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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCA1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
26.7
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
24.2
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
21.6
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
21.2
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
20.8
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
20.5
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
19.8
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
19.5
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
19.4
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
19.2
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
18.0
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
17.8
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
15.9
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
15.9
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
15.9
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
14.0
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
13.3
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
13.0
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
12.5
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
12.1
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
12.1
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
11.9
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
11.8
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
11.6
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
11.6
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
11.4
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
11.0
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
10.7
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
10.3
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
10.2
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
9.4
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
9.4
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
9.3
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
9.2
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
8.9
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
8.9
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
8.6
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
8.5
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
8.5
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
8.4
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
8.1
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
7.9
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
7.3
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
7.3
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
7.0
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
6.5
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
6.3
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
6.1
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
6.1
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
6.0
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
5.9
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
5.7
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
5.6
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
5.4
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
5.4
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
5.1
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
4.0
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
3.7
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
3.3
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
3.3
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
3.0
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
2.5
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
1.6
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCA1 is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
79.7
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
50.7
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
47.3
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
46.7
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
39.1
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
38.9
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
37.5
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
37.4
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
36.6
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
34.3
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
34.0
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
33.8
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
32.3
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
32.3
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
32.0
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
32.0
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
31.4
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
31.4
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
31.4
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
31.3
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
31.1
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
31.0
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
30.8
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
30.4
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
30.4
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
30.0
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
30.0
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
29.6
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
29.5
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
29.3
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
29.3
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
29.3
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
29.2
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
29.0
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
28.8
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
28.8
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
28.8
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
28.5
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
28.4
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
28.4
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
28.3
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
28.2
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
28.2
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
28.2
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
27.8
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
27.7
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
27.5
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
27.5
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
27.4
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
27.3
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
27.3
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
27.3
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
27.3
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
27.1
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
27.0
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
26.9
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
26.9
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
26.9
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
26.7
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
26.7
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
26.6
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
26.5
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
26.3
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
26.2
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
26.1
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
26.1
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
25.9
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
25.9
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
25.9
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
25.9
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
25.8
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
25.7
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
25.4
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
25.4
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
25.3
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
25.3
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
25.2
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
25.1
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
25.0
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
25.0
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
24.7
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
24.6
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
24.6
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
24.5
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
24.4
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
24.4
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
24.3
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
24.2
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
24.2
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
24.1
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
24.0
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
23.8
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
23.8
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
23.7
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
23.6
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
23.6
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
23.5
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
23.4
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
23.4
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
23.2
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
23.1
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
23.0
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
23.0
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
22.9
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
22.9
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
22.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
22.8
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
22.8
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
22.7
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
22.7
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
22.6
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
22.5
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
22.4
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
22.4
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
22.3
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
22.3
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
22.3
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
22.2
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
22.0
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
21.8
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
21.6
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
21.6
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
21.6
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
21.6
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
21.5
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
21.4
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
21.4
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
21.3
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
21.3
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
21.3
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
21.2
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
21.1
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
21.1
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
21.1
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
20.9
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
20.9
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
20.8
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
20.8
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
20.7
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
20.6
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
20.5
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
20.5
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
20.4
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
20.4
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
