490 days
109.4
TCGA-25-1877-01A
0 years, female, white, stage:Stage IIIC, dead, 730 days
108.0
TCGA-24-1426-01A
0 years, female, white, stage:Stage IIIC, alive, 163 days
107.0
TCGA-13-0804-01A
0 years, female, white, stage:Stage IIIC, dead, 1073 days
105.1
TCGA-29-1777-01A
0 years, female, white, stage:Stage IIIC, alive, 374 days
101.2
TCGA-24-2038-01A
0 years, female, white, stage:Stage IIIA, dead, 1354 days
100.9
TCGA-61-1900-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 176 days
100.1
TCGA-04-1341-01A
0 years, female, white, stage:'--, alive, 33 days
97.7
TCGA-04-1536-01A
0 years, female, black or african american, stage:Stage IV, dead, 885 days
95.3
TCGA-24-1923-01A
0 years, female, white, stage:Stage IIIC, dead, 690 days
94.8
TCGA-24-0966-01A
0 years, female, black or african american, stage:Stage IIIC, alive, 232 days
92.7
TCGA-13-0762-01A
0 years, female, white, stage:Stage IIIC, alive, 3400 days
91.0
TCGA-24-1845-01A
0 years, female, white, stage:Stage IIIC, alive, 116 days
90.9
TCGA-10-0931-01A
0 years, female, white, stage:Stage IIIC, dead, 1000 days
89.0
TCGA-13-0887-01A
0 years, female, white, stage:Stage IIIC, dead, 2028 days
88.8
TCGA-13-0795-01A
0 years, female, white, stage:Stage IIIC, dead, 619 days
88.7
TCGA-23-1107-01A
0 years, female, white, stage:Stage IV, dead, 9 days
88.1
TCGA-13-1409-01A
0 years, female, white, stage:Stage IIIC, dead, 1742 days
86.2
TCGA-24-2280-01A
0 years, female, white, stage:Stage IIIC, alive, 2143 days
85.0
TCGA-WR-A838-01A
0 years, female, black or african american, stage:Stage IIIC, dead, 304 days
82.4
TCGA-13-0768-01A
0 years, female, white, stage:Stage IIIC, dead, 1784 days
75.7
TCGA-13-0727-01A
0 years, female, white, stage:Stage IIIC, dead, 462 days
73.8
TCGA-13-1510-01A
0 years, female, white, stage:Stage IIIC, dead, 1359 days
71.8
TCGA-04-1655-01A
0 years, female, white, stage:Stage IIIB, dead, 1380 days
71.8
TCGA-09-1673-01A
0 years, female, white, stage:Stage IV, alive, 92 days
70.7
TCGA-13-0888-01A
0 years, female, white, stage:Stage IIIC, dead, 2811 days
68.8
TCGA-61-1721-01A
0 years, female, white, stage:Stage IV, alive, 338 days
67.2
TCGA-61-2110-01A
0 years, female, white, stage:Stage IIIC, dead, 1354 days
61.7
TCGA-04-1347-01A
0 years, female, white, stage:Stage IV, alive, 1919 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAPTM4B is not prognostic in Ovary Serous Cystadenocarcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
281.6
Number of samples
81
Samples
Sample
Description
