We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
803.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 347.4
2301
Female, age 85, both hemispheres
457.9
1984
Male, age 76, both hemispheres
379.3
2188
Female, age 91, both hemispheres
280.2
2090
Male, age 80, both hemispheres
272.4
Dorsal cochlear nucleus nTPM: 460.1
2187
Female, age 91, both hemispheres
569.5
2802
Male, age 74, right hemisphere
537.8
2370
Male, age 61, both hemispheres
479.3
2058
Male, age 76, both hemispheres
435.6
2378
Male, age 80, both hemispheres
278.6
Dorsal tegmental nucleus nTPM: 571.3
2083
Male, age 80, both hemispheres
627.7
1936
Male, age 76, left hemisphere
581.6
2358
Male, age 61, both hemispheres
561.2
2326
Male, age 74, both hemispheres
514.9
Dorsolateral tegmental area nTPM: 513.5
2141
Male, age 76, both hemispheres
746.4
2654
Male, age 80, both hemispheres
584.6
2751
Female, age 85, both hemispheres
435.4
2360
Male, age 74, both hemispheres
413.0
2337
Male, age 61, both hemispheres
387.9
Kolliker-Fuse nucleus nTPM: 456.1
2163
Male, age 80, both hemispheres
629.1
2315
Male, age 76, right hemisphere
381.0
2793
Female, age 91, left hemisphere
358.2
Lateral lemniscal nuclei nTPM: 490.6
2169
Male, age 76, both hemispheres
628.4
2746
Female, age 85, left hemisphere
510.0
2453
Male, age 74, right hemisphere
490.0
2036
Male, age 80, both hemispheres
463.4
2320
Female, age 91, left hemisphere
361.2
Lateral parabrachial nucleus nTPM: 446.5
2139
Female, age 85, right hemisphere
605.0
2790
Male, age 61, both hemispheres
565.1
2013
Male, age 80, both hemispheres
375.1
2792
Male, age 76, both hemispheres
240.9
Lateral vestibular nucleus nTPM: 650.8
2184
Male, age 76, both hemispheres
658.3
2311
Male, age 80, both hemispheres
643.3
Locus coeruleus nTPM: 803.0
2123
Female, age 91, both hemispheres
958.1
2720
Male, age 74, both hemispheres
919.8
2162
Male, age 80, both hemispheres
879.3
1980
Male, age 76, both hemispheres
876.4
2317
Female, age 72, unknown
825.2
2014
Male, age 55, unknown
735.5
2788
Male, age 74, unknown
427.0
Medial parabrachial nucleus nTPM: 598.5
2156
Male, age 61, both hemispheres
758.7
2170
Female, age 91, both hemispheres
679.5
2786
Male, age 76, both hemispheres
597.5
2854
Male, age 80, both hemispheres
523.0
2463
Female, age 85, right hemisphere
433.8
Medial periolivary nuclei nTPM: 459.1
2171
Female, age 85, both hemispheres
763.6
2063
Male, age 76, both hemispheres
642.2
2458
Female, age 91, both hemispheres
311.5
2791
Male, age 74, right hemisphere
291.7
2081
Male, age 80, both hemispheres
286.3
Motor facial nucleus nTPM: 517.4
2062
Male, age 76, both hemispheres
751.8
2126
Male, age 61, both hemispheres
558.0
2327
Male, age 80, both hemispheres
534.8
2697
Female, age 85, both hemispheres
483.1
2795
Female, age 91, both hemispheres
408.3
2365
Male, age 74, right hemisphere
368.5
Motor trigeminal nucleus nTPM: 543.8
2335
Male, age 61, both hemispheres
814.8
2309
Male, age 76, both hemispheres
586.6
2079
Male, age 80, both hemispheres
478.3
2560
Male, age 74, both hemispheres
420.0
2321
Female, age 91, both hemispheres
419.5
Nuclei of the trapezoid body nTPM: 566.4
2735
Female, age 85, both hemispheres
719.7
1983
Male, age 76, both hemispheres
713.9
2159
Male, age 61, both hemispheres
625.9
2166
Male, age 80, both hemispheres
428.6
2368
Female, age 91, both hemispheres
344.0
Nucleus raphe magnus nTPM: 585.6
2172
Female, age 85, both hemispheres
800.9
2160
Male, age 61, both hemispheres
786.6
2455
Male, age 74, both hemispheres
566.6
2051
Male, age 76, both hemispheres
534.2
