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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC23B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
93.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
82.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
81.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
77.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
76.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
61.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
59.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
58.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
54.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
53.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
52.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
52.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
47.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
46.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
46.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
44.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
42.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
40.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
40.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
39.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
28.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC23B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
84.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
43.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
19.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.8
223
Tumor
0.7
925
Tumor
0.7
147
Tumor
0.7
745
Tumor
0.6
647
Tumor
0.6
1027
Tumor
0.6
171
Tumor
0.6
1021
Tumor
0.5
123
Tumor
0.5
353
Tumor
0.5
743
Tumor
0.5
523
Tumor
0.5
573
Tumor
0.4
567
Tumor
0.4
257
Tumor
0.4
467
Tumor
0.4
191
Tumor
0.4
341
Tumor
0.4
571
Tumor
0.4
331
Tumor
0.4
277
Tumor
0.4
937
Tumor
0.4
537
Tumor
0.3
271
Tumor
0.3
557
Tumor
0.3
187
Tumor
0.3
951
Tumor
0.3
724
Normal
0.3
913
Tumor
0.3
145
Tumor
0.3
385
Tumor
0.3
141
Tumor
0.3
817
Tumor
0.3
755
Tumor
0.2
211
Tumor
0.2
267
Tumor
0.2
685
Tumor
0.2
851
Tumor
0.2
443
Tumor
0.2
545
Tumor
0.2
231
Tumor
0.2
617
Tumor
0.2
483
Tumor
0.2
217
Tumor
0.2
387
Tumor
0.2
533
Tumor
0.2
515
Tumor
0.2
113
Tumor
0.2
823
Tumor
0.1
161
Tumor
0.1
721
Tumor
0.1
222
Normal
0.1
881
Tumor
0.1
351
Tumor
0.1
921
Tumor
0.1
221
Tumor
0.1
635
Tumor
0.1
213
Tumor
0.1
977
Tumor
0.1
285
Tumor
0.1
867
Tumor
0.1
162
Normal
0.1
365
Tumor
0.1
433
Tumor
0.1
777
Tumor
0.1
641
Tumor
0.1
111
Normal
0.1
461
Tumor
0.1
332
Normal
0.1
497
Tumor
0.1
186
Normal
0.1
114
Normal
0.1
355
Tumor
0.1
375
Tumor
0.1
137
Tumor
0.1
218
Normal
0.1
746
Normal
0.1
865
Tumor
0.1
135
Tumor
0.0
473
Tumor
0.0
648
Normal
0.0
446
Normal
0.0
911
Tumor
0.0
785
Tumor
0.0
196
Normal
0.0
663
Tumor
0.0
314
Normal
0.0
195
Tumor
0.0
172
Normal
0.0
464
Normal
0.0
125
Tumor
0.0
465
Tumor
0.0
455
Tumor
0.0
393
Tumor
0.0
436
Normal
0.0
965
Tumor
0.0
435
Tumor
0.0
456
Normal
0.0
481
Tumor
0.0
297
Tumor
0.0
298
Normal
0.0
957
Tumor
0.0
883
Tumor
0.0
451
Tumor
0.0
737
Tumor
0.0
148
Normal
0.0
628
Normal
0.0
487
Tumor
0.0
124
Normal
0.0
432
Normal
0.0
142
Normal
0.0
411
Tumor
N/A
395
Tumor
0.0
664
Normal
0.0
1016
Normal
0.0
728
Normal
0.0
136
Normal
0.0
618
Normal
0.0
427
Tumor
0.0
128
Normal
