We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
223.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
187.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
123.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
114.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
111.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
108.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
93.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
88.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
87.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
87.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
86.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
80.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
79.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
74.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
74.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
72.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
71.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
69.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
60.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
60.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
58.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
56.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
55.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
55.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
54.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
53.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
53.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
52.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
52.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
50.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
49.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
49.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
48.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
45.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
39.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
38.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
38.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
36.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
35.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
34.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
30.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMS is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
99.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
93.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
91.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
90.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
80.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
80.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
76.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
75.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
70.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
69.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
64.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
62.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
52.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
51.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
48.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
46.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
45.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
44.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
43.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
41.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
37.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.0
363
Tumor
0.7
537
Tumor
0.6
883
Tumor
0.6
695
Tumor
0.6
685
Tumor
0.5
125
Tumor
0.5
567
Tumor
0.5
367
Tumor
0.5
445
Tumor
0.5
1021
Tumor
0.5
131
Tumor
0.5
283
Tumor
0.5
171
Tumor
0.4
727
Tumor
0.4
285
Tumor
0.4
147
Tumor
0.4
491
Tumor
0.4
815
Tumor
0.4
1043
Tumor
0.4
785
Tumor
0.4
647
Tumor
0.4
813
Tumor
0.4
861
Tumor
0.4
313
Tumor
0.3
983
Tumor
0.3
635
Tumor
0.3
525
Tumor
0.3
966
Normal
0.3
135
Tumor
0.3
1027
Tumor
0.2
738
Normal
0.2
921
Tumor
0.2
311
Tumor
0.2
375
Tumor
0.2
951
Tumor
0.2
538
Normal
0.2
952
Normal
0.2
535
Tumor
0.2
516
Normal
0.2
343
Tumor
0.2
744
Normal
0.2
923
Tumor
0.2
1031
Tumor
0.2
517
Tumor
0.1
777
Tumor
0.1
745
Tumor
0.1
851
Tumor
0.1
817
Tumor
0.1
963
Tumor
0.1