20.3
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
20.2
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
20.2
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
20.1
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
20.1
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
19.9
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
19.6
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
19.6
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
19.4
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
19.3
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
19.3
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
19.3
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
19.3
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
19.2
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
19.2
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
19.2
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
19.2
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
19.1
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
19.0
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
19.0
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
18.9
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
18.9
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
18.9
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
18.8
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
18.8
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
18.8
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
18.7
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
18.6
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
18.5
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
18.5
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
18.5
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
18.5
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
18.4
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
18.4
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
18.4
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
18.4
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
18.3
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
18.1
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
18.0
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
18.0
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
18.0
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
18.0
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
18.0
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
17.9
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
17.9
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
17.8
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
17.8
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
17.8
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
17.8
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
17.7
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
17.7
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
17.7
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
17.6
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
17.6
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
17.6
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
17.6
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
17.6
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
17.5
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
17.5
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
17.4
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
17.3
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
17.3
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
17.2
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
17.2
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
17.1
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
17.1
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
17.1
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
17.0
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
17.0
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
17.0
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
16.9
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
16.9
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
16.8
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
16.8
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
16.8
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
16.8
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
16.7
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
16.7
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
16.6
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
16.6
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
16.6
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
16.6
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
16.4
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
16.2
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
16.2
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
16.2
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
16.1
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
16.1
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
16.1
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
16.1
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
16.0
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
16.0
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
16.0
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
15.9
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
15.8
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
15.8
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
15.8
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
15.8
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
15.8
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
15.8
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
15.8
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
15.7
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
15.7
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
15.7
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
15.6
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
15.6
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
15.6
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
15.6
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
15.5
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
15.5
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
15.4
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
15.4
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
15.3
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
15.2
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
15.2
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
15.1
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
15.1
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
15.1
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
15.1
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
15.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
15.0
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
15.0
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
15.0
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
14.9
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
14.9
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
14.8
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
14.8
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
14.8
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
14.8
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
14.8
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
14.8
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
14.7
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
14.7
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
14.7
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
14.5
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
14.4
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
14.4
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
14.3
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
14.2
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
14.2
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
14.1
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
14.1
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
14.1
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
14.1
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
14.0
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
14.0
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
14.0
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
14.0
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
14.0
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
14.0
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
14.0
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
14.0
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
14.0
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
13.9
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
13.7
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
13.7
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
13.7
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
13.6
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
13.6
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
13.6
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
13.6
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
13.5
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
13.5
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
13.4
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
13.3
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
13.3
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
13.3
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
13.2
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
13.2
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
13.2
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
13.1
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
13.0
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
13.0
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
12.9
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
12.8
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
12.8
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
12.8
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
12.7
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
12.7
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
12.6
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
12.6
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
12.6
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
12.5
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
12.5
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
12.4
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
12.4
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
12.4
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
12.3
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
12.2
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
12.1
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
12.1
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
12.1
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
12.0
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
12.0
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
12.0
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
11.9
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
11.9
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
11.8
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
11.7
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
11.7
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
11.7
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
11.7
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
11.6
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
11.6
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
11.6
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
11.5
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
11.5
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
11.5
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
11.5
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
11.5
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
