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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PQBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
130.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
118.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
116.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
109.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
106.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
105.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
103.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
100.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
98.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
93.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
91.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
91.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
90.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
88.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
88.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
87.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
83.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
82.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
81.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
78.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
78.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
78.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
77.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
77.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
77.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
77.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
76.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
75.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
75.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
75.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
74.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
73.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
72.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
72.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
71.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
71.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
70.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
70.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
69.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
69.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
69.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
69.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
69.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
67.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
67.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
67.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
67.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
67.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
66.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
65.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
65.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
63.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
62.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
62.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
62.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
60.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
60.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
60.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
59.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
59.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
59.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
58.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
58.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
57.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
57.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
56.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
56.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
56.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
56.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
55.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
54.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
54.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
54.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
54.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
53.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
53.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
52.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
51.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
51.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
49.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
49.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
49.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
49.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
49.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
48.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
47.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
47.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
47.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
46.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
46.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
45.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
45.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
45.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
44.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
44.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
43.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
43.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
43.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
42.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
41.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
41.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
40.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
40.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
40.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
38.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
37.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
35.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
34.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
29.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PQBP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.3
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
186.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
165.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
137.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
135.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
129.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
120.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
118.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
114.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
102.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
92.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
89.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
88.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
86.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
86.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
85.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
84.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
79.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
78.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
78.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
76.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
76.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
76.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
76.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
75.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
74.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