TPM
DO46344
0 years, female, NA, stage:III, dead, 642 days
1072.0
DO46327
0 years, female, NA, stage:III, dead, 184 days
970.1
DO46346
0 years, female, NA, stage:III, dead, 1187 days
853.1
DO46380
0 years, female, NA, stage:III, dead, 1423 days
629.9
DO46329
0 years, female, NA, stage:III, dead, 1699 days
584.8
DO46388
0 years, female, NA, stage:III, dead, 413 days
575.1
DO46551
0 years, female, NA, stage:III, dead, 1055 days
551.8
DO46340
0 years, female, NA, stage:III, dead, 616 days
540.7
DO46360
0 years, female, NA, stage:IV, dead, 1759 days
524.2
DO46374
0 years, female, NA, stage:III, dead, 1409 days
522.7
DO46568
0 years, female, NA, stage:III, dead, 320 days
478.3
DO46571
0 years, female, NA, stage:III, dead, 243 days
455.8
DO46354
0 years, female, NA, stage:III, dead, 843 days
451.4
DO46448
0 years, female, NA, stage:III, dead, 654 days
449.2
DO46334
0 years, female, NA, stage:III, dead, 496 days
430.8
DO46386
0 years, female, NA, stage:III, dead, 1162 days
417.3
DO46392
0 years, female, NA, stage:III, dead, 628 days
411.5
DO46332
0 years, female, NA, stage:III, dead, 689 days
411.1
DO46436
0 years, female, NA, stage:III, alive, 3193 days
406.8
DO46325
0 years, female, NA, stage:III, dead, 477 days
401.0
DO46560
0 years, female, NA, stage:IV, dead, 286 days
388.0
DO46342
0 years, female, NA, stage:III, dead, 1398 days
351.5
DO46508
0 years, female, NA, stage:III, dead, 2101 days
349.7
DO46400
0 years, female, NA, stage:III, dead, 719 days
324.7
DO46432
0 years, female, NA, stage:III, alive, 2218 days
319.5
DO46493
0 years, female, NA, stage:IV, alive, 839 days
300.3
DO46443
0 years, female, NA, stage:III, dead, 2464 days
290.3
DO46538
0 years, female, NA, stage:III, dead, 1527 days
286.2
DO46336
0 years, female, NA, stage:IV, dead, 664 days
278.1
DO46348
0 years, female, NA, stage:IV, dead, 287 days
271.8
DO46390
0 years, female, NA, stage:III, dead, 374 days
270.5
DO46597
0 years, female, NA, stage:III, dead, 393 days
266.3
DO46518
0 years, female, NA, stage:III, alive, 2960 days
265.3
DO46372
0 years, female, NA, stage:III, dead, 1326 days
263.4
DO46382
0 years, female, NA, stage:IV, dead, 311 days
261.5
DO46396
0 years, female, NA, stage:III, dead, 583 days
260.9
DO46576
0 years, female, NA, stage:III, alive, 133 days
244.4
DO46358
0 years, female, NA, stage:III, dead, 423 days
243.0
DO46352
0 years, female, NA, stage:III, dead, 677 days
238.8
DO46364
0 years, female, NA, stage:III, dead, 806 days
234.5
DO46394
0 years, female, NA, stage:IV, dead, 1039 days