11.5
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
11.4
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
11.4
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
11.3
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
11.2
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
11.2
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
11.1
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
11.1
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
11.1
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
11.0
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
10.8
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
10.8
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
10.8
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
10.7
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
10.7
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
10.7
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
10.4
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
10.4
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
10.3
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
10.3
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
10.3
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
10.3
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
10.3
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
10.3
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
10.2
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
10.2
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
10.2
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
10.2
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
10.2
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
10.2
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
10.1
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
10.1
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
10.0
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
9.9
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
9.9
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
9.9
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
9.8
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
9.8
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
9.8
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
9.7
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
9.6
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
9.6
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
9.6
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
9.6
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
9.6
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
9.5
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
9.5
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
9.2
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
9.2
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
9.2
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
9.2
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
9.1
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
9.1
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
9.1
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
9.0
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
9.0
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
8.9
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
8.9
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
8.9
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
8.8
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
8.8
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
8.8
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
8.7
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
8.7
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
8.7
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
8.5
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
8.5
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
8.5
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
8.4
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
8.3
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
8.3
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
8.1
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
8.1
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
8.0
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
8.0
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
7.9
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
7.9
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
7.8
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
7.8
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
7.7
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
7.7
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
7.6
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
7.5
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
7.5
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
7.5
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
7.4
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
7.4
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
7.3
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
7.2
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
7.2
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
7.2
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
7.2
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
7.1
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
7.0
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
7.0
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
7.0
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
7.0
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
6.9
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
6.9
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
6.9
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
6.9
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
6.8
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
6.8
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
6.7
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
6.7
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
6.6
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
6.5
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
6.5
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
6.5
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
6.5
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
6.4
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
6.4
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
6.4
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
6.3
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
6.3
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
6.3
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
6.2
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
6.1
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
6.0
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
6.0
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
5.9
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
5.8
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
5.6
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
5.5
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
5.4
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
5.1
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
5.0
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
5.0
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
4.9
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
4.9
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
4.9
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
4.8
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
4.8
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
4.7
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
4.6
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
4.5
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
4.3
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
4.3
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
4.2
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
4.2
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
4.1
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
4.0
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
3.9
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
3.9
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
3.8
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
3.8
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
3.5
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
3.5
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
3.5
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
3.5
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
3.5
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
3.4
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
3.4
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
3.3
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
3.3
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
3.2
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
3.2
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
3.1
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
3.0
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
2.9
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
2.4
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
2.1
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
2.0
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
1.7
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
1.6
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
1.4
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCA1 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.1
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
67.8
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
62.8
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
62.1
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
59.8
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
47.0
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
37.3
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
37.1
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
33.4
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
32.2
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
31.3
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
30.9
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
30.1
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
29.7
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
29.2
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
28.9
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
28.4
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
28.1
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
28.1
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
27.9
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
27.9
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
27.8
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
27.7
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
27.3
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
27.2
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
27.1
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
27.1
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
26.9
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
26.8
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
26.6
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
25.7
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
25.5
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
25.4
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
25.3
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
25.0
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
24.9
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
24.2
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
24.1
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
24.0
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
23.7
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
23.3
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
23.2
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
23.0
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
23.0
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
22.8
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
