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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
101.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
97.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
72.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
69.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
65.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
64.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
63.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
62.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
60.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
60.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
48.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
46.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
44.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
40.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
40.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
35.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
27.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.0
Number of samples
231
Samples
Sample
Description
TPM
DO50799
0 years, female, NA, stage:2, alive, 540 days
149.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
119.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
93.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
89.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
75.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
70.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
69.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
64.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
64.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
63.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
63.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
61.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
59.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
57.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
57.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
56.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
55.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
51.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
49.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
45.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
41.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
39.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
36.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.6
965
Tumor
1.4
367
Tumor
1.2
497
Tumor
1.2
671
Tumor
1.1
285
Tumor
1.1
425
Tumor
1.1
921
Tumor
1.1
743
Tumor
1.1
463
Tumor
1.0
1021
Tumor
1.0
527
Tumor
1.0
967
Tumor
0.9
535
Tumor
0.9
951
Tumor
0.9
815
Tumor
0.9
385
Tumor
0.8
131
Tumor
0.8
443
Tumor
0.8
545
Tumor
0.8
661
Tumor
0.8
221
Tumor
0.8
112
Tumor
0.8
647
Tumor
0.8
737
Tumor
0.7
1031
Tumor
0.7
413
Tumor
0.7
271
Tumor
0.7
1013
Tumor
0.7
391
Tumor
0.7
331
Tumor
0.7
865
Tumor
0.7
171
Tumor
0.7
537
Tumor
0.7
957
Tumor
0.6
881
Tumor
0.6
351
Tumor
0.6
975
Tumor
0.6
277
Tumor
0.6
727
Tumor
0.6
433
Tumor
0.6
411
Tumor
0.6
817
Tumor
0.6
923
Tumor
0.6
435
Tumor
0.6
483
Tumor
0.6
665
Tumor
0.6
387
Tumor
0.6
477
Tumor
0.5
343
Tumor
0.5
363
Tumor
0.5
473
Tumor
0.5
481
Tumor
0.5
695
Tumor
0.5
471
Tumor
0.5
533
Tumor
0.5
851
Tumor
0.5
517
Tumor
0.5
641
Tumor
0.4
571
Tumor
0.4
573
Tumor
0.4
883
Tumor
0.4
355
Tumor
0.4
341
Tumor
0.4
977
Tumor
0.4
217
Tumor
0.4
357
Tumor
0.4
877
Tumor
0.4
697
Tumor
0.4
873
Tumor
0.4
455
Tumor
0.4
863
Tumor
0.4
493
Tumor
0.3
1045
Tumor
0.3
525
Tumor
0.3
925
Tumor
0.3
635
Tumor
0.3
724
Normal
0.3
913
Tumor
0.3
813
Tumor
0.3
227
Tumor
0.3
523
Tumor
0.3
465
Tumor
0.3
963
Tumor
0.3
937
Tumor
0.3
487
Tumor
0.3
814
Normal
0.3
567
Tumor
0.3
147
Tumor
0.3
297
Tumor
0.3
283
Tumor
0.3