230.3
DO46330
0 years, female, NA, stage:III, dead, 684 days
222.0
DO46408
0 years, female, NA, stage:III, dead, 489 days
220.5
DO46566
0 years, female, NA, stage:III, dead, 673 days
219.8
DO46453
0 years, female, NA, stage:III, dead, 3294 days
207.8
DO46328
0 years, female, NA, stage:III, dead, 972 days
200.1
DO46606
0 years, female, NA, stage:III, alive, 804 days
199.4
DO46338
0 years, female, NA, stage:III, dead, 596 days
192.4
DO46513
0 years, female, NA, stage:IV, dead, 1883 days
189.3
DO46398
0 years, female, NA, stage:III, alive, 437 days
184.6
DO46528
0 years, female, NA, stage:III, alive, 6139 days
183.4
DO46438
0 years, female, NA, stage:IV, alive, 2227 days
181.4
DO46468
0 years, female, NA, stage:III, alive, 2776 days
179.8
DO46362
0 years, female, NA, stage:III, dead, 1639 days
167.4
DO46591
0 years, female, NA, stage:III, dead, 195 days
164.3
DO46463
0 years, female, NA, stage:III, dead, 2451 days
162.5
DO46333
0 years, female, NA, stage:III, dead, 359 days
157.3
DO46404
0 years, female, NA, stage:III, dead, 690 days
155.1
DO46384
0 years, female, NA, stage:III, dead, 614 days
153.4
DO46533
0 years, female, NA, stage:III, alive, 3667 days
152.6
DO46370
0 years, female, NA, stage:III, dead, 1727 days
151.8
DO46368
0 years, female, NA, stage:III, dead, 2879 days
145.4
DO46356
0 years, female, NA, stage:III, dead, 911 days
142.3
DO46581
0 years, female, NA, stage:III, dead, 408 days
141.3
DO46586
0 years, female, NA, stage:III, dead, 1019 days
135.5
DO46366
0 years, female, NA, stage:III, dead, 2054 days
133.1
DO46602
0 years, female, NA, stage:III, dead, 205 days
132.8
DO46412
0 years, female, NA, stage:III, dead, 597 days
131.8
DO46458
0 years, female, NA, stage:IV, alive, 3787 days
128.9
DO46378
0 years, female, NA, stage:III, alive, 843 days
125.3
DO46588
0 years, female, NA, stage:III, dead, 438 days
124.6
DO46326
0 years, female, NA, stage:III, dead, 701 days
106.0
DO46350
0 years, female, NA, stage:III, dead, 886 days
99.6
DO46402
0 years, female, NA, stage:III, dead, 511 days
94.3
DO46523
0 years, female, NA, stage:IV, alive, 1873 days
93.8
DO46561
0 years, female, NA, stage:III, dead, 195 days
85.1
DO46376
0 years, female, NA, stage:III, dead, 1430 days
80.8
DO46611
0 years, female, NA, stage:III, dead, 734 days
73.0
DO46331
0 years, female, NA, stage:III, dead, 612 days
57.7
DO46546
0 years, female, NA, stage:III, dead, 1889 days
43.2
DO46428
0 years, female, NA, stage:IV, alive, 2644 days
14.4
Show allShow less