0.0
262
Normal
0.0
452
Normal
0.0
636
Normal
0.0
1041
Tumor
0.0
126
Normal
0.0
665
Tumor
0.0
284
Normal
0.0
434
Normal
0.0
396
Normal
0.0
185
Tumor
0.0
312
Normal
0.0
466
Normal
0.0
214
Normal
0.0
258
Normal
0.0
224
Normal
0.0
232
Normal
0.0
527
Tumor
0.0
394
Normal
0.0
1026
Normal
0.0
278
Normal
0.0
517
Tumor
0.0
741
Tumor
0.0
742
Normal
0.0
874
Normal
0.0
877
Tumor
0.0
666
Normal
0.0
428
Normal
0.0
188
Normal
0.0
392
Normal
0.0
268
Normal
0.0
261
Tumor
-0.1
955
Tumor
-0.1
564
Normal
-0.1
786
Normal
-0.1
574
Normal
-0.1
697
Tumor
-0.1
228
Normal
-0.1
127
Tumor
-0.1
642
Normal
-0.1
568
Normal
-0.1
138
Normal
-0.1
534
Normal
-0.1
212
Normal
-0.1
756
Normal
-0.1
286
Normal
-0.1
912
Normal
-0.1
391
Tumor
-0.1
627
Tumor
-0.1
878
Normal
-0.1
914
Normal
-0.1
192
Normal
-0.1
227
Tumor
-0.1
444
Normal
-0.1
367
Tumor
-0.1
482
Normal
-0.1
462
Normal
-0.1
1013
Tumor
-0.1
868
Normal
-0.1
738
Normal
-0.1
388
Normal
-0.1
558
Normal
-0.1
744
Normal
-0.1
368
Normal
-0.1
313
Tumor
-0.1
474
Normal
-0.1
966
Normal
-0.1
525
Tumor
-0.1
361
Tumor
-0.1
358
Normal
-0.1
343
Tumor
-0.1
416
Normal
-0.1
272
Normal
-0.1
386
Normal
-0.1
938
Normal
-0.1
383
Tumor
-0.1
864
Normal
-0.1
423
Tumor
-0.1
384
Normal
-0.1
468
Normal
-0.1
518
Normal
-0.1
132
Normal
-0.1
1025
Tumor
-0.1
376
Normal
-0.1
535
Tumor
-0.1
328
Normal
-0.1
572
Normal
-0.1
978
Normal
-0.1
366
Normal
-0.1
424
Normal
-0.1
923
Tumor
-0.1
463
Tumor
-0.1
671
Tumor
-0.1
563
Tumor
-0.1
472
Normal
-0.1
713
Tumor
-0.1
363
Tumor
-0.1
952
Normal
-0.1
917
Tumor
-0.1
553
Tumor
-0.1
882
Normal
-0.2
983
Tumor
-0.2
672
Normal
-0.2
447
Tumor
-0.2
546
Normal
-0.2
412
Normal
-0.2
356
Normal
-0.2
431
Tumor
-0.2
873
Tumor
-0.2
723
Tumor
-0.2
422
Normal
-0.2
858
Normal
-0.2
824
Normal
-0.2
421
Tumor
-0.2
362
Normal
-0.2
963
Tumor
-0.2
915
Tumor
-0.2
426
Normal
-0.2
357
Tumor
-0.2
964
Normal
-0.2
146
Normal
-0.2
493
Tumor
-0.2
816
Normal
-0.2
1042
Normal
-0.2
283
Tumor
-0.2
696
Normal
-0.2
861
Tumor
-0.2
815
Tumor
-0.2
414
Normal
-0.2
311
Tumor
-0.2
477
Tumor
-0.2
884
Normal
-0.2
862
Normal
-0.2
554
Normal
-0.2
926
Normal
-0.2
494
Normal
-0.2
1014
Normal
-0.2
714
Normal
-0.2
615
Tumor
-0.2
866
Normal
-0.2
778
Normal
-0.2
722
Normal
-0.2
956
Normal
-0.2
813
Tumor
-0.2
662
Normal
-0.2
968
Normal
-0.2
976
Normal
-0.2
814
Normal
-0.2
471
Tumor
-0.2
488
Normal
-0.2
484
Normal
-0.2
514
Normal
-0.2
944
Normal
-0.2
526
Normal
-0.2
536
Normal
-0.2
342
Normal
-0.2
425
Tumor
-0.2
982
Normal
-0.2
953
Tumor
-0.3
967
Tumor
-0.3
852
Normal
-0.3
492
Normal
-0.3
818
Normal
-0.3
695
Tumor
-0.3
528
Normal
-0.3
513
Tumor
-0.3
352
Normal
-0.3
524
Normal
-0.3
1015
Tumor
-0.3
448
Normal
-0.3
616
Normal
-0.3
1044
Normal
-0.3
354
Normal
-0.3
478
Normal
-0.3
857
Tumor
-0.3
344
Normal
-0.3
445
Tumor
-0.3
975
Tumor
-0.3
491
Tumor
-0.3
686
Normal
-0.3
364
Normal
-0.3
1032
Normal
-0.3
698
Normal
-0.3
1028
Normal
-0.3
922
Normal
-0.3
954
Normal
-0.3
1043
Tumor
-0.3
1045
Tumor
-0.3
413
Tumor
-0.3
918
Normal
-0.3
131
Tumor
-0.4
716
Normal
-0.4
1022
Normal
-0.4
415
Tumor
-0.4
112
Tumor
-0.4
498
Normal
-0.4
661
Tumor
-0.4
958
Normal
-0.4
516
Normal
-0.4
984
Normal
-0.4
916
Normal
-0.4
943
Tumor
-0.4
1031
Tumor
-0.4
727
Tumor
-0.4
924
Normal
-0.4
1046
Normal
-0.4
863
Tumor
-0.4
538
Normal
-0.4
981
Tumor
-0.5
715
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.