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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAGT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
176.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
124.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
123.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
90.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
73.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
73.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
72.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
69.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
66.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
66.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
63.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
62.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
62.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
61.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
59.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
59.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
57.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
54.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
54.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
53.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
52.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
51.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
51.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
48.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
47.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
47.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
44.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
43.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
36.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
31.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
27.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
23.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAGT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
62.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
59.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
57.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
55.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
55.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
54.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
53.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
51.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
50.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
49.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
48.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
47.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
47.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
44.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
43.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
43.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
41.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
40.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
36.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
35.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
615
Tumor
0.8
351
Tumor
0.8
567
Tumor
0.8
857
Tumor
0.7
327
Tumor
0.5
777
Tumor
0.5
937
Tumor
0.5
557
Tumor
0.4
915
Tumor
0.4
481
Tumor
0.4
983
Tumor
0.4
435
Tumor
0.4
212
Normal
0.3
1013
Tumor
0.3
1045
Tumor
0.3
171
Tumor
0.3
1043
Tumor
0.3
451
Tumor
0.3
647
Tumor
0.3
411
Tumor
0.3
968
Normal
0.3
724
Normal
0.3
964
Normal
0.3
1021
Tumor
0.3
426
Normal
0.3
618
Normal
0.3
955
Tumor
0.3
286
Normal
0.3
514
Normal
0.3
1014
Normal
0.2
533
Tumor
0.2
917
Tumor
0.2
918
Normal
0.2
648
Normal
0.2
737
Tumor
0.2
728
Normal
0.2
978
Normal
0.2
462
Normal
0.2
186
Normal
0.2
113
Tumor
0.2
926
Normal
0.2
412
Normal
0.2
1046
Normal
0.2
452
Normal
0.2
742
Normal
0.2
636
Normal
0.2
172
Normal
0.2
527
Tumor
0.2
414
Normal
0.2
464
Normal
0.2
617
Tumor
0.2
534
Normal
0.2
713
Tumor
0.2
463
Tumor
0.2
923
Tumor
0.2
223
Tumor
0.2
357
Tumor
0.2
422
Normal
0.2
982
Normal
0.2
518
Normal
0.2
257
Tumor