545
Tumor
0.1
1026
Normal
0.1
498
Normal
0.1
536
Normal
0.1
915
Tumor
0.1
1022
Normal
0.1
455
Tumor
0.1
957
Tumor
0.1
227
Tumor
0.1
925
Tumor
0.1
778
Normal
0.1
557
Tumor
0.1
492
Normal
0.1
741
Tumor
0.1
137
Tumor
0.1
411
Tumor
0.1
814
Normal
0.1
493
Tumor
0.1
342
Normal
0.1
943
Tumor
0.1
698
Normal
0.1
924
Normal
0.1
415
Tumor
0.1
746
Normal
0.1
728
Normal
0.1
724
Normal
0.0
878
Normal
0.0
481
Tumor
0.0
412
Normal
0.0
914
Normal
0.0
976
Normal
0.0
327
Tumor
0.0
483
Tumor
0.0
448
Normal
0.0
697
Tumor
0.0
956
Normal
0.0
862
Normal
0.0
518
Normal
0.0
471
Tumor
0.0
527
Tumor
N/A
128
Normal
0.0
953
Tumor
0.0
124
Normal
0.0
873
Tumor
0.0
546
Normal
0.0
553
Tumor
0.0
261
Tumor
0.0
344
Normal
0.0
865
Tumor
0.0
523
Tumor
0.0
737
Tumor
0.0
955
Tumor
0.0
944
Normal
0.0
881
Tumor
0.0
385
Tumor
0.0
816
Normal
0.0
716
Normal
0.0
742
Normal
0.0
965
Tumor
0.0
478
Normal
0.0
484
Normal
0.0
127
Tumor
0.0
463
Tumor
-0.1
1028
Normal
-0.1
938
Normal
-0.1
473
Tumor
-0.1
228
Normal
-0.1
661
Tumor
-0.1
472
Normal
-0.1
474
Normal
-0.1
964
Normal
-0.1
554
Normal
-0.1
351
Tumor
-0.1
447
Tumor
-0.1
617
Tumor
-0.1
487
Tumor
-0.1
355
Tumor
-0.1
452
Normal
-0.1
968
Normal
-0.1
186
Normal
-0.1
723
Tumor
-0.1
421
Tumor
-0.1
715
Tumor
-0.1
696
Normal
-0.1
916
Normal
-0.1
462
Normal
-0.1
231
Tumor
-0.1
488
Normal
-0.1
465
Tumor
-0.1
975
Tumor
-0.1
756
Normal
-0.1
111
Normal
-0.1
714
Normal
-0.1
112
Tumor
-0.1
431
Tumor
-0.1
958
Normal
-0.1
954
Normal
-0.1
461
Tumor
-0.1
284
Normal
-0.1
467
Tumor
-0.1
416
Normal
-0.1
436
Normal
-0.1
434
Normal
-0.1
387
Tumor
-0.1
913
Tumor
-0.1
686
Normal
-0.1
874
Normal
-0.1
211
Tumor
-0.1
494
Normal
-0.1
185
Tumor
-0.1
172
Normal
-0.1
917
Tumor
-0.1
864
Normal
-0.1
217
Tumor
-0.2
286
Normal
-0.2
212
Normal
-0.2
142
Normal
-0.2
1015
Tumor
-0.2
482
Normal
-0.2
524
Normal
-0.2
713
Tumor
-0.2
358
Normal
-0.2
858
Normal
-0.2
364
Normal
-0.2
755
Tumor
-0.2
721
Tumor
-0.2
918
Normal
-0.2
922
Normal
-0.2
824
Normal
-0.2
926
Normal
-0.2
298
Normal
-0.2
1042
Normal
-0.2
391
Tumor
-0.2
435
Tumor
-0.2
138
Normal
-0.2
1032
Normal
-0.2
863
Tumor
-0.2
1044
Normal
-0.2
722
Normal
-0.2
332
Normal
-0.2
451
Tumor
-0.2
356
Normal
-0.2
573
Tumor
-0.2
328
Normal
-0.2
866
Normal
-0.2
425
Tumor
-0.2
1016
Normal
-0.2
214
Normal
-0.2
982
Normal
-0.2
114
Normal
-0.2
426
Normal
-0.3
857
Tumor
-0.3
456
Normal
-0.3
882
Normal
-0.3
146
Normal
-0.3
528
Normal
-0.3
218
Normal
-0.3
852
Normal
-0.3
331
Tumor
-0.3
222
Normal
-0.3
188
Normal
-0.3
786
Normal
-0.3
1041
Tumor
-0.3
354
Normal
-0.3
162
Normal
-0.3
534
Normal
-0.3
196
Normal
-0.3
161
Tumor
-0.3
224
Normal
-0.3
526
Normal
-0.3
984
Normal
-0.3
145
Tumor
-0.3
867
Tumor
-0.3
357
Tumor
-0.3
497
Tumor
-0.3
868
Normal
-0.3
113
Tumor
-0.3
366
Normal
-0.3
297
Tumor
-0.3
468
Normal
-0.3
911
Tumor
-0.3
312
Normal
-0.3
132
Normal
-0.3
662
Normal
-0.4
1045
Tumor
-0.4
278
Normal
-0.4
477
Tumor
-0.4
1046
Normal
-0.4
271
Tumor
-0.4
515
Tumor
-0.4
671
Tumor
-0.4
257
Tumor
-0.4
352
Normal
-0.4
383
Tumor
-0.4
464
Normal
-0.4
422
Normal
-0.4
393
Tumor
-0.4
136
Normal
-0.4
362
Normal
-0.4
664
Normal
-0.4
432
Normal
-0.4
533
Tumor
-0.4
574
Normal
-0.4
443
Tumor
-0.4
648
Normal
-0.4
368
Normal
-0.4
466
Normal
-0.4
818
Normal
-0.4
981
Tumor
-0.4
428
Normal
-0.4
123
Tumor
-0.4
1014
Normal
-0.4
361
Tumor
-0.4
386
Normal
-0.4
126
Normal
-0.4
376
Normal
-0.4
823
Tumor
-0.4
192
Normal
-0.4
272
Normal
-0.5
666
Normal
-0.5
141
Tumor
-0.5
967
Tumor
-0.5
314
Normal
-0.5
978
Normal
-0.5
912
Normal
-0.5
262
Normal
-0.5
268
Normal
-0.5
427
Tumor
-0.5
148
Normal
-0.5
277
Tumor
-0.5
877
Tumor
-0.5
446
Normal
-0.5
195
Tumor
-0.5
213
Tumor
-0.5
1025
Tumor
-0.5
414
Normal
-0.5
568
Normal
-0.5
977
Tumor
-0.5
384
Normal
-0.5
388
Normal
-0.5
884
Normal
-0.5
187
Tumor
-0.5
396
Normal
-0.5
672
Normal
-0.5
513
Tumor
-0.5
395
Tumor
-0.5
341
Tumor
-0.6
223
Tumor
-0.6
444
Normal
-0.6
563
Tumor
-0.6
572
Normal
-0.6
258
Normal
-0.6
392
Normal
-0.6
564
Normal
-0.6
558
Normal
-0.6
267
Tumor
-0.6
571
Tumor
-0.6
424
Normal
-0.6
514
Normal
-0.6
394
Normal
-0.6
663
Tumor
-0.7
433
Tumor
-0.7
642
Normal
-0.7
636
Normal
-0.7
743
Tumor
-0.7
353
Tumor
-0.7
191
Tumor
-0.7
413
Tumor
-0.7
365
Tumor
-0.7
221
Tumor
-0.8
618
Normal
-0.8
627
Tumor
-0.8
232
Normal
-0.8
423
Tumor
-0.8
641
Tumor
-0.9
628
Normal
-0.9
937
Tumor
-1.1
665
Tumor
-1.1
616
Normal
-1.2
615
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
