We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
36.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
19.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
34.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.3
487
Tumor
1.0
267
Tumor
0.8
951
Tumor
0.7
535
Tumor
0.7
327
Tumor
0.7
413
Tumor
0.6
724
Normal
0.6
743
Tumor
0.6
777
Tumor
0.5
913
Tumor
0.5
351
Tumor
0.5
537
Tumor
0.5
391
Tumor
0.5
965
Tumor
0.5
113
Tumor
0.5
715
Tumor
0.4
815
Tumor
0.4
141
Tumor
0.4
481
Tumor
0.4
955
Tumor
0.4
617
Tumor
0.4
981
Tumor
0.4
755
Tumor
0.3
484
Normal
0.3
912
Normal
0.3
545
Tumor
0.3
877
Tumor
0.3
964
Normal
0.3
231
Tumor
0.3
978
Normal
0.3
261
Tumor
0.3
368
Normal
0.3
1041
Tumor
0.3
356
Normal
0.3
497
Tumor
0.3
353
Tumor
0.3
937
Tumor
0.3
635
Tumor
0.3
865
Tumor
0.3
367
Tumor
0.3
616
Normal
0.3
713
Tumor
0.3
187
Tumor
0.3
395
Tumor
0.3
863
Tumor
0.3
488
Normal
0.3
554
Normal
0.3
741
Tumor
0.3
685
Tumor
0.3
533
Tumor
0.3
938
Normal
0.2
131
Tumor
0.2
926
Normal
0.2
466
Normal
0.2
861
Tumor
0.2
376
Normal
0.2
866
Normal
0.2
944
Normal
0.2
923
Tumor
0.2
1046
Normal
0.2
387
Tumor
0.2
628
Normal
0.2
868
Normal
0.2
446
Normal
0.2
884
Normal
0.2
528
Normal
0.2
661
Tumor
0.2
696
Normal
0.2
727
Tumor
0.2
911
Tumor
0.2
557
Tumor
0.2
1014
Normal
0.2
546
Normal
0.2
514
Normal
0.2
494
Normal
0.2
534
Normal
0.2
943
Tumor
0.2
862
Normal
0.2
1045
Tumor
0.2
463
Tumor
0.2
922
Normal
0.2
432
Normal
0.2
482
Normal
0.2
786
Normal
0.2
968
Normal
0.2
1026
Normal
0.2
232
Normal
0.2
983
Tumor
0.2
285
Tumor
0.2
873
Tumor
0.2
721
Tumor
0.2
882
Normal
0.2
415
Tumor
0.2
1016
Normal
0.2
298
Normal
0.2
756
Normal
0.2
526
Normal
0.2
132
Normal
0.2
864
Normal
0.2
723
Tumor
0.2
436
Normal
0.2
451
Tumor
0.2
918
Normal
0.2
618
Normal
0.2
977
Tumor
0.2
714
Normal
0.2
433
Tumor
0.2
286
Normal
0.2
128
Normal
0.2
464
Normal
0.2
135
Tumor
0.2
314
Normal
0.2
785
Tumor
0.2
967
Tumor
0.1
742
Normal
0.1
136
Normal
0.1
127
Tumor
0.1
212
Normal
0.1
145
Tumor
0.1
1015
Tumor
0.1
222
Normal
0.1
258
Normal
0.1
1028
Normal
0.1
738
Normal
0.1
196
Normal
0.1
958
Normal
0.1
284
Normal
0.1
148
Normal
0.1
468
Normal
0.1
572
Normal
0.1
636
Normal
0.1
976
Normal
0.1
824
Normal
0.1
518
Normal
0.1
142
Normal
0.1
982
Normal
0.1
412
Normal
0.1
474
Normal
0.1
778
Normal
0.1
493
Tumor
0.1
186
Normal
0.1
364
Normal
0.1
332
Normal
0.1
448
Normal
0.1
567
Tumor
0.1
383
Tumor
0.1
221
Tumor
0.1
162
Normal
0.1
966
Normal
0.1
358
Normal
0.1
428
Normal
0.1
1042
Normal
0.1
524
Normal
0.1
952
Normal
0.1
361
Tumor
0.1
363
Tumor
0.1
921
Tumor
0.1
472
Normal
0.1
1032
Normal
0.1
388
Normal
0.1