22.7
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
22.4
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
22.0
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
21.9
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
21.5
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
21.3
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
20.9
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
20.0
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
19.8
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
19.2
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
19.1
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
19.0
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
19.0
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
18.6
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
18.3
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
18.2
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
18.1
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
18.1
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
17.7
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
16.8
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
16.6
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
16.2
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
16.2
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
16.0
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
15.8
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
15.6
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
15.5
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
15.3
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
15.1
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
15.1
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
15.0
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
14.5
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
14.3
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
14.2
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
14.0
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
13.7
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
13.6
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
13.4
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
13.1
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
12.8
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
12.2
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
11.9
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
11.6
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
11.3
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
11.2
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
11.1
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
10.9
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
10.8
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
10.4
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
9.8
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
9.4
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
8.9
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
8.4
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
7.8
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
6.7
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCA1 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.1
Number of samples
282
Samples
Sample
Description
TPM
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
62.8
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
61.2
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
49.7
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
49.4
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
45.1
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
42.7
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
42.4
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
42.3
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
41.8
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
41.3
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
38.4
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
37.5
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
36.9
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
36.3
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
35.9
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
35.7
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
35.6
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
35.5
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
35.4
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
33.5
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
33.4
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
32.4
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
31.8
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
31.7
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
31.0
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
31.0
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
30.4
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
30.3
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
30.1
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
30.0
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
29.8
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
29.2
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
29.0
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
28.7
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
28.3
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
28.0
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
27.6
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
27.6
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
27.5
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
27.1
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
26.8
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
26.8
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
26.6
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
26.2
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
26.2
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
26.0
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
26.0
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
26.0
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
25.9
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
25.9
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
25.8
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
25.7
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
25.6
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
25.4
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
25.3
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
25.1
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
24.6
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
24.5
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
24.3
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
24.0
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
23.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
23.2
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
23.1
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
22.9
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
22.8
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
22.8
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
22.6
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
22.5
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
22.4
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
22.4
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
22.0
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
21.8
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
21.8
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.7
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
21.7
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
21.7
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
21.6
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
21.5
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
21.4
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
21.2
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
21.2
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
21.2
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
21.1
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
21.0
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
20.9
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
20.8
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
20.7
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
20.6
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
20.3
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
20.3
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
20.0
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
20.0
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
19.9
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
19.7
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
19.4
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
19.3
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
19.3
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
19.2
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
19.2
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
19.2
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
19.2
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
19.2
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
18.9
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
18.8
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
18.8
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
18.8
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
18.7
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
18.7
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.7
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
18.4
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
18.2
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
18.0
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
18.0
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
18.0
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
17.9
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
17.9
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
17.8
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
17.6
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
17.3
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
17.2
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
17.1
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
17.1
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
17.1
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
17.1
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
16.9
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
16.8
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
16.8
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
16.7
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
16.5
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
16.5
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
16.5
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
16.5
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
16.5
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
16.5
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
16.5
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
16.3
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
16.0
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
16.0
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
16.0
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
15.9
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
15.9
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
15.9
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
15.8
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
15.6
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
15.6
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
15.0
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
15.0
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
14.9
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
14.9
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
14.8
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
14.8
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
14.7
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
14.6
