We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
372.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 169.5
2301
Female, age 85, both hemispheres
195.0
1984
Male, age 76, both hemispheres
190.6
2188
Female, age 91, both hemispheres
154.8
2090
Male, age 80, both hemispheres
137.5
Dorsal cochlear nucleus nTPM: 153.5
2187
Female, age 91, both hemispheres
202.3
2058
Male, age 76, both hemispheres
177.1
2370
Male, age 61, both hemispheres
151.1
2802
Male, age 74, right hemisphere
128.3
2378
Male, age 80, both hemispheres
108.8
Dorsal tegmental nucleus nTPM: 158.5
2083
Male, age 80, both hemispheres
194.9
1936
Male, age 76, left hemisphere
155.9
2358
Male, age 61, both hemispheres
155.6
2326
Male, age 74, both hemispheres
127.4
Dorsolateral tegmental area nTPM: 159.0
2141
Male, age 76, both hemispheres
217.5
2751
Female, age 85, both hemispheres
208.5
2654
Male, age 80, both hemispheres
185.1
2360
Male, age 74, both hemispheres
111.8
2337
Male, age 61, both hemispheres
72.3
Kolliker-Fuse nucleus nTPM: 185.0
2163
Male, age 80, both hemispheres
217.5
2793
Female, age 91, left hemisphere
195.2
2315
Male, age 76, right hemisphere
142.2
Lateral lemniscal nuclei nTPM: 290.5
2169
Male, age 76, both hemispheres
366.0
2453
Male, age 74, right hemisphere
327.6
2746
Female, age 85, left hemisphere
295.6
2036
Male, age 80, both hemispheres
294.6
2320
Female, age 91, left hemisphere
168.9
Lateral parabrachial nucleus nTPM: 203.9
2139
Female, age 85, right hemisphere
328.6
2790
Male, age 61, both hemispheres
199.8
2013
Male, age 80, both hemispheres
199.2
2792
Male, age 76, both hemispheres
87.8
Lateral vestibular nucleus nTPM: 190.5
2184
Male, age 76, both hemispheres
204.5
2311
Male, age 80, both hemispheres
176.4
Locus coeruleus nTPM: 274.9
2123
Female, age 91, both hemispheres
428.1
2720
Male, age 74, both hemispheres
349.8
2162
Male, age 80, both hemispheres
241.9
1980
Male, age 76, both hemispheres
239.4
2014
Male, age 55, unknown
234.7
2788
Male, age 74, unknown
226.2
2317
Female, age 72, unknown
204.4
Medial parabrachial nucleus nTPM: 216.0
2854
Male, age 80, both hemispheres
262.0
2170
Female, age 91, both hemispheres
249.6
2156
Male, age 61, both hemispheres
199.1
2786
Male, age 76, both hemispheres
185.6
2463
Female, age 85, right hemisphere
183.9
Medial periolivary nuclei nTPM: 273.7
2171
Female, age 85, both hemispheres
428.6
2063
Male, age 76, both hemispheres
380.0
2791
Male, age 74, right hemisphere
239.0
2081
Male, age 80, both hemispheres
163.4
2458
Female, age 91, both hemispheres
157.5
Motor facial nucleus nTPM: 291.0
2062
Male, age 76, both hemispheres
402.6
2365
Male, age 74, right hemisphere
319.5
2697
Female, age 85, both hemispheres
314.3
2327
Male, age 80, both hemispheres
297.3
2126
Male, age 61, both hemispheres
227.3
2795
Female, age 91, both hemispheres
184.8
Motor trigeminal nucleus nTPM: 214.1
2079
Male, age 80, both hemispheres
268.9
2335
Male, age 61, both hemispheres
227.2
2560
Male, age 74, both hemispheres
217.8
2309
Male, age 76, both hemispheres
191.2
2321
Female, age 91, both hemispheres
165.6
Nuclei of the trapezoid body nTPM: 340.8
2159
Male, age 61, both hemispheres
521.5
2735
Female, age 85, both hemispheres
434.0
1983
Male, age 76, both hemispheres
350.5
2166
Male, age 80, both hemispheres
233.2
2368
Female, age 91, both hemispheres
164.7
Nucleus raphe magnus nTPM: 372.3
2160
Male, age 61, both hemispheres
667.4
2172
Female, age 85, both hemispheres
490.5
2455
Male, age 74, both hemispheres
382.2
2328
Male, age 80, both hemispheres
269.4
2051