2328
Male, age 80, both hemispheres
518.8
2459
Female, age 91, both hemispheres
306.7
Paramedian reticular nucleus nTPM: 544.2
2313
Male, age 61, both hemispheres
806.2
2057
Male, age 80, both hemispheres
578.0
2050
Female, age 85, both hemispheres
506.8
2052
Male, age 76, both hemispheres
285.8
Pedunculopontine tegmental nucleus nTPM: 563.3
2334
Male, age 80, both hemispheres
684.3
1921
Female, age 85, both hemispheres
608.7
2338
Male, age 61, both hemispheres
397.0
Pontine nuclei nTPM: 497.8
2787
Female, age 85, both hemispheres
891.7
1968
Male, age 76, left hemisphere
656.8
2727
Male, age 61, right hemisphere
526.8
1863
Male, age 55, unknown
515.8
2109
Female, age 72, unknown
455.6
2115
Male, age 80, left hemisphere
367.4
2454
Male, age 74, left hemisphere
289.3
2319
Female, age 91, both hemispheres
279.2
Pontine raphe nucleus nTPM: 603.0
2853
Male, age 76, midline
738.4
2122
Female, age 85, midline
467.5
Posteroventral cochlear nucleus nTPM: 403.5
2752
Female, age 85, both hemispheres
652.7
2070
Male, age 76, both hemispheres
587.0
2371
Male, age 61, both hemispheres
470.2
2341
Male, age 80, both hemispheres
186.6
2135
Female, age 91, both hemispheres
121.0
Principal sensory trigeminal nucleus nTPM: 528.2
2324
Male, age 76, both hemispheres
688.9
2158
Male, age 61, both hemispheres
685.6
2008
Male, age 80, left hemisphere
461.1
2367
Female, age 91, left hemisphere
277.1
Reticular pontine nucleus, caudal nTPM: 473.7
2332
Male, age 80, right hemisphere
612.0
2092
Male, age 76, both hemispheres
531.0
2559
Male, age 74, both hemispheres
416.8
2457
Female, age 91, both hemispheres
334.9
Reticular pontine nucleus, oral nTPM: 412.5
2167
Male, age 76, both hemispheres
590.2
1939
Male, age 80, both hemispheres
467.1
2012
Female, age 85, both hemispheres
459.6
2366
Female, age 91, both hemispheres
275.5
2361
Male, age 74, both hemispheres
270.1
Reticulotegmental nucleus nTPM: 611.9
2325
Male, age 76, both hemispheres
720.1
2322
Female, age 91, both hemispheres
592.4
2452
Male, age 74, both hemispheres
581.9
2333
Male, age 80, both hemispheres
553.1
Spinal trigeminal nucleus, oral nTPM: 609.1
1978
Male, age 76, both hemispheres
689.6
2164
Male, age 80, both hemispheres
605.9
2737
Female, age 85, both hemispheres
531.9
Subcoeruleus area nTPM: 599.4
2323
Female, age 91, left hemisphere
905.2
2451
Male, age 74, both hemispheres
701.2
1958
Male, age 80, both hemispheres
524.5
2089
Male, age 76, left hemisphere
522.3
2369
Female, age 85, left hemisphere
343.7
Superior olive nTPM: 415.1
2329
Male, age 80, right hemisphere
485.1
1875
Female, age 85, both hemispheres
467.3
2020
Male, age 76, both hemispheres
417.7
2561
Female, age 91, both hemispheres
401.8
2364
Male, age 74, right hemisphere
303.4
Ventral periolivary nuclei nTPM: 440.9
2165
Male, age 80, both hemispheres
616.7
2130
Female, age 85, both hemispheres
446.6
2023
Male, age 76, both hemispheres
353.2
2794
Female, age 91, left hemisphere
346.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 459.1
2359
Male, age 61, both hemispheres
570.4
2449
Male, age 74, both hemispheres
487.0
2840
Female, age 85, both hemispheres
486.2
1959
Male, age 76, both hemispheres
470.6
2161
Male, age 80, both hemispheres
442.2
2456
Female, age 91, both hemispheres
298.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
823.9
Pig sample
Sample description
nTPM
Pons nTPM: 823.9
Samples: 4
Max nTPM: 891.7
Min nTPM: 757.4
Sample A
Female
891.7
Sample B
Female
762.4
Sample C
Male
757.4
Sample D
Male
884.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.