362
Normal
0.1
462
Normal
0.1
384
Normal
0.1
492
Normal
0.1
447
Tumor
0.1
664
Normal
0.1
366
Normal
0.1
272
Normal
0.1
123
Tumor
0.1
722
Normal
0.1
278
Normal
0.1
172
Normal
0.1
881
Tumor
0.1
746
Normal
0.1
857
Tumor
0.1
954
Normal
0.1
161
Tumor
0.1
858
Normal
0.1
648
Normal
0.1
564
Normal
0.1
228
Normal
0.1
114
Normal
0.1
814
Normal
0.1
331
Tumor
0.1
227
Tumor
0.1
728
Normal
0.1
716
Normal
0.1
467
Tumor
0.1
917
Tumor
0.1
352
Normal
0.1
191
Tumor
0.1
111
Normal
0.1
867
Tumor
0.1
478
Normal
0.1
536
Normal
0.1
452
Normal
0.1
558
Normal
0.1
171
Tumor
0.1
642
Normal
0.1
627
Tumor
0.1
666
Normal
0.1
456
Normal
0.1
984
Normal
0.1
568
Normal
0.1
662
Normal
0.1
963
Tumor
0.1
1022
Normal
0.0
916
Normal
0.0
392
Normal
0.0
138
Normal
0.0
914
Normal
0.0
262
Normal
0.0
414
Normal
0.0
671
Tumor
0.0
517
Tumor
0.0
188
Normal
0.0
396
Normal
0.0
663
Tumor
0.0
516
Normal
0.0
394
Normal
0.0
416
Normal
0.0
698
Normal
0.0
817
Tumor
0.0
956
Normal
0.0
424
Normal
0.0
354
Normal
0.0
434
Normal
0.0
1025
Tumor
0.0
342
Normal
0.0
312
Normal
0.0
1044
Normal
0.0
878
Normal
0.0
744
Normal
0.0
126
Normal
0.0
218
Normal
0.0
445
Tumor
0.0
686
Normal
0.0
975
Tumor
0.0
523
Tumor
0.0
328
Normal
0.0
311
Tumor
0.0
112
Tumor
0.0
665
Tumor
0.0
813
Tumor
0.0
852
Normal
0.0
924
Normal
0.0
421
Tumor
0.0
283
Tumor
0.0
483
Tumor
0.0
498
Normal
0.0
268
Normal
0.0
124
Normal
0.0
422
Normal
0.0
386
Normal
0.0
473
Tumor
0.0
818
Normal
0.0
137
Tumor
0.0
574
Normal
0.0
957
Tumor
0.0
525
Tumor
0.0
435
Tumor
-0.1
444
Normal
-0.1
874
Normal
-0.1
426
Normal
-0.1
146
Normal
-0.1
672
Normal
-0.1
217
Tumor
-0.1
192
Normal
-0.1
214
Normal
-0.1
816
Normal
-0.1
344
Normal
-0.1
224
Normal
-0.1
1043
Tumor
-0.1
925
Tumor
-0.1
745
Tumor
-0.1
527
Tumor
-0.1
425
Tumor
-0.1
1031
Tumor
-0.1
538
Normal
-0.1
125
Tumor
-0.1
851
Tumor
-0.1
355
Tumor
-0.1
297
Tumor
-0.1
411
Tumor
-0.1
461
Tumor
-0.1
1021
Tumor
-0.1
375
Tumor
-0.1
1013
Tumor
-0.1
211
Tumor
-0.1
271
Tumor
-0.2
365
Tumor
-0.2
491
Tumor
-0.2
443
Tumor
-0.2
185
Tumor
-0.2
385
Tumor
-0.2
513
Tumor
-0.2
571
Tumor
-0.2
737
Tumor
-0.2
641
Tumor
-0.2
257
Tumor
-0.2
883
Tumor
-0.2
477
Tumor
-0.2
213
Tumor
-0.2
563
Tumor
-0.2
195
Tumor
-0.2
647
Tumor
-0.2
343
Tumor
-0.2
431
Tumor
-0.2
455
Tumor
-0.2
427
Tumor
-0.2
341
Tumor
-0.2
615
Tumor
-0.2
471
Tumor
-0.2
697
Tumor
-0.2
313
Tumor
-0.2
223
Tumor
-0.2
515
Tumor
-0.3
915
Tumor
-0.3
823
Tumor
-0.3
465
Tumor
-0.3
423
Tumor
-0.3
553
Tumor
-0.3
953
Tumor
-0.3
393
Tumor
-0.3
695
Tumor
-0.4
357
Tumor
-0.4
277
Tumor
-0.4
147
Tumor
-0.5
573
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
