MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA Brain:30.9 nTPM
GTEx:21.8 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:45.1 nTPM
Mouse:28.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2666 Male, age 74, left hemisphere 33.7
1827 Male, age 72, unknown 32.7
2586 Male, age 75, left hemisphere 32.7
1870 Female, age 42, unknown 28.4
2411 Female, age 72, unknown 28.4
2019 Male, age 18, unknown 28.3
1830 Male, age 51, unknown 26.0
2219 Male, age 76, both hemispheres 25.0
2828 Female, age 72, unknown 24.8
1833 Male, age 53, unknown 23.6
Dorsal raphe nucleus
nTPM: 25.6
1828 Male, age 53, unknown 28.9
2016 Female, age 72, unknown 28.2
2298 Female, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 23.7
2047 Male, age 72, unknown 22.9
Inferior colliculus
nTPM: 29.6
2849 Male, age 72, unknown 30.3
1890 Male, age 53, unknown 29.7
2097 Female, age 72, unknown 29.6
1848 Female, age 42, unknown 28.9
Median raphe nucleus
nTPM: 22.8
2220 Male, age 76, midline 22.8
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 32.2
2502 Female, age 75, unknown 31.2
1795 Male, age 51, unknown 26.8
Periaquaductal grey, dorsal
nTPM: 28.2
1840 Male, age 53, unknown 29.3
1831 Male, age 72, unknown 28.8
2850 Male, age 76, both hemispheres 28.4
2464 Female, age 72, unknown 26.5
Periaquaductal grey, lateral
nTPM: 25.7
2053 Male, age 18, unknown 29.3
2140 Male, age 76, both hemispheres 25.7
2272 Male, age 74, both hemispheres 22.0
Pretectal area
nTPM: 30.9
1816 Male, age 51, unknown 39.6
2007 Male, age 72, unknown 37.5
1944 Female, age 72, unknown 36.3
1815 Male, age 53, unknown 35.9
1817 Female, age 42, unknown 35.5
2224 Female, age 72, unknown 27.9
2825 Male, age 18, unknown 26.9
2407 Male, age 75, both hemispheres 26.3
2667 Female, age 75, unknown 26.2
2316 Male, age 76, right hemisphere 24.2
2273 Male, age 74, both hemispheres 23.3
Red nucleus
nTPM: 30.1
1821 Female, age 72, unknown 38.4
2503 Female, age 72, unknown 35.0
2725 Female, age 75, unknown 32.5
1865 Male, age 51, unknown 29.7
2584 Male, age 75, left hemisphere 29.7
2588 Male, age 74, left hemisphere 29.2
1904 Male, age 53, unknown 28.8
2823 Male, age 76, right hemisphere 28.5
1954 Female, age 42, unknown 27.7
2769 Male, age 72, unknown 27.5
2785 Male, age 18, unknown 26.9
2227 Male, age 72, unknown 26.6
Substantia nigra
nTPM: 30.0
1889 Female, age 72, unknown 35.3
2665 Male, age 74, both hemispheres 34.7
1916 Female, age 42, unknown 29.7
2699 Male, age 18, unknown 29.3
1851 Male, age 51, unknown 29.2
1941 Male, age 53, unknown 29.2
2409 Female, age 72, unknown 28.8
2583 Male, age 75, right hemisphere 28.4
2590 Female, age 75, unknown 28.0
2241 Male, age 72, unknown 27.1
Superior colliculus
nTPM: 28.5
2668 Female, age 75, unknown 31.0
2261 Male, age 18, unknown 29.2
2664 Male, age 75, both hemispheres 28.9
2587 Male, age 74, left hemisphere 28.8
1796 Male, age 53, unknown 28.7
2087 Female, age 72, unknown 28.6
1995 Male, age 72, unknown 28.3
1913 Female, age 42, unknown 27.9
1895 Male, age 76, right hemisphere 27.1
1839 Male, age 51, unknown 26.1
Ventral tegmental area
nTPM: 27.1
2410 Female, age 72, unknown 29.8
1942 Male, age 51, unknown 28.2
2218 Male, age 76, both hemispheres 27.1
2223 Female, age 72, unknown 26.9
1915 Female, age 42, unknown 26.2
2021 Male, age 53, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.8
Samples: 139

Max nTPM: 36.3
Min nTPM: 14.2
Std nTPM: 4.2
Median nTPM: 20.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 36.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 32.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 31.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 31.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 31.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 31.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 30.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 29.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 28.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.1
FF:10158-103A5 76 years, female 45.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.1
Samples: 4

Max nTPM: 43.6
Min nTPM: 38.7
Sample A Female 38.7
Sample B Female 39.5
Sample C Male 42.4
Sample D Male 43.6
Midbrain
nTPM: 45.1
Samples: 4

Max nTPM: 50.2
Min nTPM: 41.4
Sample A Female 44.9
Sample B Female 43.9
Sample C Male 50.2
Sample D Male 41.4
Periaqueductal gray
nTPM: 40.1
Samples: 3

Max nTPM: 42.7
Min nTPM: 38.1
Sample B Female 42.7
Sample C Male 39.4
Sample D Male 38.1
Superior colliculi
nTPM: 41.1
Samples: 4

Max nTPM: 44.4
Min nTPM: 38.4
Sample A Female 38.9
Sample B Female 38.4
Sample C Male 44.4
Sample D Male 42.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 30.1
Min nTPM: 26.5
Sample A Male 26.5
Sample B Male 29.4
Sample C Female 30.1
Sample D Female 28.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73606703 Antisense, RP_051130_01_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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