777
Tumor
0.3
127
Tumor
0.3
261
Tumor
0.3
427
Tumor
0.3
943
Tumor
0.2
1025
Tumor
0.2
431
Tumor
0.2
445
Tumor
0.2
125
Tumor
0.2
161
Tumor
0.2
513
Tumor
0.2
135
Tumor
0.2
213
Tumor
0.2
267
Tumor
0.2
447
Tumor
0.2
123
Tumor
0.2
421
Tumor
0.2
713
Tumor
0.1
953
Tumor
0.1
515
Tumor
0.1
1043
Tumor
0.1
553
Tumor
0.1
467
Tumor
0.1
313
Tumor
0.1
741
Tumor
0.1
917
Tumor
0.0
563
Tumor
0.0
785
Tumor
0.0
113
Tumor
0.0
393
Tumor
0.0
365
Tumor
0.0
745
Tumor
0.0
1027
Tumor
0.0
195
Tumor
0.0
375
Tumor
0.0
423
Tumor
0.0
1015
Tumor
-0.1
185
Tumor
-0.1
461
Tumor
-0.1
861
Tumor
-0.1
617
Tumor
-0.1
823
Tumor
-0.1
137
Tumor
-0.1
361
Tumor
-0.1
615
Tumor
-0.1
191
Tumor
-0.1
867
Tumor
-0.1
192
Normal
-0.1
257
Tumor
-0.1
353
Tumor
-0.1
721
Tumor
-0.1
491
Tumor
-0.1
536
Normal
-0.1
187
Tumor
-0.1
663
Tumor
-0.1
744
Normal
-0.2
627
Tumor
-0.2
472
Normal
-0.2
1041
Tumor
-0.2
141
Tumor
-0.2
915
Tumor
-0.2
311
Tumor
-0.2
223
Tumor
-0.2
715
Tumor
-0.2
554
Normal
-0.2
514
Normal
-0.2
534
Normal
-0.2
672
Normal
-0.2
196
Normal
-0.2
482
Normal
-0.2
648
Normal
-0.2
448
Normal
-0.2
462
Normal
-0.2
1046
Normal
-0.2
666
Normal
-0.2
412
Normal
-0.2
728
Normal
-0.2
664
Normal
-0.2
984
Normal
-0.2
857
Tumor
-0.2
492
Normal
-0.2
858
Normal
-0.2
866
Normal
-0.2
964
Normal
-0.2
312
Normal
-0.2
557
Tumor
-0.2
516
Normal
-0.2
546
Normal
-0.3
298
Normal
-0.3
524
Normal
-0.3
332
Normal
-0.3
436
Normal
-0.3
824
Normal
-0.3
818
Normal
-0.3
778
Normal
-0.3
526
Normal
-0.3
738
Normal
-0.3
415
Tumor
-0.3
981
Tumor
-0.3
278
Normal
-0.3
742
Normal
-0.3
528
Normal
-0.3
314
Normal
-0.3
484
Normal
-0.3
214
Normal
-0.3
488
Normal
-0.3
451
Tumor
-0.3
494
Normal
-0.3
394
Normal
-0.3
636
Normal
-0.3
327
Tumor
-0.3
1026
Normal
-0.3
944
Normal
-0.3
388
Normal
-0.3
982
Normal
-0.3
444
Normal
-0.3
756
Normal
-0.3
518
Normal
-0.3
698
Normal
-0.3
938
Normal
-0.3
344
Normal
-0.3
924
Normal
-0.3
231
Tumor
-0.3
685
Tumor
-0.3
1014
Normal
-0.3
128
Normal
-0.3
816
Normal
-0.3
364
Normal
-0.3
356
Normal
-0.3
958
Normal
-0.3
124
Normal
-0.3
1016
Normal
-0.3
564
Normal
-0.3
222
Normal
-0.3
142
Normal
-0.3
146
Normal
-0.3
968
Normal
-0.3
1044
Normal
-0.3
478
Normal
-0.3
618
Normal
-0.3
572
Normal
-0.3
474
Normal
-0.3
922
Normal
-0.3
145
Tumor
-0.3
272
Normal
-0.3
464
Normal
-0.3
662
Normal
-0.3
568
Normal
-0.3
882
Normal
-0.4
918
Normal
-0.4
952
Normal
-0.4
976
Normal
-0.4
916
Normal
-0.4
392
Normal
-0.4
452
Normal
-0.4
722
Normal
-0.4
426
Normal
-0.4
926
Normal
-0.4
352
Normal
-0.4
911
Tumor
-0.4
884
Normal
-0.4
136
Normal
-0.4
258
Normal
-0.4
498
Normal
-0.4
456
Normal
-0.4
386
Normal
-0.4
1042
Normal
-0.4
966
Normal
-0.4
864
Normal
-0.4
574
Normal
-0.4
232
Normal
-0.4
955
Tumor
-0.4
1022
Normal
-0.4
446
Normal
-0.4
328
Normal
-0.4
218
Normal
-0.4
538
Normal
-0.4
262
Normal
-0.4
466
Normal
-0.4
224
Normal
-0.4
1032
Normal
-0.4
432
Normal
-0.4
286
Normal
-0.4
714
Normal
-0.4
723
Tumor
-0.4
616
Normal
-0.4
434
Normal
-0.4
558
Normal
-0.4
368
Normal
-0.4
878
Normal
-0.4
126
Normal
-0.4
422
Normal
-0.4
342
Normal
-0.4
268
Normal
-0.4
428
Normal
-0.4
358
Normal
-0.4
284
Normal
-0.4
138
Normal
-0.4
862
Normal
-0.4
468
Normal
-0.4
696
Normal
-0.4
954
Normal
-0.4
956
Normal
-0.4
416
Normal
-0.4
114
Normal
-0.4
978
Normal
-0.4
396
Normal
-0.4
354
Normal
-0.4
868
Normal
-0.4
148
Normal
-0.4
628
Normal
-0.4
874
Normal
-0.4
716
Normal
-0.4
746
Normal
-0.4
642
Normal
-0.4
212
Normal
-0.4
686
Normal
-0.4
111
Normal
-0.4
424
Normal
-0.4
376
Normal
-0.4
162
Normal
-0.4
186
Normal
-0.4
132
Normal
-0.4
1028
Normal
-0.4
228
Normal
-0.5
414
Normal
-0.5
366
Normal
-0.5
852
Normal
-0.5
912
Normal
-0.5
395
Tumor
-0.5
786
Normal
-0.5
914
Normal
-0.5
188
Normal
-0.5
384
Normal
-0.5
172
Normal
-0.5
383
Tumor
-0.6
362
Normal
-0.7
211
Tumor
-0.9
755
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
