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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSPT1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
90.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
86.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
80.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
74.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
71.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
69.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
59.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
58.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
54.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
52.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
52.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
51.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
49.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
48.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
47.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
47.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
44.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
40.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
37.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
25.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSPT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.1
724
Normal
0.7
965
Tumor
0.7
663
Tumor
0.6
395
Tumor
0.6
697
Tumor
0.6
231
Tumor
0.5
497
Tumor
0.5
351
Tumor
0.5
813
Tumor
0.5
715
Tumor
0.4
527
Tumor
0.4
171
Tumor
0.4
545
Tumor
0.4
211
Tumor
0.4
573
Tumor
0.4
355
Tumor
0.4
957
Tumor
0.4
777
Tumor
0.3
817
Tumor
0.3
473
Tumor
0.3
685
Tumor
0.3
387
Tumor
0.3
925
Tumor
0.3
535
Tumor
0.3
477
Tumor
0.3
557
Tumor
0.3
465
Tumor
0.3
695
Tumor
0.3
525
Tumor
0.3
523
Tumor
0.3
915
Tumor
0.3
461
Tumor
0.3
911
Tumor
0.3
393
Tumor
0.3
943
Tumor
0.3
223
Tumor
0.3
447
Tumor
0.3
647
Tumor
0.3
977
Tumor
0.3
627
Tumor
0.2
357
Tumor
0.2
1015
Tumor
0.2
367
Tumor
0.2
567
Tumor
0.2
861
Tumor
0.2
313
Tumor
0.2
513
Tumor
0.2
967
Tumor
0.2
953
Tumor
0.2
327
Tumor
0.2
127
Tumor
0.2
983
Tumor
0.2
571
Tumor
0.2
515
Tumor
0.2
391
Tumor
0.2
963
Tumor
0.2
135
Tumor
0.2
533
Tumor
0.2
661
Tumor
0.2
917
Tumor
0.2
311
Tumor
0.2
814
Normal
0.2
923
Tumor
0.2
427
Tumor
0.2
161
Tumor
0.2
491
Tumor
0.1
451
Tumor
0.1
755
Tumor
0.1
365
Tumor
0.1
745
Tumor
0.1
981
Tumor
0.1
937
Tumor
0.1
141
Tumor
0.1
383
Tumor
0.1
913
Tumor
0.1
851
Tumor
0.1
267
Tumor
0.1
966
Normal
0.1
537
Tumor
0.1
1041
Tumor
0.1
411
Tumor
0.1
297
Tumor
0.1
455
Tumor
0.1
481
Tumor
0.1
353
Tumor
0.1
617
Tumor
0.1
1021
Tumor
0.1
435
Tumor
0.1
665
Tumor
0.1
867
Tumor
0.1
474
Normal
0.1
785
Tumor
0.1
874
Normal
0.1
635
Tumor
0.0
713
Tumor
0.0
746
Normal
0.0
978
Normal
0.0
721
Tumor
0.0
955
Tumor
0.0
257
Tumor
0.0
741
Tumor
0.0
343
Tumor
0.0
938
Normal
0.0
261
Tumor
0.0
123
Tumor
0.0
187
Tumor
0.0
147
Tumor
0.0
568
Normal
0.0
493
Tumor
0.0
518
Normal
0.0
487
Tumor
0.0
375
Tumor
0.0
482
Normal
0.0
228
Normal
0.0
1028
Normal
0.0
944
Normal
0.0
436
Normal
0.0
1044
Normal
0.0
982
Normal
0.0
445
Tumor
0.0
1014
Normal
0.0
448
Normal
0.0
714
Normal
0.0
128
Normal
0.0
778
Normal
0.0
137
Tumor
0.0
1046
Normal
0.0
286
Normal
0.0
