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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
APMAP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
138.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
514.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
443.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
397.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
354.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
339.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
333.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
311.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
311.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
308.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
305.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
296.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
295.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
290.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
290.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
284.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
279.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
278.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
276.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
273.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
273.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
272.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
267.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
266.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
262.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
261.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
260.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
259.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
252.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
251.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
250.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
238.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
237.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
237.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
236.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
236.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
236.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
234.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
234.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
233.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
233.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
232.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
231.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
231.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
230.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
229.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
229.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
227.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
224.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
222.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
221.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
221.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
220.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
219.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
219.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
219.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
219.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
216.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
215.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
215.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
214.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
214.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
212.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
210.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
209.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
208.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
207.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
205.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
205.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
204.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
203.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
199.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
198.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
198.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
197.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
197.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
196.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
196.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
195.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
194.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
193.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
193.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
191.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
190.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
190.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
189.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
187.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
187.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
186.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
186.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
185.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
185.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
184.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
184.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
182.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
182.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
181.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
181.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
180.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
180.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
179.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
179.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
179.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
177.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
176.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
175.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
175.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
175.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
174.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
173.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
173.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
170.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
169.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
168.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
168.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
167.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
166.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
166.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
166.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
165.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
165.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
164.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
164.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
164.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
163.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
163.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
163.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
163.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
162.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
161.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
161.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
161.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
160.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
159.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
158.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
