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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF40 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
56.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
38.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF40 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.2
497
Tumor
1.1
957
Tumor
1.0
965
Tumor
0.9
951
Tumor
0.8
967
Tumor
0.7
523
Tumor
0.7
473
Tumor
0.7
663
Tumor
0.7
355
Tumor
0.7
743
Tumor
0.7
923
Tumor
0.7
865
Tumor
0.7
661
Tumor
0.6
331
Tumor
0.6
647
Tumor
0.6
813
Tumor
0.6
977
Tumor
0.6
921
Tumor
0.6
425
Tumor
0.6
545
Tumor
0.6
411
Tumor
0.6
724
Normal
0.6
487
Tumor
0.6
211
Tumor
0.6
937
Tumor
0.6
533
Tumor
0.6
313
Tumor
0.6
695
Tumor
0.5
131
Tumor
0.5
161
Tumor
0.5
777
Tumor
0.5
685
Tumor
0.5
817
Tumor
0.5
737
Tumor
0.5
943
Tumor
0.5
357
Tumor
0.5
814
Normal
0.5
877
Tumor
0.5
351
Tumor
0.5
983
Tumor
0.5
1021
Tumor
0.5
641
Tumor
0.4
953
Tumor
0.4
917
Tumor
0.4
727
Tumor
0.4
1031
Tumor
0.4
477
Tumor
0.4
883
Tumor
0.4
517
Tumor
0.4
385
Tumor
0.4
535
Tumor
0.4
277
Tumor
0.4
123
Tumor
0.4
553
Tumor
0.4
1027
Tumor
0.4
367
Tumor
0.3
463
Tumor
0.3
1025
Tumor
0.3
491
Tumor
0.3
465
Tumor
0.3
297
Tumor
0.3
447
Tumor
0.3
383
Tumor
0.3
881
Tumor
0.3
221
Tumor
0.3
431
Tumor
0.3
527
Tumor
0.3
311
Tumor
0.3
483
Tumor
0.3
975
Tumor
0.3
343
Tumor
0.3
413
Tumor
0.3
573
Tumor
0.3
393
Tumor
0.3
671
Tumor
0.3
815
Tumor
0.3
427
Tumor
0.3
963
Tumor
0.2
341
Tumor
0.2
515
Tumor
0.2
391
Tumor
0.2
665
Tumor
0.2
493
Tumor
0.2
285
Tumor
0.2
271
Tumor
0.2
925
Tumor
0.2
283
Tumor
0.2
217
Tumor
0.2
741
Tumor
0.2
213
Tumor
0.2
525
Tumor
0.2
127
Tumor
0.2
537
Tumor
0.2
227
Tumor
0.2
415
Tumor
0.2
223
Tumor
0.2
387
Tumor
0.1
461
Tumor
0.1
721
Tumor
0.1
567
Tumor
0.1
915
Tumor
0.1
536
Normal
0.1
467
Tumor
0.1
498
Normal
0.1
231
Tumor
0.1
443
Tumor
0.1
571
Tumor
0.1
513
Tumor
0.1
492
Normal
0.1
635
Tumor
0.1
471
Tumor
0.1
913
Tumor
0.1
863
Tumor
0.1
455
Tumor
0.1
697
Tumor
0.1
524
Normal
0.1
141
Tumor
0.1
187
Tumor
0.1
715
Tumor
0.1
1041
Tumor
0.1
984
Normal
0.1
873
Tumor
0.1
861
Tumor
0.1
433
Tumor
0.1
538
Normal
0.0
857
Tumor
0.0
171
Tumor
0.0
125
Tumor
0.0
478
Normal
0.0
755
Tumor
0.0
147
Tumor
0.0
267
Tumor
0.0
423
Tumor
0.0
978
Normal
0.0
327
Tumor
0.0
484
Normal
0.0
257
Tumor
0.0
867
Tumor
0.0
361
Tumor
0.0
954
Normal
0.0
1014
Normal
0.0
191
Tumor
0.0
981
Tumor
0.0
185
Tumor
0.0
823
Tumor
0.0
395
Tumor
0.0
488
Normal
0.0
756
Normal
0.0
481
Tumor
0.0
444
Normal
0.0
916
Normal
0.0
516
Normal
0.0
554
Normal
0.0
966
Normal
0.0
716
Normal
0.0
563
Tumor
0.0
412
Normal
0.0
955
Tumor
0.0
435
Tumor
0.0
224
Normal
0.0
938
Normal
0.0
696
Normal
0.0
137
Tumor
0.0
818
Normal
0.0
