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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNTA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
390.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNTA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
76.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
26.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
1.1
727
Tumor
0.9
915
Tumor
0.8
981
Tumor
0.7
171
Tumor
0.7
313
Tumor
0.7
943
Tumor
0.7
123
Tumor
0.7
647
Tumor
0.6
261
Tumor
0.6
523
Tumor
0.6
546
Normal
0.6
1013
Tumor
0.6
298
Normal
0.6
698
Normal
0.6
362
Normal
0.5
465
Tumor
0.5
278
Normal
0.5
463
Tumor
0.5
921
Tumor
0.5
958
Normal
0.5
125
Tumor
0.5
568
Normal
0.5
112
Tumor
0.5
572
Normal
0.5
526
Normal
0.4
534
Normal
0.4
426
Normal
0.4
448
Normal
0.4
554
Normal
0.4
1045
Tumor
0.4
113
Tumor
0.4
1046
Normal
0.4
737
Tumor
0.4
137
Tumor
0.4
332
Normal
0.4
483
Tumor
0.4
388
Normal
0.4
494
Normal
0.4
472
Normal
0.4
422
Normal
0.4
393
Tumor
0.4
982
Normal
0.4
574
Normal
0.4
414
Normal
0.4
564
Normal
0.4
366
Normal
0.4
277
Tumor
0.4
1022
Normal
0.4
394
Normal
0.3
365
Tumor
0.3
484
Normal
0.3
516
Normal
0.3
864
Normal
0.3
436
Normal
0.3
545
Tumor
0.3
514
Normal
0.3
272
Normal
0.3
148
Normal
0.3
518
Normal
0.3
964
Normal
0.3
376
Normal
0.3
423
Tumor
0.3
1027
Tumor
0.3
192
Normal
0.3
443
Tumor
0.3
824
Normal
0.3
862
Normal
0.3
524
Normal
0.3
922
Normal
0.3
865
Tumor
0.3
232
Normal
0.3
491
Tumor
0.3
411
Tumor
0.3
172
Normal
0.3
286
Normal
0.3
425
Tumor
0.3
745
Tumor
0.2
384
Normal
0.2
953
Tumor
0.2
111
Normal
0.2
146
Normal
0.2
196
Normal
0.2
124
Normal
0.2
818
Normal
0.2
1044
Normal
0.2
911
Tumor
0.2
662
Normal
0.2
341
Tumor
0.2
912
Normal
0.2
132
Normal
0.2
428
Normal
0.2
396
Normal
0.2
342
Normal
0.2
816
Normal
0.2
968
Normal
0.2
1014
Normal
0.2
147
Tumor
0.2
648
Normal
0.2
392
Normal
0.2
558
Normal
0.2
424
Normal
0.2
616
Normal
0.2
874
Normal
0.2
742
Normal
0.2
186
Normal
0.2
141
Tumor
0.2
482
Normal
0.2
938
Normal
0.2
1016
Normal
0.2
114
Normal
0.2
432
Normal
0.2
744
Normal
0.2
127
Tumor
0.2
528
Normal
0.2
357
Tumor
0.2
358
Normal
0.2
228
Normal
0.2
468
Normal
0.2
926
Normal
0.2
628
Normal
0.2
515
Tumor
0.2
386
Normal
0.2
615
Tumor
0.2
312
Normal
0.2
1042
Normal
0.2
131
Tumor
0.2
635
Tumor
0.2
212
Normal
0.2
477
Tumor
0.2
214
Normal
0.2
487
Tumor
0.2
978
Normal
0.1
918
Normal
0.1
957
Tumor
0.1
916
Normal
0.1
488
Normal
0.1
1026
Normal
0.1
984
Normal
0.1
977
Tumor
0.1
258
Normal
0.1
138
Normal
0.1
636
Normal
0.1
965
Tumor
0.1
356
Normal
0.1
728
Normal
0.1
224
Normal
0.1
642
Normal
0.1
352
Normal
0.1
284
Normal
0.1
462
Normal
0.1
861
Tumor
0.1
937
Tumor
0.1
666
Normal
0.1
257
Tumor
0.1
128