OVARY SEROUS CYSTADENOCARCINOMA - Protein relative expression (CPTAC)
Number of samples
108
Samples
Sample ID
Sample type
nRPX
e3ebe010-cd31-4b5d-8fcb-b7103b_D2
Tumor
N/A
1556af7e-c2ae-4fce-9aae-87c459_D1_D2
Normal
N/A
21efd60f-6a31-4b98-9477-16a905_D2
Normal
N/A
b22659b9-e12c-4725-a7db-a833de_D1_D2
Normal
N/A
3946a96c-e0ae-442f-83b4-a9350e_D2
Tumor
N/A
285fed94-1495-448e-879b-b55de9_D2
Tumor
N/A
d109a3c0-350e-47f5-bda0-61899c_D2
Tumor
N/A
a583d3ff-8165-43e9-b764-23b7ef_D1_D2
Normal
N/A
9a7a86d3-bbf2-4d36-941d-c75c03_D1_D2
Tumor
N/A
6e209757-a7f4-45af-b5f3-2ebc02_D2
Normal
N/A
8ed739dd-ae0f-4881-971a-db3cf4_D1_D2
Normal
N/A
ce1e5dfc-2ef1-4633-af93-5ea4d9_D2
Tumor
N/A
91b287fd-eadb-442d-abcd-20b741_D2
Tumor
N/A
a8853382-b726-4ce8-98d5-ca89df_D2
Tumor
N/A
eb3f3494-7057-4afe-b212-e6e9a3_D2
Tumor
N/A
2f901c90-617e-46da-9fac-d68369_D2
Tumor
N/A
41d0619e-b299-42e2-ac32-29e784_D2
Tumor
N/A
efc971f8-54c5-4531-a792-705ecf_D2
Tumor
N/A
1de8d3d8-fc0e-4be0-8aa7-127c7b_D2
Tumor
N/A
05387aad-2a1f-42c2-8d6f-950598_D3
Tumor
N/A
558333b0-ea23-4303-9e3c-4932b1_D2
Tumor
N/A
d38f40fb-dd78-43b2-8b7b-4b6977_D2
Tumor
N/A
1c9145ad-1981-4871-aa7e-8b11de_D2
Tumor
N/A
318d53c3-216b-4de1-a098-77d6dd_D2
Tumor
N/A
3a380577-c134-47ba-a1ce-988d7c_D2
Tumor
N/A
7d953d1d-84b6-4ecd-b1d7-1ed865_D2
Tumor
N/A
256ac9f5-1e19-44b4-92fb-fef3fc_D2
Tumor
N/A
46c73531-f531-4ec3-97fe-b39d9d_D2
Tumor
N/A
a03d1103-b809-42c4-ad5c-5aff58_D2
Tumor
N/A
6530147a-efe9-4df6-ac2f-03ece3_D2
Tumor
N/A
0745488e-0bfb-4d1f-8228-dedf76_D1_D2
Normal
N/A
e23eb014-69c1-460a-b9d4-9786c8_D2
Normal
N/A
7069e990-4a4e-4984-a66d-4d835a_D2
Tumor
N/A
627e6e36-3dca-4ee5-9755-6f3510_D2
Tumor
N/A
3e746bea-ed68-40e6-b348-6ddf08_D2
Normal
N/A
1772e913-f62e-446a-8cf3-720348_D2
Tumor
N/A
e9d416e7-f661-400a-896e-388545_D2
Tumor
N/A
e6850782-fd2a-4c53-b682-1852fe_D2
Tumor
N/A
79b60f32-6cca-4cb6-9a1e-22a3ac_D2
Tumor
N/A
3dcf8b3c-c0c5-4dfa-9543-5d30fb_D2
Tumor
N/A
8e17b45e-6a06-4e4e-913d-7b1edb_D2
Tumor
N/A
f6c215ea-5381-4521-bb61-be8e97_D2
Tumor
N/A
2ed8beb2-bc63-4bad-b5fe-1916a0_D2
Tumor
N/A
2563cb02-d58a-4286-8634-7502cd_D2
Tumor
N/A
50997c44-1c8b-4d34-b535-4a6cc2_D2
Tumor
N/A
42d860a3-8a0c-4c44-a09a-9ad8cf_D2
Tumor
N/A
2dc28da8-7ff1-4b9b-b5bd-17cc25_D2
Tumor
N/A
1abbcb28-f221-4cd4-8c01-37b9bb_D1_D2
Normal
N/A
69d552be-7cb2-4bb4-b602-a27b3e_D2
Tumor
N/A
51a4ce2f-4166-4c6b-a7e0-942d0a_D2
Tumor
N/A
10c2d629-0287-4511-ac25-f29031_D2
Tumor
N/A
2224c03f-b7b1-4368-887e-2b4cdf_D2
Tumor
N/A
2b73e01c-347a-4dae-a71d-752aeb_D2
Normal
N/A
