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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
334.2
nTPM
HPA Brain:
938.5
nTPM
GTEx:
334.2
nTPM
FANTOM5:
82.6
Scaled Tags Per Million
Pig:
702.9
nTPM
Mouse:
8.9
nTPM
Allen mouse:
14.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
938.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 601.2
2586
Male, age 75, left hemisphere
1102.7
2666
Male, age 74, left hemisphere
803.0
2828
Female, age 72, unknown
681.2
1827
Male, age 72, unknown
608.5
1870
Female, age 42, unknown
541.2
2219
Male, age 76, both hemispheres
532.3
1833
Male, age 53, unknown
514.0
1830
Male, age 51, unknown
452.8
2411
Female, age 72, unknown
418.2
2019
Male, age 18, unknown
358.4
Dorsal raphe nucleus nTPM: 612.0
2047
Male, age 72, unknown
705.5
2298
Female, age 72, unknown
700.7
1828
Male, age 53, unknown
565.6
2750
Male, age 76, both hemispheres
561.6
2016
Female, age 72, unknown
526.6
Inferior colliculus nTPM: 647.8
2849
Male, age 72, unknown
751.5
1848
Female, age 42, unknown
640.3
2097
Female, age 72, unknown
638.1
1890
Male, age 53, unknown
561.5
Median raphe nucleus nTPM: 938.5
2220
Male, age 76, midline
938.5
Periaquaductal grey, anterior nTPM: 730.8
1795
Male, age 51, unknown
775.1
1947
Male, age 18, unknown
772.1
2502
Female, age 75, unknown
645.2
Periaquaductal grey, dorsal nTPM: 615.8
1840
Male, age 53, unknown
783.0
2850
Male, age 76, both hemispheres
665.7
1831
Male, age 72, unknown
541.9
2464
Female, age 72, unknown
472.4
Periaquaductal grey, lateral nTPM: 570.7
2140
Male, age 76, both hemispheres
652.8
2272
Male, age 74, both hemispheres
586.3
2053
Male, age 18, unknown
473.0
Pretectal area nTPM: 538.9
2224
Female, age 72, unknown
773.0
2825
Male, age 18, unknown
708.3
2007
Male, age 72, unknown
607.8
1816
Male, age 51, unknown
577.2
2667
Female, age 75, unknown
562.3
1817
Female, age 42, unknown
557.0
1944
Female, age 72, unknown
543.1
2273
Male, age 74, both hemispheres
456.7
2316
Male, age 76, right hemisphere
431.4
1815
Male, age 53, unknown
430.1
2407
Male, age 75, both hemispheres
280.8
Red nucleus nTPM: 426.3
2584
Male, age 75, left hemisphere
734.4
2588
Male, age 74, left hemisphere
491.0
2785
Male, age 18, unknown
474.8
2227
Male, age 72, unknown
472.5
2769
Male, age 72, unknown
466.3
2503
Female, age 72, unknown
436.3
1954
Female, age 42, unknown
396.7
2725
Female, age 75, unknown
365.6
1821
Female, age 72, unknown
356.8
1904
Male, age 53, unknown
328.2
2823
Male, age 76, right hemisphere
312.5
1865
Male, age 51, unknown
280.7
Substantia nigra nTPM: 507.2
1916
Female, age 42, unknown
678.2
2665
Male, age 74, both hemispheres
627.6
2583
Male, age 75, right hemisphere
617.3
1851
Male, age 51, unknown
530.5
1941
Male, age 53, unknown
526.4
2699
Male, age 18, unknown
519.1
1889
Female, age 72, unknown
513.8
2590
Female, age 75, unknown
401.5
2241
Male, age 72, unknown
398.1
2409
Female, age 72, unknown
259.3
Superior colliculus nTPM: 492.0
2668
Female, age 75, unknown
686.0
1796
Male, age 53, unknown
668.7
1839
Male, age 51, unknown
589.3
2087
Female, age 72, unknown
529.3
2261
Male, age 18, unknown
516.5
2664
Male, age 75, both hemispheres
489.3
2587
Male, age 74, left hemisphere
421.7
1895
Male, age 76, right hemisphere
408.0
1913
Female, age 42, unknown
310.4
1995
Male, age 72, unknown
300.2
Ventral tegmental area nTPM: 618.1
2218
Male, age 76, both hemispheres
728.4
1942
Male, age 51, unknown
709.5
1915
Female, age 42, unknown
691.0
2021
Male, age 53, unknown
645.4
2223
Female, age 72, unknown
543.9
2410
Female, age 72, unknown
390.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
334.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 334.2
Samples: 139
Max nTPM: 809.8
Min nTPM: 42.0
Std nTPM: 168.7
Median nTPM: 325.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
809.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
782.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
772.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
692.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
673.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
660.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
636.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
631.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
626.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
616.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
614.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
607.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
588.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
571.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
569.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
559.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
553.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
543.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
543.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
530.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
530.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
526.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
524.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
513.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
511.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
511.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
501.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
487.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
480.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
478.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
474.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
455.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
450.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
443.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
423.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
422.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
418.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
416.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
416.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
413.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
411.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
410.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
408.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
405.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
401.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
401.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
386.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
382.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
369.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
368.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
368.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
364.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
362.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
356.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
356.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
350.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
350.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
347.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
346.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
344.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
343.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
332.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
332.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
331.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
330.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
329.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
327.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
326.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
326.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
325.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
319.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
318.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
306.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
304.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
302.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
294.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
294.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
292.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
292.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
279.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
278.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
278.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
276.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
268.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
268.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
266.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
253.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
253.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
252.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
251.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
248.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
245.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
240.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
239.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
239.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
229.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
228.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
227.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
226.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
223.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
221.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
217.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
215.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
214.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
201.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
198.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
195.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
194.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
193.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
183.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
175.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
171.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
171.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
171.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
171.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
167.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
166.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
164.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
163.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
153.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
140.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
135.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
135.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
134.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
130.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
123.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
120.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
114.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
110.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
108.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
99.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
97.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
94.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
89.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
88.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
84.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
56.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
53.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
42.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 8.9
Samples: 4
Max nTPM: 15.1
Min nTPM: 5.7
Sample A
Male
15.1
Sample B
Male
7.8
Sample C
Female
5.7
Sample D
Female
6.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.