Normal
0.1
884
Normal
0.1
142
Normal
0.1
786
Normal
0.1
162
Normal
0.1
387
Tumor
0.1
136
Normal
0.1
262
Normal
0.1
723
Tumor
0.1
314
Normal
0.1
858
Normal
0.1
517
Tumor
0.1
492
Normal
0.1
924
Normal
0.1
665
Tumor
0.1
1028
Normal
0.1
868
Normal
0.1
466
Normal
0.1
976
Normal
0.1
956
Normal
0.1
923
Tumor
0.1
866
Normal
0.1
474
Normal
0.1
191
Tumor
0.1
966
Normal
0.1
1032
Normal
0.1
664
Normal
0.1
421
Tumor
0.1
222
Normal
0.1
738
Normal
0.1
218
Normal
0.1
497
Tumor
0.1
538
Normal
0.1
881
Tumor
0.0
882
Normal
0.0
444
Normal
0.0
161
Tumor
0.0
672
Normal
0.0
446
Normal
0.0
354
Normal
0.0
756
Normal
0.0
867
Tumor
0.0
746
Normal
0.0
1015
Tumor
0.0
852
Normal
0.0
695
Tumor
0.0
268
Normal
0.0
478
Normal
0.0
878
Normal
0.0
954
Normal
0.0
641
Tumor
0.0
283
Tumor
0.0
914
Normal
0.0
863
Tumor
0.0
451
Tumor
0.0
452
Normal
0.0
741
Tumor
0.0
481
Tumor
0.0
815
Tumor
0.0
368
Normal
0.0
185
Tumor
0.0
1041
Tumor
0.0
427
Tumor
0.0
573
Tumor
0.0
967
Tumor
0.0
873
Tumor
0.0
297
Tumor
0.0
412
Normal
-0.1
944
Normal
-0.1
1043
Tumor
-0.1
618
Normal
-0.1
221
Tumor
-0.1
353
Tumor
-0.1
464
Normal
-0.1
433
Tumor
-0.1
785
Tumor
-0.1
498
Normal
-0.1
975
Tumor
-0.1
963
Tumor
-0.1
456
Normal
-0.1
952
Normal
-0.1
344
Normal
-0.1
391
Tumor
-0.1
743
Tumor
-0.1
364
Normal
-0.1
145
Tumor
-0.1
571
Tumor
-0.1
271
Tumor
-0.1
955
Tumor
-0.1
473
Tumor
-0.1
188
Normal
-0.1
913
Tumor
-0.1
755
Tumor
-0.1
431
Tumor
-0.1
445
Tumor
-0.2
285
Tumor
-0.2
416
Normal
-0.2
434
Normal
-0.2
563
Tumor
-0.2
267
Tumor
-0.2
455
Tumor
-0.2
513
Tumor
-0.2
187
Tumor
-0.2
351
Tumor
-0.2
536
Normal
-0.2
195
Tumor
-0.2
361
Tumor
-0.2
126
Normal
-0.2
1025
Tumor
-0.2
525
Tumor
-0.2
883
Tumor
-0.3
537
Tumor
-0.3
461
Tumor
-0.3
714
Normal
-0.3
778
Normal
-0.3
851
Tumor
-0.3
375
Tumor
-0.3
663
Tumor
-0.3
311
Tumor
-0.3
627
Tumor
-0.3
363
Tumor
-0.3
877
Tumor
-0.3
724
Normal
-0.3
533
Tumor
-0.3
857
Tumor
-0.3
213
Tumor
-0.3
231
Tumor
-0.3
328
Normal
-0.3
823
Tumor
-0.3
447
Tumor
-0.3
617
Tumor
-0.3
227
Tumor
-0.3
413
Tumor
-0.3
135
Tumor
-0.4
471
Tumor
-0.4
777
Tumor
-0.4
716
Normal
-0.4
223
Tumor
-0.4
493
Tumor
-0.4
217
Tumor
-0.4
817
Tumor
-0.4
395
Tumor
-0.4
696
Normal
-0.4
1031
Tumor
-0.4
467
Tumor
-0.4
686
Normal
-0.4
722
Normal
-0.4
527
Tumor
-0.4
671
Tumor
-0.5
567
Tumor
-0.5
814
Normal
-0.5
355
Tumor
-0.5
385
Tumor
-0.5
553
Tumor
-0.5
331
Tumor
-0.6
1021
Tumor
-0.6
343
Tumor
-0.6
383
Tumor
-0.6
917
Tumor
-0.7
813
Tumor
-0.7
415
Tumor
-0.7
951
Tumor
-0.7
697
Tumor
-0.7
983
Tumor
-0.8
925
Tumor
-0.8
557
Tumor
-0.8
715
Tumor
-0.9
685
Tumor
-0.9
327
Tumor
-0.9
367
Tumor
-1.0
535
Tumor
-1.0
721
Tumor
-1.1
661
Tumor
-1.1
713
Tumor
-1.1
211
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