0.2
526
Normal
0.2
938
Normal
0.2
328
Normal
0.2
951
Tumor
0.2
642
Normal
0.2
745
Tumor
0.2
448
Normal
0.2
916
Normal
0.2
628
Normal
0.2
958
Normal
0.2
922
Normal
0.2
466
Normal
0.2
1022
Normal
0.2
851
Tumor
0.2
353
Tumor
0.2
227
Tumor
0.2
528
Normal
0.2
524
Normal
0.2
147
Tumor
0.2
421
Tumor
0.2
436
Normal
0.2
564
Normal
0.2
723
Tumor
0.2
142
Normal
0.2
696
Normal
0.2
743
Tumor
0.1
912
Normal
0.1
162
Normal
0.1
515
Tumor
0.1
161
Tumor
0.1
525
Tumor
0.1
137
Tumor
0.1
285
Tumor
0.1
356
Normal
0.1
546
Normal
0.1
148
Normal
0.1
965
Tumor
0.1
277
Tumor
0.1
662
Normal
0.1
553
Tumor
0.1
1016
Normal
0.1
195
Tumor
0.1
862
Normal
0.1
111
Normal
0.1
387
Tumor
0.1
864
Normal
0.1
966
Normal
0.1
491
Tumor
0.1
1026
Normal
0.1
756
Normal
0.1
188
Normal
0.1
863
Tumor
0.1
1042
Normal
0.1
392
Normal
0.1
472
Normal
0.1
368
Normal
0.1
666
Normal
0.1
944
Normal
0.1
516
Normal
0.1
852
Normal
0.1
786
Normal
0.1
954
Normal
0.1
727
Tumor
0.1
125
Tumor
0.1
866
Normal
0.1
222
Normal
0.1
665
Tumor
0.1
196
Normal
0.1
428
Normal
0.1
721
Tumor
0.1
563
Tumor
0.1
465
Tumor
0.1
878
Normal
0.1
415
Tumor
0.1
573
Tumor
0.1
554
Normal
0.1
355
Tumor
0.1
367
Tumor
0.1
424
Normal
0.1
952
Normal
0.1
376
Normal
0.1
984
Normal
0.1
715
Tumor
0.1
817
Tumor
0.1
388
Normal
0.1
284
Normal
0.1
963
Tumor
0.1
823
Tumor
0.1
558
Normal
0.1
394
Normal
0.1
228
Normal
0.1
484
Normal
0.1
488
Normal
0.1
921
Tumor
0.0
924
Normal
0.0
865
Tumor
0.0
738
Normal
0.0
474
Normal
0.0
913
Tumor
0.0
741
Tumor
0.0
187
Tumor
0.0
616
Normal
0.0
314
Normal
0.0
1025
Tumor
0.0
698
Normal
0.0
218
Normal
0.0
523
Tumor
0.0
824
Normal
0.0
423
Tumor
0.0
976
Normal
0.0
664
Normal
0.0
1044
Normal
0.0
494
Normal
0.0
877
Tumor
0.0
427
Tumor
0.0
432
Normal
0.0
456
Normal
0.0
312
Normal
0.0
882
Normal
0.0
258
Normal
0.0
366
Normal
0.0
1032
Normal
0.0
127
Tumor
0.0
363
Tumor
0.0
1031
Tumor
0.0
477
Tumor
0.0
224
Normal
0.0
686
Normal
0.0
386
Normal
0.0
396
Normal
0.0
416
Normal
0.0
884
Normal
0.0
232
Normal
0.0
981
Tumor
0.0
468
Normal
0.0
778
Normal
0.0
914
Normal
0.0
271
Tumor
0.0
433
Tumor
0.0
874
Normal
0.0
231
Tumor
0.0
114
Normal
0.0
482
Normal
0.0
362
Normal
0.0
858
Normal
0.0
714
Normal
0.0
568
Normal
0.0
873
Tumor
0.0
861
Tumor
0.0
697
Tumor
0.0
818
Normal
0.0
185
Tumor
0.0
214
Normal
0.0
298
Normal
0.0
517
Tumor
0.0
868
Normal
0.0
358
Normal
0.0
278
Normal
0.0
341
Tumor
0.0
365
Tumor
0.0
272
Normal
0.0
883
Tumor
0.0
816
Normal
0.0
217
Tumor
-0.1
953
Tumor
-0.1
813
Tumor
-0.1
213
Tumor
-0.1
746
Normal
-0.1
722
Normal
-0.1
395
Tumor
-0.1
641
Tumor
-0.1
268
Normal
-0.1
461
Tumor
-0.1
364
Normal
-0.1
126
Normal
-0.1
956
Normal
-0.1
131
Tumor
-0.1
443
Tumor
-0.1
572
Normal
-0.1
128
Normal
-0.1
672
Normal
-0.1
446
Normal
-0.1
492
Normal
-0.1
384
Normal
-0.1
755
Tumor
-0.1
383
Tumor
-0.1
391
Tumor
-0.1
1028
Normal
-0.1
536
Normal
-0.1
957
Tumor
-0.1
513
Tumor
-0.1
112
Tumor
-0.1
434
Normal
-0.1
332
Normal
-0.1
716
Normal
-0.1
487
Tumor
-0.1
192
Normal
-0.1
1015
Tumor
-0.1
352
Normal
-0.1
221
Tumor
-0.1
975
Tumor
-0.1
262
Normal
-0.1
943
Tumor
-0.1
814
Normal
-0.1
574
Normal
-0.1
311
Tumor
-0.1
331
Tumor
-0.1
261
Tumor
-0.1
361
Tumor
-0.1
535
Tumor
-0.1
145
Tumor
-0.1
375
Tumor
-0.1
867
Tumor
-0.1
467
Tumor
-0.1
815
Tumor
-0.1
191
Tumor
-0.1
671
Tumor
-0.1
663
Tumor
-0.1
135
Tumor
-0.2
124
Normal
-0.2
267
Tumor
-0.2
123
Tumor
-0.2
744
Normal
-0.2
635
Tumor
-0.2
538
Normal
-0.2
342
Normal
-0.2
393
Tumor
-0.2
447
Tumor
-0.2
444
Normal
-0.2
313
Tumor
-0.2
343
Tumor
-0.2
478
Normal
-0.2
354
Normal
-0.2
627
Tumor
-0.2
1041
Tumor
-0.2
925
Tumor
-0.2
498
Normal
-0.2
211
Tumor
-0.2
431
Tumor
-0.2
136
Normal
-0.2
138
Normal
-0.2
385
Tumor
-0.2
911
Tumor
-0.3
146
Normal
-0.3
132
Normal
-0.3
413
Tumor
-0.3
455
Tumor
-0.3
283
Tumor
-0.3
471
Tumor
-0.3
785
Tumor
-0.3
881
Tumor
-0.3
695
Tumor
-0.3
497
Tumor
-0.3
537
Tumor
-0.3
661
Tumor
-0.3
344
Normal
-0.3
571
Tumor
-0.4
483
Tumor
-0.4
297
Tumor
-0.4
445
Tumor
-0.4
141
Tumor
-0.4
977
Tumor
-0.4
473
Tumor
-0.4
967
Tumor
-0.4
1027
Tumor
-0.4
425
Tumor
-0.4
545
Tumor
-0.5
685
Tumor
-0.5
493
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
