HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:19.8 nTPM
HPA Brain:30.5 nTPM
GTEx:19.8 nTPM
FANTOM5:58.1 Scaled Tags Per Million
Pig:43.7 nTPM
Mouse:38.4 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050118Antibody HPA056084Antibody CAB012444
Glial cells LowMediumLow
Neuronal cells HighHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 30.5
Sample id Sample description nTPM
Hippocampus
nTPM: 25.5
1898 Male, age 80, left hemisphere 29.3
2529 Female, age 94, left hemisphere 29.1
2621 Female, age 67, right hemisphere 24.8
1855 Male, age 76, left hemisphere 24.2
2148 Female, age 91, left hemisphere 23.4
1911 Female, age 85, right hemisphere 22.2
Dentate gyrus
nTPM: 24.1
2530 Female, age 94, left hemisphere 26.7
1927 Female, age 91, both hemispheres 25.7
2246 Female, age 85, both hemispheres 24.6
2010 Male, age 76, both hemispheres 23.6
2528 Male, age 74, both hemispheres 23.2
2531 Female, age 67, both hemispheres 21.0
Entorhinal gyrus
nTPM: 24.8
1938 Female, age 85, left hemisphere 27.4
2117 Female, age 91, right hemisphere 26.2
2686 Male, age 75, right hemisphere 25.8
1787 Male, age 76, left hemisphere 25.3
2764 Male, age 80, right hemisphere 23.6
2613 Female, age 94, left hemisphere 20.6
Hippocampus, CA1
nTPM: 26.3
2749 Male, age 80, left hemisphere 32.4
1873 Female, age 85, both hemispheres 27.7
2527 Male, age 74, both hemispheres 27.5
2045 Male, age 76, both hemispheres 22.6
2082 Female, age 91, right hemisphere 21.4
Hippocampus, CA2
nTPM: 25.4
1892 Male, age 76, both hemispheres 29.4
1963 Male, age 80, left hemisphere 29.3
2249 Male, age 74, both hemispheres 24.3
2113 Female, age 91, right hemisphere 23.6
1940 Female, age 85, left hemisphere 23.0
2437 Female, age 94, left hemisphere 22.6
Hippocampus, CA3
nTPM: 22.9
1891 Female, age 85, both hemispheres 26.6
2137 Male, age 80, left hemisphere 26.4
1867 Male, age 76, both hemispheres 26.0
2861 Female, age 67, both hemispheres 21.9
2436 Male, age 74, both hemispheres 20.4
2620 Female, age 94, left hemisphere 16.1
Parahippocampal cortex
nTPM: 25.5
1850 Male, age 80, both hemispheres 34.5
1990 Female, age 91, right hemisphere 26.7
1933 Female, age 85, both hemispheres 25.7
2250 Female, age 67, right hemisphere 25.7
2692 Male, age 74, both hemispheres 25.1
2018 Male, age 76, both hemispheres 24.6
2245 Female, age 91, both hemispheres 24.5
2532 Female, age 72, left hemisphere 22.9
2622 Female, age 67, right hemisphere 22.8
2693 Female, age 94, both hemispheres 22.1
Perirhinal gyrus
nTPM: 30.5
1841 Female, age 85, right hemisphere 35.0
1847 Female, age 91, left hemisphere 31.7
2848 Male, age 76, right hemisphere 31.0
1794 Male, age 80, right hemisphere 30.4
2521 Female, age 94, right hemisphere 24.6
Subiculum
nTPM: 27.3
2438 Female, age 94, left hemisphere 44.2
1901 Male, age 80, both hemispheres 25.6
1977 Female, age 85, both hemispheres 24.8
2729 Female, age 91, right hemisphere 24.5
2619 Male, age 74, both hemispheres 22.7
2042 Male, age 76, both hemispheres 21.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 19.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.8
Samples: 197

Max nTPM: 39.3
Min nTPM: 12.5
Std nTPM: 4.2
Median nTPM: 19.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 39.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 35.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 33.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 32.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 31.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 30.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 29.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 29.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 29.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 28.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 27.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.1
FF:10153-102I9 76 years, female 60.2
FF:10169-103B7 60 years, female 56.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 43.7
Pig sample Sample description nTPM
Subiculum
nTPM: 43.8
Samples: 4

Max nTPM: 48.5
Min nTPM: 40.7
Sample A Female 48.5
Sample B Female 42.3
Sample C Male 40.7
Sample D Male 43.5
Dorsal hippocampus
nTPM: 39.4
Samples: 4

Max nTPM: 45.2
Min nTPM: 33.7
Sample A Female 41.5
Sample B Female 37.3
Sample C Male 45.2
Sample D Male 33.7
Entorhinal cortex
nTPM: 43.4
Samples: 4

Max nTPM: 46.7
Min nTPM: 42.2
Sample A Female 42.2
Sample B Female 46.7
Sample C Male 42.4
Sample D Male 42.3
Ventral hippocampus
nTPM: 37.9
Samples: 4

Max nTPM: 39.9
Min nTPM: 35.1
Sample A Female 39.9
Sample B Female 37.0
Sample C Male 35.1
Sample D Male 39.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 38.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.4
Samples: 4

Max nTPM: 43.6
Min nTPM: 35.7
Sample A Male 38.1
Sample B Male 43.6
Sample C Female 35.7
Sample D Female 36.1
Hippocampal formation
nTPM: 36.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 33.2
Sample A Male 36.5
Sample B Male 37.3
Sample C Female 36.9
Sample D Female 33.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
73606703 Antisense, RP_051130_01_E03, Mouse strain C57BL/6J (56 days, male) 0.5

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