Male, age 76, both hemispheres
245.3
2459
Female, age 91, both hemispheres
179.2
Paramedian reticular nucleus nTPM: 236.6
2050
Female, age 85, both hemispheres
348.3
2313
Male, age 61, both hemispheres
246.3
2057
Male, age 80, both hemispheres
215.9
2052
Male, age 76, both hemispheres
136.0
Pedunculopontine tegmental nucleus nTPM: 199.3
1921
Female, age 85, both hemispheres
225.2
2334
Male, age 80, both hemispheres
194.4
2338
Male, age 61, both hemispheres
178.1
Pontine nuclei nTPM: 328.1
2727
Male, age 61, right hemisphere
522.4
2787
Female, age 85, both hemispheres
517.0
1863
Male, age 55, unknown
373.2
1968
Male, age 76, left hemisphere
325.7
2109
Female, age 72, unknown
323.9
2454
Male, age 74, left hemisphere
226.7
2115
Male, age 80, left hemisphere
186.9
2319
Female, age 91, both hemispheres
149.3
Pontine raphe nucleus nTPM: 300.6
2122
Female, age 85, midline
350.1
2853
Male, age 76, midline
251.1
Posteroventral cochlear nucleus nTPM: 153.0
2752
Female, age 85, both hemispheres
275.8
2070
Male, age 76, both hemispheres
224.0
2371
Male, age 61, both hemispheres
123.3
2341
Male, age 80, both hemispheres
100.4
2135
Female, age 91, both hemispheres
41.7
Principal sensory trigeminal nucleus nTPM: 298.1
2158
Male, age 61, both hemispheres
547.9
2008
Male, age 80, left hemisphere
295.7
2324
Male, age 76, both hemispheres
184.5
2367
Female, age 91, left hemisphere
164.2
Reticular pontine nucleus, caudal nTPM: 228.5
2332
Male, age 80, right hemisphere
330.4
2092
Male, age 76, both hemispheres
270.2
2457
Female, age 91, both hemispheres
165.1
2559
Male, age 74, both hemispheres
148.2
Reticular pontine nucleus, oral nTPM: 227.4
2361
Male, age 74, both hemispheres
297.3
2012
Female, age 85, both hemispheres
284.7
2167
Male, age 76, both hemispheres
202.7
1939
Male, age 80, both hemispheres
201.9
2366
Female, age 91, both hemispheres
150.5
Reticulotegmental nucleus nTPM: 218.3
2325
Male, age 76, both hemispheres
284.8
2333
Male, age 80, both hemispheres
199.8
2452
Male, age 74, both hemispheres
195.6
2322
Female, age 91, both hemispheres
193.2
Spinal trigeminal nucleus, oral nTPM: 213.0
2737
Female, age 85, both hemispheres
236.7
2164
Male, age 80, both hemispheres
210.1
1978
Male, age 76, both hemispheres
192.0
Subcoeruleus area nTPM: 233.4
2323
Female, age 91, left hemisphere
342.5
1958
Male, age 80, both hemispheres
264.8
2089
Male, age 76, left hemisphere
255.4
2369
Female, age 85, left hemisphere
164.0
2451
Male, age 74, both hemispheres
140.2
Superior olive nTPM: 271.8
1875
Female, age 85, both hemispheres
397.5
2364
Male, age 74, right hemisphere
266.1
2329
Male, age 80, right hemisphere
247.3
2020
Male, age 76, both hemispheres
244.6
2561
Female, age 91, both hemispheres
203.5
Ventral periolivary nuclei nTPM: 297.3
2130
Female, age 85, both hemispheres
374.4
2165
Male, age 80, both hemispheres
357.1
2794
Female, age 91, left hemisphere
232.9
2023
Male, age 76, both hemispheres
225.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 235.9
2449
Male, age 74, both hemispheres
347.3
2840
Female, age 85, both hemispheres
271.1
1959
Male, age 76, both hemispheres
267.2
2161
Male, age 80, both hemispheres
221.0
2359
Male, age 61, both hemispheres
180.7
2456
Female, age 91, both hemispheres
128.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
322.6
Pig sample
Sample description
nTPM
Pons nTPM: 322.6
Samples: 4
Max nTPM: 584.7
Min nTPM: 199.6
Sample A
Female
584.7
Sample B
Female
231.5
Sample C
Male
199.6
Sample D
Male
274.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.