74.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
74.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
74.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
74.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
73.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
72.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
72.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
71.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
70.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
70.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
70.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
69.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
69.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
68.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
67.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
66.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
64.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
63.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
62.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
61.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
61.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
61.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
60.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
59.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
58.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
58.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
57.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
57.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
54.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
54.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
54.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
53.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
53.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
52.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
52.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
52.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
51.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
49.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
49.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
48.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
48.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
47.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
46.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
46.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
46.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
45.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
44.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
42.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
42.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
41.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
40.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.1
131
Tumor
1.0
965
Tumor
1.0
647
Tumor
1.0
695
Tumor
0.9
1013
Tumor
0.9
411
Tumor
0.9
951
Tumor
0.8
351
Tumor
0.8
1021
Tumor
0.8
661
Tumor
0.7
497
Tumor
0.7
967
Tumor
0.7
685
Tumor
0.7
983
Tumor
0.7
957
Tumor
0.7
777
Tumor
0.7
355
Tumor
0.7
473
Tumor
0.7
523
Tumor
0.7
663
Tumor
0.7
211
Tumor
0.6
785
Tumor
0.6
285
Tumor
0.6
431
Tumor
0.6
814
Normal
0.6
923
Tumor
0.6
937
Tumor
0.6
413
Tumor
0.6
493
Tumor
0.6
743
Tumor
0.6
1031
Tumor
0.6
921
Tumor
0.5
313
Tumor
0.5
425
Tumor
0.5
123
Tumor
0.5
477
Tumor
0.5
527
Tumor
0.5
487
Tumor
0.5
331
Tumor
0.5
943
Tumor
0.5
727
Tumor
0.5
881
Tumor
0.5
737
Tumor
0.5
513
Tumor
0.5
357
Tumor
0.5
975
Tumor
0.5
665
Tumor
0.5
815
Tumor
0.4
813
Tumor
0.4
545
Tumor
0.4
883
Tumor
0.4
537
Tumor
0.4
977
Tumor
0.4
341
Tumor
0.4
953
Tumor
0.4
385
Tumor
0.4
443
Tumor
0.4
515
Tumor
0.4
861
Tumor
0.4
741
Tumor
0.4
873
Tumor
0.4
171
Tumor
0.4
471
Tumor
0.3
463
Tumor
0.3
161
Tumor
0.3
817
Tumor
0.3
1041
Tumor
0.3
217
Tumor
0.3
724
Normal
0.3
755
Tumor
0.3
391
Tumor
0.3
447
Tumor
0.3
1025
Tumor
0.3
715
Tumor
0.3
877
Tumor
0.3
925
Tumor
0.3
1045
Tumor
0.3
867
Tumor
0.3
112
Tumor
0.3
981
Tumor
0.3
553
Tumor
0.3
465
Tumor
0.3
277
Tumor
0.3
267
Tumor
0.3
671
Tumor
0.2
697
Tumor
0.2
857
Tumor
0.2
915
Tumor
0.2
311
Tumor
0.2
1015
Tumor
0.2
525
Tumor
0.2
141
Tumor
0.2
963
Tumor
0.2
533
Tumor
0.2
467
Tumor
0.2
823
Tumor
0.2
517
Tumor
0.2
938
Normal
0.2
221
Tumor
0.2
455
Tumor
0.2
911
Tumor
0.2
571
Tumor
0.2
481
Tumor
0.2
383
Tumor
0.2
297
Tumor
0.1
698
Normal
0.1
261
Tumor
0.1
1016
Normal
0.1
135
Tumor
0.1
535
Tumor
0.1
1032
Normal
0.1
227
Tumor
0.1
536
Normal
0.1
878
Normal
0.1
924
Normal
0.1
746
Normal
0.1
756
Normal
0.1
912
Normal
0.1
984
Normal
0.1
866
Normal
0.1
557
Tumor
0.1
955
Tumor
0.1
954
Normal
0.1
1028
Normal
0.1
1022
Normal
0.1
387
Tumor
0.1
1014
Normal
0.1
483
Tumor
0.1
696
Normal
0.1
913
Tumor
0.1
863
Tumor
0.1
884
Normal
0.1
498
Normal
0.1
982
Normal
0.1
944
Normal
0.1
917
Tumor
0.1
445
Tumor
0.1
484
Normal
0.1
563
Tumor
0.1
283
Tumor
0.1
367
Tumor
0.1
213
Tumor
0.1
365
Tumor
0.1
786
Normal
0.1
415
Tumor
0.1
858
Normal
0.0
435
Tumor
0.0
1026
Normal
0.0
966
Normal
0.0
375
Tumor
0.0
433
Tumor
0.0
721
Tumor
0.0
615
Tumor
0.0
635
Tumor
0.0
472
Normal
0.0
882
Normal
0.0
231
Tumor
0.0
492
Normal
0.0
137
Tumor
0.0
714
Normal
0.0
573
Tumor
0.0
461
Tumor
0.0
824
Normal
0.0
964
Normal
0.0
922
Normal
0.0
1042
Normal
0.0
1027
Tumor
0.0
1043
Tumor
0.0
816
Normal
0.0
393
Tumor
0.0
524
Normal
0.0
968
Normal
0.0
363
Tumor
0.0
195
Tumor
0.0
952
Normal
0.0
1044
Normal
0.0
482
Normal
0.0
361
Tumor
0.0
271
Tumor
0.0
916
Normal
0.0
686
Normal
0.0
534
Normal
0.0
716
Normal
0.0
488
Normal
0.0
567
Tumor
0.0
744
Normal
0.0
516
Normal
0.0
918
Normal
0.0
451
Tumor
0.0
722
Normal
-0.1
745
Tumor
-0.1
448
Normal
-0.1
546
Normal
-0.1
364
Normal
-0.1
518
Normal
-0.1
868
Normal
-0.1
852
Normal
-0.1
1046
Normal
-0.1
862
Normal
-0.1
113
Tumor
-0.1
864
Normal
-0.1
554
Normal
-0.1
723
Tumor
-0.1
778
Normal
-0.1
958
Normal
-0.1
142
Normal
-0.1
412
Normal
-0.1
427
Tumor
-0.1
223
Tumor
-0.1
353
Tumor
-0.1
851
Tumor
-0.1
395
Tumor
-0.1
926
Normal
-0.1
662
Normal
-0.1
127
Tumor
-0.1
478
Normal
-0.1
327
Tumor
-0.1
526
Normal
-0.1
528
Normal
-0.1
423
Tumor
-0.1
474
Normal
-0.1
742
Normal
-0.1
914
Normal
-0.1
641
Tumor
-0.1
728
Normal
-0.1
462
Normal
-0.1
384
Normal
-0.1
874
Normal
-0.1
284
Normal
-0.1
978
Normal
-0.1
491
Tumor
-0.1
514
Normal
-0.1
617
Tumor
-0.2
145
Tumor
-0.2
494
Normal
-0.2
818
Normal
-0.2
538
Normal
-0.2
956
Normal
-0.2
416
Normal
-0.2
356
Normal
-0.2
648
Normal
-0.2
738
Normal
-0.2
672
Normal
-0.2
228
Normal
-0.2
328
Normal
-0.2
426
Normal
-0.2
136
Normal
-0.2
664
Normal
-0.2
286
Normal
-0.2
558
Normal
-0.2
436
Normal
-0.2
666
Normal
-0.2
187
Tumor
-0.2
191
Tumor
-0.3
572
Normal
-0.3
147
Tumor
-0.3
421
Tumor
-0.3
976
Normal
-0.3
222
Normal
-0.3
232
Normal
-0.3
218
Normal
-0.3
224
Normal
-0.3
564
Normal
-0.3
258
Normal
-0.3
376
Normal
-0.3
125
Tumor
-0.3
262
Normal
-0.3
444
Normal
-0.3
114
Normal
-0.3
428
Normal
-0.3
298
Normal
-0.3
128
Normal
-0.3
396
Normal
-0.3
192
Normal
-0.3
268
Normal
-0.3
196
Normal
-0.3
344
Normal
-0.3
212
Normal
-0.3
124
Normal
-0.3
111
Normal
-0.3
352
Normal
-0.4
362
Normal
-0.4
424
Normal
-0.4
132
Normal
-0.4
368
Normal
-0.4
257
Tumor
-0.4
568
Normal
-0.4
434
Normal
-0.4
366
Normal
-0.4
464
Normal
-0.4
468
Normal
-0.4
342
Normal
-0.4
343
Tumor
-0.4
185
Tumor
-0.4
414
Normal
-0.4
146
Normal
-0.4
432
Normal
-0.4
713
Tumor
-0.4
618
Normal
-0.4
627
Tumor
-0.4
628
Normal
-0.4
456
Normal
-0.4
574
Normal
-0.4
126
Normal
-0.4
138
Normal
-0.5
354
Normal
-0.5
214
Normal
-0.5
272
Normal
-0.5
446
Normal
-0.5
466
Normal
-0.5
148
Normal
-0.5
422
Normal
-0.5
452
Normal
-0.5
386
Normal
-0.5
162
Normal
-0.5
616
Normal
-0.5
636
Normal
-0.5
188
Normal
-0.5
394
Normal
-0.5
642
Normal
-0.5
388
Normal
-0.5
392
Normal
-0.5
358
Normal
-0.6
186
Normal
-0.6
172
Normal
-0.6
312
Normal
-0.8
332
Normal
-0.8
278
Normal
-0.8
314
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