76e77c6b-c80e-4391-bdbb-e1dcea_D2
Tumor
N/A
e7b656bf-3c34-4ba1-bdf3-c7eefe_D2
Tumor
N/A
eb0a53df-7620-4024-8d2d-051142_D2
Tumor
N/A
80873a0c-1f40-4d51-bab1-3f2071_D2
Tumor
N/A
340a3769-3031-41ae-bb08-a2f696_D2
Normal
N/A
2433b136-fc7b-4cea-b958-bc6efb_D2
Tumor
N/A
994f9b8e-46cb-413f-8ec8-2c2fed_D2
Normal
N/A
2115808b-6a0d-49bc-a8d7-b83bde_D2
Tumor
N/A
5ea22f5e-307b-491d-801f-8b7fa6_D2
Tumor
N/A
af95e2c6-25c4-4ab8-bf06-3e15ff_D2
Tumor
N/A
49bd51fe-48a1-4828-b66e-b30c38_D2
Tumor
N/A
08296da7-70ea-44df-8646-09f2cc_D2
Tumor
N/A
31c15e30-21d4-4843-bd4a-9cd0d8_D2
Normal
N/A
685ec3c2-e67a-40d3-9eb3-aa01c9_D1_D2
Normal
N/A
51c1c79e-5a8e-4b0a-bf92-1c0cab_D2
Tumor
N/A
3fbf076a-824b-4eac-b6dc-bf5e59_D2
Normal
N/A
1b2ab076-c72f-4bbe-b9f9-657d24_D2
Tumor
N/A
2b4ce90c-8036-4207-ac3e-54a76f_D2
Tumor
N/A
c17b0ff9-9057-4848-a0cc-abb25f_D2
Tumor
N/A
52c064a7-78d9-4a1a-85b4-27c6d1_D2
Tumor
N/A
15524912-685a-47ce-a824-567848_D2
Tumor
N/A
bd266bdd-12e4-42cb-9c49-911bfc_D2
Tumor
N/A
927f0958-db5a-4bc5-92b7-2a3695_D2
Tumor
N/A
d4791079-c826-4fc7-9d9b-ee20ba_D2
Tumor
N/A
35a345a4-e954-4c81-ae3f-7797cd_D2
Tumor
N/A
0cc794c3-5bf5-4621-b238-58a0f6_D2
Tumor
N/A
3490835c-c004-45ed-91f3-7c206f_D2
Tumor
N/A
a3a26070-fb84-406a-8280-d555e6_D2
Normal
N/A
161317f3-1a39-438e-af45-cd2502_D2
Tumor
N/A
fe83e13f-9754-403b-8f74-d6caf8_D2
Tumor
N/A
1db5574d-aca7-403c-8100-6e705f_D2
Normal
N/A
4ccb249a-6722-491e-97e9-e3b4e7_D2
Tumor
N/A
9b90eb78-2f50-4aeb-b010-d642f9_D2
Tumor
N/A
b9c1f22e-61f7-45ed-b3b4-5094c7_D2
Normal
N/A
8d78194e-fbef-4819-a7b5-b73ae9_D2
Tumor
N/A
7edfd606-4bee-4529-9fec-1ca7f0_D2
Normal
N/A
3d3e1888-d67e-4c69-ba83-112d0f_D2
Tumor
N/A
28d0abdb-f682-4bd3-9425-a9c508_D2
Tumor
N/A
61f76fe6-a1c6-41b8-bdc2-2f9209_D2
Normal
N/A
6319b36b-533c-4e86-8e12-80552e_D3
Tumor
N/A
0c87932d-b6fd-4eb5-b86a-a34d07_D2
Tumor
N/A
7c7ce2d7-6c8a-424e-8e6c-d14ad1_D2
Tumor
N/A
092af714-b97a-457c-b0e9-8c20e8_D2
Normal
N/A
62f5840e-6cd7-4200-b651-645e53_D2
Tumor
N/A
74a45e5a-a35a-4c60-a4b4-f3f5ea_D2
Tumor
N/A
347e379b-77c0-4dd3-aa25-18c9d1_D2
Tumor
N/A
5c3971ee-87c7-4dff-b66e-f18892_D2
Tumor
N/A
cfd76f9a-ce60-4ec7-8e6b-a8fc31_D3
Tumor
N/A
27f3ca2d-a86f-479d-8e7e-5307c7_D2
Tumor
N/A
a65d8e76-640f-4341-a561-afbb57_D2
Normal
N/A
fbb41c94-aabd-49cc-90b2-882c3e_D2
Tumor
N/A
1a10c200-3895-4648-b951-94f99f_D2
Tumor
N/A
9e0d47e0-f633-468b-b82b-4d752d_D2
Tumor
N/A
8234f8ea-bdbd-45b0-bd0b-16f1e7_D2
Tumor
N/A
9c8e78bf-b03e-4ba0-9909-5ff070_D2
Tumor
N/A
Show allShow less
OVARIAN CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.