924
Normal
0.0
342
Normal
0.0
1015
Tumor
0.0
112
Tumor
-0.1
365
Tumor
-0.1
534
Normal
-0.1
218
Normal
-0.1
686
Normal
-0.1
195
Tumor
-0.1
785
Tumor
-0.1
384
Normal
-0.1
858
Normal
-0.1
852
Normal
-0.1
1043
Tumor
-0.1
964
Normal
-0.1
874
Normal
-0.1
451
Tumor
-0.1
192
Normal
-0.1
958
Normal
-0.1
862
Normal
-0.1
976
Normal
-0.1
864
Normal
-0.1
284
Normal
-0.1
944
Normal
-0.1
851
Tumor
-0.1
328
Normal
-0.1
312
Normal
-0.1
546
Normal
-0.1
212
Normal
-0.1
416
Normal
-0.1
824
Normal
-0.1
364
Normal
-0.1
514
Normal
-0.1
528
Normal
-0.1
926
Normal
-0.1
968
Normal
-0.1
494
Normal
-0.1
922
Normal
-0.1
482
Normal
-0.1
375
Tumor
-0.1
778
Normal
-0.1
268
Normal
-0.1
526
Normal
-0.1
1016
Normal
-0.1
113
Tumor
-0.1
352
Normal
-0.1
314
Normal
-0.1
982
Normal
-0.1
866
Normal
-0.1
786
Normal
-0.1
286
Normal
-0.1
912
Normal
-0.1
363
Tumor
-0.1
918
Normal
-0.1
816
Normal
-0.1
368
Normal
-0.1
956
Normal
-0.1
344
Normal
-0.1
672
Normal
-0.1
616
Normal
-0.1
744
Normal
-0.1
356
Normal
-0.1
868
Normal
-0.1
1032
Normal
-0.1
445
Tumor
-0.1
261
Tumor
-0.1
617
Tumor
-0.1
574
Normal
-0.2
878
Normal
-0.2
713
Tumor
-0.2
745
Tumor
-0.2
196
Normal
-0.2
386
Normal
-0.2
882
Normal
-0.2
472
Normal
-0.2
1028
Normal
-0.2
518
Normal
-0.2
952
Normal
-0.2
145
Tumor
-0.2
636
Normal
-0.2
142
Normal
-0.2
332
Normal
-0.2
222
Normal
-0.2
448
Normal
-0.2
376
Normal
-0.2
722
Normal
-0.2
421
Tumor
-0.2
354
Normal
-0.2
666
Normal
-0.2
353
Tumor
-0.2
884
Normal
-0.2
396
Normal
-0.2
664
Normal
-0.2
434
Normal
-0.2
723
Tumor
-0.2
188
Normal
-0.2
1045
Tumor
-0.2
662
Normal
-0.2
462
Normal
-0.2
135
Tumor
-0.2
572
Normal
-0.2
728
Normal
-0.2
698
Normal
-0.2
298
Normal
-0.2
228
Normal
-0.2
558
Normal
-0.2
278
Normal
-0.2
1044
Normal
-0.2
628
Normal
-0.2
618
Normal
-0.2
358
Normal
-0.2
366
Normal
-0.2
742
Normal
-0.2
362
Normal
-0.2
392
Normal
-0.2
1026
Normal
-0.2
262
Normal
-0.2
394
Normal
-0.2
615
Tumor
-0.2
148
Normal
-0.2
1046
Normal
-0.2
146
Normal
-0.2
388
Normal
-0.2
557
Tumor
-0.2
648
Normal
-0.2
214
Normal
-0.2
474
Normal
-0.2
186
Normal
-0.2
126
Normal
-0.3
162
Normal
-0.3
1042
Normal
-0.3
642
Normal
-0.3
272
Normal
-0.3
911
Tumor
-0.3
738
Normal
-0.3
746
Normal
-0.3
564
Normal
-0.3
258
Normal
-0.3
124
Normal
-0.3
714
Normal
-0.3
914
Normal
-0.3
114
Normal
-0.3
1022
Normal
-0.3
446
Normal
-0.3
627
Tumor
-0.3
128
Normal
-0.3
568
Normal
-0.3
466
Normal
-0.3
426
Normal
-0.3
172
Normal
-0.3
111
Normal
-0.4
464
Normal
-0.4
436
Normal
-0.4
456
Normal
-0.4
138
Normal
-0.4
468
Normal
-0.4
428
Normal
-0.4
232
Normal
-0.4
136
Normal
-0.4
422
Normal
-0.4
132
Normal
-0.4
432
Normal
-0.5
452
Normal
-0.5
424
Normal
-0.5
414
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