824
Normal
0.0
1045
Tumor
0.0
926
Normal
0.0
873
Tumor
0.0
865
Tumor
0.0
536
Normal
0.0
952
Normal
0.0
666
Normal
0.0
648
Normal
0.0
195
Tumor
0.0
956
Normal
0.0
331
Tumor
0.0
964
Normal
0.0
918
Normal
0.0
131
Tumor
0.0
696
Normal
0.0
951
Tumor
0.0
954
Normal
0.0
484
Normal
0.0
916
Normal
0.0
358
Normal
0.0
1022
Normal
0.0
212
Normal
0.0
1016
Normal
0.0
471
Tumor
0.0
385
Tumor
-0.1
686
Normal
-0.1
968
Normal
-0.1
113
Tumor
-0.1
462
Normal
-0.1
816
Normal
-0.1
976
Normal
-0.1
868
Normal
-0.1
862
Normal
-0.1
558
Normal
-0.1
433
Tumor
-0.1
866
Normal
-0.1
224
Normal
-0.1
864
Normal
-0.1
628
Normal
-0.1
554
Normal
-0.1
742
Normal
-0.1
924
Normal
-0.1
1026
Normal
-0.1
574
Normal
-0.1
664
Normal
-0.1
662
Normal
-0.1
222
Normal
-0.1
564
Normal
-0.1
723
Tumor
-0.1
563
Tumor
-0.1
546
Normal
-0.1
472
Normal
-0.1
423
Tumor
-0.1
394
Normal
-0.1
852
Normal
-0.1
922
Normal
-0.1
283
Tumor
-0.1
728
Normal
-0.1
786
Normal
-0.1
815
Tumor
-0.1
284
Normal
-0.1
538
Normal
-0.1
142
Normal
-0.1
716
Normal
-0.1
285
Tumor
-0.1
615
Tumor
-0.1
341
Tumor
-0.1
498
Normal
-0.1
572
Normal
-0.1
738
Normal
-0.1
388
Normal
-0.1
258
Normal
-0.1
126
Normal
-0.1
492
Normal
-0.1
466
Normal
-0.1
698
Normal
-0.1
392
Normal
-0.1
878
Normal
-0.1
722
Normal
-0.1
416
Normal
-0.1
342
Normal
-0.1
478
Normal
-0.1
912
Normal
-0.1
984
Normal
-0.1
111
Normal
-0.1
514
Normal
-0.1
412
Normal
-0.1
618
Normal
-0.1
125
Tumor
-0.1
185
Tumor
-0.1
272
Normal
-0.1
672
Normal
-0.1
386
Normal
-0.1
431
Tumor
-0.1
145
Tumor
-0.1
188
Normal
-0.1
262
Normal
-0.1
857
Tumor
-0.1
298
Normal
-0.1
818
Normal
-0.1
517
Tumor
-0.1
446
Normal
-0.1
162
Normal
-0.1
756
Normal
-0.1
526
Normal
-0.1
227
Tumor
-0.1
975
Tumor
-0.1
914
Normal
-0.1
434
Normal
-0.1
278
Normal
-0.1
468
Normal
-0.1
148
Normal
-0.1
217
Tumor
-0.1
328
Normal
-0.1
858
Normal
-0.2
396
Normal
-0.2
186
Normal
-0.2
467
Tumor
-0.2
881
Tumor
-0.2
364
Normal
-0.2
362
Normal
-0.2
172
Normal
-0.2
528
Normal
-0.2
422
Normal
-0.2
534
Normal
-0.2
642
Normal
-0.2
727
Tumor
-0.2
516
Normal
-0.2
196
Normal
-0.2
958
Normal
-0.2
743
Tumor
-0.2
361
Tumor
-0.2
354
Normal
-0.2
114
Normal
-0.2
671
Tumor
-0.2
464
Normal
-0.2
191
Tumor
-0.2
524
Normal
-0.2
877
Tumor
-0.2
314
Normal
-0.2
312
Normal
-0.2
414
Normal
-0.2
424
Normal
-0.2
1025
Tumor
-0.2
232
Normal
-0.2
616
Normal
-0.2
136
Normal
-0.2
883
Tumor
-0.2
268
Normal
-0.2
112
Tumor
-0.2
488
Normal
-0.2
432
Normal
-0.2
413
Tumor
-0.2
356
Normal
-0.2
132
Normal
-0.2
444
Normal
-0.2
884
Normal
-0.2
376
Normal
-0.2
428
Normal
-0.2
494
Normal
-0.2
882
Normal
-0.2
1043
Tumor
-0.2
1042
Normal
-0.2
332
Normal
-0.2
366
Normal
-0.2
452
Normal
-0.2
344
Normal
-0.2
456
Normal
-0.2
384
Normal
-0.2
138
Normal
-0.2
415
Tumor
-0.2
737
Tumor
-0.2
443
Tumor
-0.2
1032
Normal
-0.2
146
Normal
-0.2
218
Normal
-0.2
214
Normal
-0.2
124
Normal
-0.3
352
Normal
-0.3
421
Tumor
-0.3
426
Normal
-0.3
1027
Tumor
-0.3
636
Normal
-0.3
823
Tumor
-0.3
368
Normal
-0.3
192
Normal
-0.3
744
Normal
-0.3
271
Tumor
-0.3
363
Tumor
-0.3
277
Tumor
-0.3
483
Tumor
-0.3
1031
Tumor
-0.3
921
Tumor
-0.3
463
Tumor
-0.4
641
Tumor
-0.4
553
Tumor
-0.4
213
Tumor
-0.4
863
Tumor
-0.4
221
Tumor
-0.5
425
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
