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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
369.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
361.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
333.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
318.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
300.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
294.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
265.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
259.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
245.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
224.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
204.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
202.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
185.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
185.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
182.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
176.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
173.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
172.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
171.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
163.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
150.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
139.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
138.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
138.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
138.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
135.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
135.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
133.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
128.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
126.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
125.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
123.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
122.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
121.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
114.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
111.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
111.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
110.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
109.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
109.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
107.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
106.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
105.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
100.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
96.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
88.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
88.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
88.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
84.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
83.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
82.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
80.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
76.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
73.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
72.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
71.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
70.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
70.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
69.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
69.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
66.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
64.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
64.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
64.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
64.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
63.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
62.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
61.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
58.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
57.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
57.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
56.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
53.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
53.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
52.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
52.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
51.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
49.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
48.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
48.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
48.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
47.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
46.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
45.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
44.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
43.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
39.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
33.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.8
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
523.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
497.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
336.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
189.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
187.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
175.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
168.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
154.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
149.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
141.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
139.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
136.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
135.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
132.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
119.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
117.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
116.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
112.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
100.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
96.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
96.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
93.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
92.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
92.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
91.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
87.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
82.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
81.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
78.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
78.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
73.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
71.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
70.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
70.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
68.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
66.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
66.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
64.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
63.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
62.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
62.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
62.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
60.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
56.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
41.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
2.2
921
Tumor
2.1
697
Tumor
2.0
917
Tumor
1.9
125
Tumor
1.8
211
Tumor
1.7
923
Tumor
1.7
814
Normal
1.6
393
Tumor
1.5
1013
Tumor
1.5
357
Tumor
1.4
343
Tumor
1.3
355
Tumor
1.3
881
Tumor
1.3
695
Tumor
1.2
427
Tumor
1.1
131
Tumor
1.1
395
Tumor
1.1
271
Tumor
1.0
375
Tumor
1.0
553
Tumor
1.0
283
Tumor
1.0
953
Tumor
1.0
491
Tumor
1.0
277
Tumor
0.9
385
Tumor
0.9
195
Tumor
0.9
214
Normal
0.8
411
Tumor
0.8
161
Tumor
0.8
426
Normal
0.8
196
Normal
0.7
192
Normal
0.7
957
Tumor
0.7
465
Tumor
0.7
533
Tumor
0.7
877
Tumor
0.6
217
Tumor
0.6
191
Tumor
0.6
557
Tumor
0.6
523
Tumor
0.6
816
Normal
0.6
1031
Tumor
0.6
285
Tumor
0.5
641
Tumor
0.5
222
Normal
0.5
423
Tumor
0.5
428
Normal
0.5
916
Normal
0.5
463
Tumor
0.5
311
Tumor
0.5
394
Normal
0.5
414
Normal
0.5
513
Tumor
0.5
113
Tumor
0.5
671
Tumor
0.4
647
Tumor
0.4
685
Tumor
0.4
421
Tumor
0.4
386
Normal
0.4
455
Tumor
0.4
124
Normal
0.4
268
Normal
0.4
468
Normal
0.4
327
Tumor
0.4
413
Tumor
0.4
221
Tumor
0.4
865
Tumor
0.4
571
Tumor
0.4
272
Normal
0.4
445
Tumor
0.4
422
Normal
0.4
396
Normal
0.4
392
Normal
0.4
716
Normal
0.4
444
Normal
0.4
185
Tumor
0.4
823
Tumor
0.4
147
Tumor
0.4
722
Normal
0.3
922
Normal
0.3
466
Normal
0.3
516
Normal
0.3
388
Normal
0.3
478
Normal
0.3
258
Normal
0.3
361
Tumor
0.3
963
Tumor
0.3
467
Tumor
0.3
737
Tumor
0.3
141
Tumor
0.3
227
Tumor
0.3
728
Normal
0.3
342
Normal
0.3
344
Normal
0.3
672
Normal
0.3
267
Tumor
0.3
518
Normal
0.3
564
Normal
0.3
464
Normal
0.3
424
Normal
0.3
574
Normal
0.2
714
Normal
0.2
425
Tumor
0.2
558
Normal
0.2
232
Normal
0.2
387
Tumor
0.2
696
Normal
0.2
452
Normal
0.2
526
Normal
0.2
852
Normal
0.2
354
Normal
0.2
983
Tumor
0.2
341
Tumor
0.2
471
Tumor
0.2
492
Normal
0.2
572
Normal
0.2
188
Normal
0.2
384
Normal
0.2
312
Normal
0.2
137
Tumor
0.2
434
Normal
0.2
313
Tumor
0.2
456
Normal
0.2
627
Tumor
0.2
744
Normal
0.2
563
Tumor
0.2
686
Normal
0.2
391
Tumor
0.2
982
Normal
0.2
451
Tumor
0.2
786
Normal
0.2
358
Normal
0.2
1025
Tumor
0.1
546
Normal
0.1
738
Normal
0.1
958
Normal
0.1
713
Tumor
0.1
924
Normal
0.1
663
Tumor
0.1
218
Normal
0.1
135
Tumor
0.1
514
Normal
0.1
535
Tumor
0.1
878
Normal
0.1
742
Normal
0.1
352
Normal
0.1
817
Tumor
0.1
538
Normal
0.1
262
Normal
0.1
111
Normal
0.1
331
Tumor
0.1
365
Tumor
0.1
914
Normal
0.1
524
Normal
0.1
525
Tumor
0.1
851
Tumor
0.1
328
Normal
0.1
884
Normal
0.1
187
Tumor
0.1
286
Normal
0.1
482
Normal
0.1
1042
Normal
0.1
484
Normal
0.1
284
Normal
0.1
527
Tumor
0.1
568
Normal
0.1
723
Tumor
0.1
474
Normal
0.1
224
Normal
0.1
943
Tumor
0.0
642
Normal
0.0
978
Normal
0.0
494
Normal
0.0
874
Normal
0.0
257
Tumor
0.0
366
Normal
0.0
145
Tumor
0.0
868
Normal
0.0
618
Normal
0.0
1015
Tumor
0.0
138
Normal
0.0
534
Normal
0.0
461
Tumor
0.0
223
Tumor
0.0
977
Tumor
0.0
537
Tumor
0.0
472
Normal
0.0
146
Normal
0.0
1028
Normal
0.0
636
Normal
0.0
213
Tumor
0.0
956
Normal
0.0
864
Normal
0.0
212
Normal
0.0
228
Normal
0.0
353
Tumor
0.0
721
Tumor
0.0
778
Normal
0.0
866
Normal
0.0
447
Tumor
0.0
756
Normal
0.0
261
Tumor
0.0
1043
Tumor
0.0
858
Normal
0.0
818
Normal
0.0
883
Tumor
0.0
298
Normal
0.0
777
Tumor
-0.1
383
Tumor
-0.1
297
Tumor
-0.1
662
Normal
-0.1
362
Normal
-0.1
415
Tumor
-0.1
944
Normal
-0.1
128
Normal
-0.1
368
Normal
-0.1
363
Tumor
-0.1
123
Tumor
-0.1
314
Normal
-0.1
545
Tumor
-0.1
488
Normal
-0.1
976
Normal
-0.1
112
Tumor
-0.1
554
Normal
-0.1
715
Tumor
-0.1
661
Tumor
-0.1
443
Tumor
-0.1
278
Normal
-0.1
913
Tumor
-0.1
815
Tumor
-0.1
142
Normal
-0.1
863
Tumor
-0.1
975
Tumor
-0.1
367
Tumor
-0.1
376
Normal
-0.1
857
Tumor
-0.1
882
Normal
-0.1
498
Normal
-0.1
746
Normal
-0.1
926
Normal
-0.1
332
Normal
-0.2
481
Tumor
-0.2
416
Normal
-0.2
984
Normal
-0.2
114
Normal
-0.2
573
Tumor
-0.2
126
Normal
-0.2
938
Normal
-0.2
528
Normal
-0.2
148
Normal
-0.2
172
Normal
-0.2
1016
Normal
-0.2
824
Normal
-0.2
515
Tumor
-0.2
628
Normal
-0.2
364
Normal
-0.2
462
Normal
-0.2
911
Tumor
-0.2
493
Tumor
-0.2
1032
Normal
-0.2
952
Normal
-0.2
446
Normal
-0.2
912
Normal
-0.2
536
Normal
-0.3
483
Tumor
-0.3
616
Normal
-0.3
615
Tumor
-0.3
968
Normal
-0.3
186
Normal
-0.3
861
Tumor
-0.3
351
Tumor
-0.3
412
Normal
-0.3
1026
Normal
-0.3
136
Normal
-0.3
432
Normal
-0.3
964
Normal
-0.3
862
Normal
-0.3
1041
Tumor
-0.3
132
Normal
-0.3
925
Tumor
-0.3
951
Tumor
-0.3
981
Tumor
-0.3
954
Normal
-0.3
617
Tumor
-0.3
127
Tumor
-0.3
162
Normal
-0.3
356
Normal
-0.3
867
Tumor
-0.3
497
Tumor
-0.4
1014
Normal
-0.4
433
Tumor
-0.4
1021
Tumor
-0.4
664
Normal
-0.4
517
Tumor
-0.4
785
Tumor
-0.4
966
Normal
-0.4
873
Tumor
-0.4
231
Tumor
-0.4
745
Tumor
-0.4
967
Tumor
-0.5
487
Tumor
-0.5
567
Tumor
-0.5
724
Normal
-0.5
1022
Normal
-0.5
448
Normal
-0.5
635
Tumor
-0.5
743
Tumor
-0.5
755
Tumor
-0.5
955
Tumor
-0.6
473
Tumor
-0.6
727
Tumor
-0.6
477
Tumor
-0.6
666
Normal
-0.6
1027
Tumor
-0.6
741
Tumor
-0.7
436
Normal
-0.7
431
Tumor
-0.7
698
Normal
-0.7
648
Normal
-0.7
171
Tumor
-0.7
937
Tumor
-0.8
1046
Normal
-0.8
1045
Tumor
-0.8
1044
Normal
-0.8
665
Tumor
-0.9
965
Tumor
-1.0
918
Normal
-1.1
435
Tumor
-1.4
915
Tumor
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
