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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
259.0
Sample id
Sample description
nTPM
Amygdala nTPM: 210.1
2814
Male, age 76, right hemisphere
357.6
1987
Female, age 91, left hemisphere
269.6
2517
Female, age 94, left hemisphere
186.7
2514
Male, age 75, right hemisphere
127.2
2695
Female, age 67, right hemisphere
109.4
Basal amygdala nTPM: 256.5
2243
Female, age 91, right hemisphere
418.7
2685
Female, age 94, left hemisphere
301.0
1955
Male, age 76, both hemispheres
278.7
2110
Male, age 80, left hemisphere
264.0
2827
Female, age 67, right hemisphere
147.1
2609
Male, age 75, right hemisphere
129.6
Central amygdala nTPM: 254.7
1905
Male, age 76, both hemispheres
316.7
2826
Female, age 94, left hemisphere
304.0
2239
Male, age 80, left hemisphere
281.9
2701
Female, age 91, right hemisphere
245.2
2515
Male, age 75, right hemisphere
125.6
Corticomedial amygdala nTPM: 259.0
2242
Female, age 91, right hemisphere
349.5
2829
Male, age 80, left hemisphere
348.7
2240
Male, age 76, both hemispheres
270.3
2429
Female, age 94, left hemisphere
268.0
2535
Female, age 67, right hemisphere
204.8
2428
Male, age 75, right hemisphere
112.7
Lateral amygdala nTPM: 225.0
2534
Female, age 94, left hemisphere
447.3
1883
Male, age 76, both hemispheres
316.8
2255
Female, age 91, right hemisphere
235.1
2256
Male, age 80, left hemisphere
177.6
2516
Male, age 75, right hemisphere
92.9
2830
Female, age 67, right hemisphere
80.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
170.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 170.4
Samples: 152
Max nTPM: 649.2
Min nTPM: 11.3
Std nTPM: 112.5
Median nTPM: 147.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
649.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
631.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
422.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
418.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
416.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
411.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
398.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
377.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
374.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
363.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
345.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
342.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
336.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
333.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
331.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
328.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
304.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
304.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
301.3
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
293.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
289.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
289.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
285.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
280.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
278.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
276.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
264.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
261.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
257.9
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
255.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
244.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
243.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
241.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
241.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
237.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
235.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
235.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
235.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
230.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
228.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
226.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
225.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
220.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
214.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
213.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
207.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
204.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
203.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
200.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
200.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
200.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
199.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
198.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
198.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
195.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
194.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
194.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
193.1
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
188.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
186.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
179.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
176.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
175.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
173.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
172.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
165.8
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
163.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
161.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
161.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
156.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
156.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
156.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
155.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
152.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
151.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
149.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
145.3
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
144.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
143.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
142.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
137.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
136.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
135.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
130.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
130.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
129.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
125.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
125.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
124.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
124.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
124.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
121.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
120.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
120.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
117.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
114.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
113.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
113.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
113.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
105.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
103.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
103.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
100.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
98.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
97.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
96.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
92.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
90.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
85.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
84.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
84.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
84.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
82.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
82.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
79.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
77.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
76.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
76.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
76.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
75.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
74.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
72.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
72.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
71.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
71.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
68.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
68.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
67.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
66.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
66.0
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
64.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
63.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
62.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
59.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
58.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
58.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
57.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
56.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
54.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
45.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
45.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
41.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
40.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
40.1
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
40.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
33.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
29.4
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
26.8
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
24.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
18.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
13.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
11.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1017.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1017.4
Samples: 4
Max nTPM: 1091.2
Min nTPM: 951.7
Sample A
Male
1091.2
Sample B
Male
951.7
Sample C
Female
1019.7
Sample D
Female
1006.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.