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
14.5
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
14.5
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
14.5
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
14.4
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
14.4
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
14.4
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
14.3
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
14.0
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
13.7
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
13.6
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
13.5
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
13.3
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
13.3
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
13.2
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
13.2
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
13.2
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
13.1
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
13.0
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
12.8
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
12.6
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
12.5
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
12.4
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
12.4
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
12.2
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
12.2
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
12.2
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
12.1
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
12.1
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
11.9
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
11.8
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
11.8
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
11.8
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
11.7
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
11.7
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
11.6
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
11.5
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
11.5
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
11.5
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
11.4
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
11.4
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
11.3
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
11.3
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
11.3
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
11.2
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
11.1
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
11.0
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
11.0
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
10.9
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
10.9
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
10.6
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
10.6
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.5
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
10.4
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
10.4
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
10.2
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
10.2
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
10.2
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
10.1
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
10.1
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
9.8
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
9.8
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
9.7
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
9.5
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
9.4
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
9.4
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
9.3
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
9.2
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
9.2
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
9.2
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
9.2
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
9.1
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
9.0
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
9.0
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
8.9
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
8.6
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
8.6
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
8.5
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
8.4
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
8.1
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
8.1
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
8.1
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
7.9
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
7.9
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
7.7
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
7.7
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
7.5
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
7.5
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
7.3
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
7.3
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
7.3
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
7.2
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
7.1
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
6.9
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
6.8
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
6.7
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
6.4
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
6.3
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
6.2
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
6.2
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
5.8
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
5.7
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
5.6
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
5.4
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
5.3
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
5.3
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
5.1
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
4.8
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
4.7
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
4.5
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
4.5
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
4.4
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
4.3
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
4.2
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
4.1
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
4.0
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
3.9
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
3.6
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
3.4
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
3.1
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
2.7
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
2.7
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
2.7
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
2.0
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
1.7
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
1.6
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
1.3
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
1.0
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
0.5
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0011410003
Tumor
0.9
CPT0001340003
Tumor
0.6
CPT0088970003
Tumor
0.6
CPT0084560003
Tumor
0.6
CPT0088630003
Tumor
0.5
CPT0078800003
Tumor
0.5
CPT0077110003
Tumor
0.5
CPT0077320001
Normal
0.5
CPT0025580004
Tumor
0.4
CPT0010160003
Tumor
0.4
CPT0085670003
Tumor
0.4
CPT0084590001
Normal
0.4
CPT0001270001
Normal
0.4
CPT0012080003
Tumor
0.4
CPT0017850003
Tumor
0.4
CPT0014450004
Tumor
0.4
CPT0075720003
Tumor
0.4
CPT0006440003
Tumor
0.3
CPT0026410003
Tumor
0.3
CPT0081600003
Tumor
0.3
CPT0012180003
Tumor
0.3
CPT0092190003
Normal
0.3
CPT0077490003
Tumor
0.3
CPT0021240003
Tumor
0.3
CPT0025170003
Tumor
0.3
CPT0014370004
Tumor
0.3
CPT0065870003
Tumor
0.3
CPT0075130003
Tumor
0.3
CPT0079230003
Tumor
0.3
CPT0081990003
Tumor
0.3
CPT0088690003
Tumor
0.3
CPT0079410003
Tumor
0.2
CPT0079300001
Normal
0.2
CPT0063630003
Tumor
0.2
CPT0012640003
Normal
0.2
CPT0075170001
Normal
0.2
CPT0012370003
Tumor
0.2
CPT0071150004
Tumor
0.2
CPT0025350003
Tumor
0.2
CPT0010120001
Normal
0.2
CPT0078990003
Tumor
0.2
CPT0086870003
Tumor
0.2
CPT0012670003
Tumor
0.2
CPT0000780007
Tumor
0.2
CPT0001260009
Tumor
0.2
CPT0025880003
Tumor
0.2
CPT0025290003
Tumor
0.2
CPT0009000003
Tumor
0.2
CPT0001180009
Tumor
0.2
CPT0001190001
Normal
0.2
CPT0078510003
Tumor
0.2
CPT0000870016
Tumor
0.2
CPT0015810003
Tumor
0.2
CPT0009060003
Tumor
0.1
CPT0078830003
Tumor
0.1
CPT0066470004
Tumor
0.1
CPT0065690003
Tumor
0.1
CPT0000660001
Normal
0.1
CPT0086030003
Tumor
0.1
CPT0089020003
Tumor
0.1
CPT0088760003
Tumor
0.1
CPT0078660003
Tumor
0.1
CPT0011240003
Tumor
0.1
CPT0015910003
Tumor
0.1
CPT0065820001
Normal
0.1
CPT0069000003
Tumor
0.1
CPT0088480003
Tumor
0.1
CPT0079180003
Tumor
0.1
CPT0012280003
Tumor
0.1
CPT0006530001
Normal
0.1
CPT0092730003
Tumor
0.1
CPT0019130003
Tumor
0.1
CPT0079510001
Normal
0.1
CPT0001510001
Normal
0.1
CPT0001540009
Tumor
0.1
CPT0092790003
Tumor
0.1
CPT0079270003
Tumor
0.1
CPT0076330003
Tumor
0.1
CPT0077310003
Tumor
0.1
CPT0002370001
Normal
0.1
CPT0017450001
Normal
0.0
CPT0012920003
Normal
0.0
CPT0014130001
Normal
0.0
CPT0079430001
Normal
0.0
CPT0065750003
Tumor
0.0
CPT0066480003
Tumor
0.0
CPT0023690003
Tumor
0.0
CPT0006630003
Tumor
0.0
CPT0088570001
Normal
0.0
CPT0087040003
Tumor
0.0
CPT0069190001
Normal
0.0
CPT0088900003
Tumor
0.0
CPT0007870001
Normal
0.0
CPT0017410003
Tumor
0.0
CPT0086830003
Normal
0.0
CPT0025230003
Tumor
0.0
CPT0089460004
Tumor
0.0
CPT0075570001
Normal
0.0
CPT0063330001
Normal
0.0
CPT0075560003
Tumor
0.0
CPT0024670003
Tumor
0.0
CPT0089040001
Normal
0.0
CPT0002270011
Tumor
0.0
CPT0012290003
Normal
0.0
CPT0078930003
Tumor
0.0
CPT0014470001
Normal
0.0
CPT0063640001
Normal
0.0
CPT0066520001
Normal
0.0
CPT0086950003
Tumor
0.0
CPT0079380003
Tumor
0.0
CPT0025110003
Tumor
0.0
CPT0018250001
Normal
0.0
CPT0001230001
Normal
0.0
CPT0086820003
Tumor
0.0
CPT0082010001
Normal
0.0
CPT0086370003
Normal
0.0
CPT0010110003
Tumor
0.0
CPT0001550001
Normal
0.0
CPT0001220008
Tumor
0.0
CPT0014160003
Tumor
0.0
CPT0069010001
Normal
0.0
CPT0020020001
Normal
0.0
CPT0088640003
Normal
0.0
CPT0025610001
Normal
0.0
CPT0025920001
Normal
-0.1
CPT0078940001
Normal
-0.1
CPT0076350001
Normal
-0.1
CPT0088710001
Normal
-0.1
CPT0006900003
Tumor
-0.1
CPT0077500001
Normal
-0.1
CPT0009020003
Normal
-0.1
CPT0065930003
Tumor
-0.1
CPT0078530001
Normal
-0.1
CPT0088500001
Normal
-0.1
CPT0001350001
Normal
-0.1
CPT0000890001
Normal
-0.1
CPT0064400001
Normal
-0.1
CPT0078670001
Normal
-0.1
CPT0019160001
Normal
-0.1
CPT0020130001
Normal
-0.1
CPT0086360003
Tumor
-0.1
CPT0065810003
Tumor
-0.1
CPT0012090003
Normal
-0.1
CPT0001500009
Tumor
-0.1
CPT0015730003
Tumor
-0.1
CPT0087050003
Normal
-0.1
CPT0025050003
Tumor
-0.1
CPT0025060001
Normal
-0.1
CPT0081880003
Tumor
-0.1
CPT0002350011
Tumor
-0.1
CPT0013790003
Normal
-0.1
CPT0006730001
Normal
-0.1
CPT0092160003
Tumor
-0.1
CPT0019990003
Tumor
-0.1
CPT0092290003
Tumor
-0.1
CPT0006950001
Normal
-0.1
CPT0007860003
Tumor
-0.1
CPT0092740003
Normal
-0.1
CPT0079480003
Tumor
-0.1
CPT0010170001
Normal
-0.1
CPT0092310003
Normal
-0.1
CPT0088920001
Normal
-0.1
CPT0020120003
Tumor
-0.1
CPT0086970003
Normal
-0.1
CPT0081620001
Normal
-0.1
CPT0023710001
Normal
-0.2
CPT0023360001
Normal
-0.2
CPT0079000001
Normal
-0.2
CPT0089480003
Normal
-0.2
CPT0086890003
Normal
-0.2
CPT0078840001
Normal
-0.2
CPT0009080003
Normal
-0.2
CPT0066430001
Normal
-0.2
CPT0088550004
Tumor
-0.2
CPT0000790001
Normal
-0.2
CPT0012570003
Normal
-0.2
CPT0092800003
Normal
-0.2
CPT0088780001
Normal
-0.2
CPT0065430003
Tumor
-0.2
CPT0012900004
Tumor
-0.2
CPT0000640003
Tumor
-0.2
CPT0012770003
Normal
-0.2
CPT0023350003
Tumor
-0.2
CPT0065450001
Normal
-0.2
CPT0007470001
Normal
-0.2
CPT0024680001
Normal
-0.2
CPT0012550003
Tumor
-0.2
CPT0014350001
Normal
-0.2
CPT0077140001
Normal
-0.2
CPT0026420001
Normal
-0.3
CPT0069160003
Tumor
-0.3
CPT0063320003
Tumor
-0.3
CPT0007320003
Tumor
-0.3
CPT0064370003
Tumor
-0.4
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
