We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.1
nTPM
HPA Brain:
41.9
nTPM
GTEx:
24.1
nTPM
FANTOM5:
70.8
Scaled Tags Per Million
Pig:
37.4
nTPM
Mouse:
18.3
nTPM
Allen mouse:
1.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA011740
Antibody HPA014290
Antibody CAB068189
Antibody CAB068190
Glial cells
Not detected
Low
Not detected
Not detected
Neuronal cells
Not detected
High
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 39.7
1911
Female, age 85, right hemisphere
47.3
2529
Female, age 94, left hemisphere
45.5
2621
Female, age 67, right hemisphere
41.4
1855
Male, age 76, left hemisphere
36.3
2148
Female, age 91, left hemisphere
34.7
1898
Male, age 80, left hemisphere
32.8
Dentate gyrus nTPM: 41.0
2530
Female, age 94, left hemisphere
60.8
2010
Male, age 76, both hemispheres
45.6
2531
Female, age 67, both hemispheres
41.7
2528
Male, age 74, both hemispheres
33.2
2246
Female, age 85, both hemispheres
32.7
1927
Female, age 91, both hemispheres
31.9
Entorhinal gyrus nTPM: 27.7
2686
Male, age 75, right hemisphere
36.4
1787
Male, age 76, left hemisphere
31.8
2117
Female, age 91, right hemisphere
26.3
2613
Female, age 94, left hemisphere
24.4
2764
Male, age 80, right hemisphere
23.7
1938
Female, age 85, left hemisphere
23.3
Hippocampus, CA1 nTPM: 35.6
2527
Male, age 74, both hemispheres
44.3
2045
Male, age 76, both hemispheres
40.3
1873
Female, age 85, both hemispheres
33.6
2082
Female, age 91, right hemisphere
29.9
2749
Male, age 80, left hemisphere
29.7
Hippocampus, CA2 nTPM: 39.8
2437
Female, age 94, left hemisphere
52.5
1963
Male, age 80, left hemisphere
48.2
2249
Male, age 74, both hemispheres
38.9
2113
Female, age 91, right hemisphere
36.1
1892
Male, age 76, both hemispheres
35.1
1940
Female, age 85, left hemisphere
28.2
Hippocampus, CA3 nTPM: 41.9
2861
Female, age 67, both hemispheres
62.0
1867
Male, age 76, both hemispheres
45.4
2137
Male, age 80, left hemisphere
41.5
1891
Female, age 85, both hemispheres
37.5
2436
Male, age 74, both hemispheres
34.0
2620
Female, age 94, left hemisphere
31.2
Parahippocampal cortex nTPM: 33.7
2018
Male, age 76, both hemispheres
63.1
2622
Female, age 67, right hemisphere
36.3
2245
Female, age 91, both hemispheres
35.2
2532
Female, age 72, left hemisphere
33.8
1850
Male, age 80, both hemispheres
29.8
2693
Female, age 94, both hemispheres
29.6
2692
Male, age 74, both hemispheres
27.9
1990
Female, age 91, right hemisphere
27.5
2250
Female, age 67, right hemisphere
26.9
1933
Female, age 85, both hemispheres
26.4
Perirhinal gyrus nTPM: 27.8
1841
Female, age 85, right hemisphere
36.8
1794
Male, age 80, right hemisphere
26.4
2848
Male, age 76, right hemisphere
26.4
2521
Female, age 94, right hemisphere
25.3
1847
Female, age 91, left hemisphere
24.2
Subiculum nTPM: 37.0
2042
Male, age 76, both hemispheres
48.2
2438
Female, age 94, left hemisphere
46.8
2619
Male, age 74, both hemispheres
35.4
1901
Male, age 80, both hemispheres
31.0
2729
Female, age 91, right hemisphere
30.8
1977
Female, age 85, both hemispheres
29.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 24.1
Samples: 197
Max nTPM: 132.5
Min nTPM: 1.5
Std nTPM: 18.1
Median nTPM: 18.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
132.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
115.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
102.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
80.9
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
63.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
63.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
60.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
59.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
56.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
56.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
54.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
54.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
53.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
52.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
51.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
50.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
48.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
47.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
47.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
47.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
46.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
46.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
45.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
42.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
42.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
41.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
40.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
40.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
40.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
39.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
38.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
38.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
37.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
35.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
34.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
34.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
34.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
33.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
33.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
32.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
32.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
31.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
31.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
31.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
30.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
30.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
30.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
30.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
28.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
28.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
28.5
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
28.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
27.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
27.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
26.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
26.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
26.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
26.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
25.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
25.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
25.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
25.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
25.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
25.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
24.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
24.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
24.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
24.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
24.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
24.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
23.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
23.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
23.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
23.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
22.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
22.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
22.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
22.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
22.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
22.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
22.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
21.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
21.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
21.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
21.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
21.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
20.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
20.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
20.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
20.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
20.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
20.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
19.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
19.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
19.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
18.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
18.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
18.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
18.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
18.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
18.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
18.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
18.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
18.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
18.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
18.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
17.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
17.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
17.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
17.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
17.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
17.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
16.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
16.8
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
16.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
16.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
16.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
16.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
16.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
16.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
16.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
16.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
15.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
15.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
15.6
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
15.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
15.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
15.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
15.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
15.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
15.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
14.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
14.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
14.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
14.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
14.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
14.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
13.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
13.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
13.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
13.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
13.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
13.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
13.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
13.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
13.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
12.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
12.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
12.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
12.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
12.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
12.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
12.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
12.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
12.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
11.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
11.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
11.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
11.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
11.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
11.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
11.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
11.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
11.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
11.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
11.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
11.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
10.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
10.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
10.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
10.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
10.0
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
9.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
9.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
9.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
9.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
8.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
8.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
8.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
8.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
8.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
7.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
7.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
6.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
6.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
6.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
6.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
5.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
5.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
4.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
4.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
3.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
3.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1.5
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 18.3
Samples: 4
Max nTPM: 19.4
Min nTPM: 17.1
Sample A
Male
19.0
Sample B
Male
17.7
Sample C
Female
17.1
Sample D
Female
19.4
Hippocampal formation nTPM: 14.0
Samples: 4
Max nTPM: 16.8
Min nTPM: 11.8
Sample A
Male
11.8
Sample B
Male
16.8
Sample C
Female
15.0
Sample D
Female
12.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.