158.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
156.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
155.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
153.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
151.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
150.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
150.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
150.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
149.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
149.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
148.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
148.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
148.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
147.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
146.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
144.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
143.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
143.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
143.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
143.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
142.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
141.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
141.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
141.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
139.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
139.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
138.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
138.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
136.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
135.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
134.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
134.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
134.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
133.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
132.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
132.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
131.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
131.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
130.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
129.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
128.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
128.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
127.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
127.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
126.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
125.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
124.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
124.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
123.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
123.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
122.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
122.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
122.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
122.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
121.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
120.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
119.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
119.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
119.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
119.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
118.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
117.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
117.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
115.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
115.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
115.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
114.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
114.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
113.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
113.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
112.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
112.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
112.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
111.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
110.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
110.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
109.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
107.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
107.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
107.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
107.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
107.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
106.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
106.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
105.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
105.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
105.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
105.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
105.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
104.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
104.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
104.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
104.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
102.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
102.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
102.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
101.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
101.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
99.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
99.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
98.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
96.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
96.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
95.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
95.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
94.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
93.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
92.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
92.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
91.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
91.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
90.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
90.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
90.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
89.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
89.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
87.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
87.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
86.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
86.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
86.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
85.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
84.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
82.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
81.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
81.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
80.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
80.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
80.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
79.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
79.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
78.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
78.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
77.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
77.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
76.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
76.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
76.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
75.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
75.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
75.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
74.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
74.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
73.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
73.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
72.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
72.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
72.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
72.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
70.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
69.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
69.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
68.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
67.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
66.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
66.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
65.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
65.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
64.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
62.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
62.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
61.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
60.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
60.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
59.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
58.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
57.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
56.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
55.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
55.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
54.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
54.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
54.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
53.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
53.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
50.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
50.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
50.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
50.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
49.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
48.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
47.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
47.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
47.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
45.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
44.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
44.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
41.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
41.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
38.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
31.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.3
125
Tumor
1.2
445
Tumor
0.9
387
Tumor
0.8
937
Tumor
0.8
851
Tumor
0.8
755
Tumor
0.8
727
Tumor
0.8
327
Tumor
0.7
1027
Tumor
0.7
257
Tumor
0.7
981
Tumor
0.7
1043
Tumor
0.6
636
Normal
0.5
392
Normal
0.5
191
Tumor
0.5
332
Normal
0.5
558
Normal
0.5
481
Tumor
0.5
468
Normal
0.5
358
Normal
0.5
452
Normal
0.4
647
Tumor
0.4
145
Tumor
0.4
968
Normal
0.4
523
Tumor
0.4
426
Normal
0.4
261
Tumor
0.4
286
Normal
0.4
863
Tumor
0.4
172
Normal
0.4
564
Normal
0.4
368
Normal
0.4
414
Normal
0.4
571
Tumor
0.4
314
Normal
0.4
912
Normal
0.4
376
Normal
0.4
341
Tumor
0.4
672
Normal
0.4
195
Tumor
0.3
218
Normal
0.3
617
Tumor
0.3
723
Tumor
0.3
721
Tumor
0.3
422
Normal
0.3
217
Tumor
0.3
857
Tumor
0.3
572
Normal
0.3
926
Normal
0.3
494
Normal
0.3
132
Normal
0.3
648
Normal
0.3
186
Normal
0.3
616
Normal
0.3
228
Normal
0.3
1014
Normal
0.3
568
Normal
0.3
778
Normal
0.3
526
Normal
0.3
785
Tumor
0.3
113
Tumor
0.3
777
Tumor
0.3
232
Normal
0.3
866
Normal
0.3
742
Normal
0.3
394
Normal
0.3
354
Normal
0.3
277
Tumor
0.3
488
Normal
0.3
111
Normal
0.3
696
Normal
0.3
388
Normal
0.3
221
Tumor
0.2
123
Tumor
0.2
756
Normal
0.2
466
Normal
0.2
618
Normal
0.2
351
Tumor
0.2
353
Tumor
0.2
214
Normal
0.2
738
Normal
0.2
196
Normal
0.2
412
Normal
0.2
136
Normal
0.2
662
Normal
0.2
222
Normal
0.2
424
Normal
0.2
628
Normal
0.2
148
Normal
0.2
714
Normal
0.2
491
Tumor
0.2
944
Normal
0.2
114
Normal
0.2
278
Normal
0.2
258
Normal
0.2
212
Normal
0.2
864
Normal
0.2
1021
Tumor
0.2
352
Normal
0.2
342
Normal
0.2
137
Tumor
0.2
686
Normal
0.2
955
Tumor
0.2
862
Normal
0.2
615
Tumor
0.2
722
Normal
0.2
162
Normal
0.2
128
Normal
0.2
786
Normal
0.2
224
Normal
0.2
124
Normal
0.2
635
Tumor
0.2
518
Normal
0.1
446
Normal
0.1
528
Normal
0.1
958
Normal
0.1
262
Normal
0.1
138
Normal
0.1
1044
Normal
0.1
938
Normal
0.1
455
Tumor
0.1
954
Normal
0.1
331
Tumor
0.1
574
Normal
0.1
436
Normal
0.1
984
Normal
0.1
852
Normal
0.1
514
Normal
0.1
284
Normal
0.1
433
Tumor
0.1
432
Normal
0.1
487
Tumor
0.1
187
Tumor
0.1
924
Normal
0.1
272
Normal
0.1
384
Normal
0.1
467
Tumor
0.1
918
Normal
0.1
396
Normal
0.1
728
Normal
0.1
666
Normal
0.1
982
Normal
0.1
142
Normal
0.1
344
Normal
0.1
642
Normal
0.1
456
Normal
0.1
922
Normal
0.1
271
Tumor
0.1
952
Normal
0.1
312
Normal
0.1
126
Normal
0.1
357
Tumor
0.1
462
Normal
0.1
737
Tumor
0.1
744
Normal
0.1
554
Normal
0.1
567
Tumor
0.1
953
Tumor
0.1
868
Normal
0.1
664
Normal
0.1
976
Normal
0.1
1022
Normal
0.1
1013
Tumor
0.1
1026
Normal
0.1
713
Tumor
0.1
386
Normal
0.0
356
Normal
0.0
328
Normal
0.0
362
Normal
0.0
431
Tumor
0.0
921
Tumor
0.0
956
Normal
0.0
816
Normal
0.0
966
Normal
0.0
524
Normal
0.0
391
Tumor
0.0
1032
Normal
0.0
527
Tumor
0.0
366
Normal
0.0
534
Normal
0.0
484
Normal
0.0
546
Normal
0.0
978
Normal
0.0
482
Normal
0.0
464
Normal
0.0
298
Normal
0.0
818
Normal
0.0
641
Tumor
0.0
1031
Tumor
0.0
492
Normal
0.0
361
Tumor
0.0
1015
Tumor
0.0
223
Tumor
0.0
448
Normal
0.0
698
Normal
0.0
146
Normal
0.0
444
Normal
0.0
416
Normal
0.0
741
Tumor
0.0
858
Normal
0.0
884
Normal
0.0
716
Normal
0.0
415
Tumor
0.0
1016
Normal
0.0
474
Normal
0.0
363
Tumor
-0.1
878
Normal
-0.1
746
Normal
-0.1
428
Normal
-0.1
364
Normal
-0.1
882
Normal
-0.1
537
Tumor
-0.1
192
Normal
-0.1
538
Normal
-0.1
188
Normal
-0.1
421
Tumor
-0.1
665
Tumor
-0.1
1028
Normal
-0.1
695
Tumor
-0.1
824
Normal
-0.1
914
Normal
-0.1
365
Tumor
-0.1
873
Tumor
-0.1
975
Tumor
-0.1
916
Normal
-0.1
563
Tumor
-0.1
161
Tumor
-0.1
536
Normal
-0.1
112
Tumor
-0.1
343
Tumor
-0.1
1042
Normal
-0.1
411
Tumor
-0.1
135
Tumor
-0.2
557
Tumor
-0.2
813
Tumor
-0.2
313
Tumor
-0.2
967
Tumor
-0.2
147
Tumor
-0.2
472
Normal
-0.2
874
Normal
-0.2
817
Tumor
-0.2
477
Tumor
-0.2
533
Tumor
-0.2
434
Normal
-0.2
227
Tumor
-0.2
1046
Normal
-0.2
573
Tumor
-0.2
171
Tumor
-0.2
478
Normal
-0.2
815
Tumor
-0.2
964
Normal
-0.2
516
Normal
-0.2
913
Tumor
-0.2
285
Tumor
-0.2
915
Tumor
-0.2
423
Tumor
-0.2
1045
Tumor
-0.3
267
Tumor
-0.3
268
Normal
-0.3
498
Normal
-0.3
517
Tumor
-0.3
515
Tumor
-0.3
963
Tumor
-0.3
943
Tumor
-0.3
883
Tumor
-0.3
627
Tumor
-0.4
463
Tumor
-0.4
513
Tumor
-0.4
185
Tumor
-0.4
375
Tumor
-0.4
425
Tumor
-0.4
231
Tumor
-0.4
435
Tumor
-0.4
213
Tumor
-0.4
127
Tumor
-0.4
443
Tumor
-0.4
497
Tumor
-0.4
525
Tumor
-0.4
393
Tumor
-0.4
925
Tumor
-0.4
671
Tumor
-0.4
385
Tumor
-0.4
814
Normal
-0.4
553
Tumor
-0.5
141
Tumor
-0.5
881
Tumor
-0.5
447
Tumor
-0.5
483
Tumor
-0.5
395
Tumor
-0.5
451
Tumor
-0.5
535
Tumor
-0.5
283
Tumor
-0.5
663
Tumor
-0.6
465
Tumor
-0.6
965
Tumor
-0.6
297
Tumor
-0.6
685
Tumor
-0.6
877
Tumor
-0.6
957
Tumor
-0.6
861
Tumor
-0.6
867
Tumor
-0.6
1025
Tumor
-0.6
367
Tumor
-0.6
545
Tumor
-0.6
823
Tumor
-0.6
977
Tumor
-0.6
355
Tumor
-0.7
383
Tumor
-0.7
471
Tumor
-0.7
724
Normal
-0.7
923
Tumor
-0.7
983
Tumor
-0.7
917
Tumor
-0.7
911
Tumor
-0.8
461
Tumor
-0.8
697
Tumor
-0.8
473
Tumor
-0.8
427
Tumor
-0.9
743
Tumor
-0.9
311
Tumor
-0.9
661
Tumor
-0.9
951
Tumor
-1.0
131
Tumor
-1.0
493
Tumor
-1.1
211
Tumor
-1.1
413
Tumor
-1.2
1041
Tumor
-1.2
865
Tumor
-1.2
715
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.