MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.6 nTPM
HPA Brain:49.9 nTPM
GTEx:51.6 nTPM
FANTOM5:61.9 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:111.5 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.9
2019 Male, age 18, unknown 60.7
2586 Male, age 75, left hemisphere 55.5
2411 Female, age 72, unknown 54.6
1870 Female, age 42, unknown 53.8
2666 Male, age 74, left hemisphere 50.4
1830 Male, age 51, unknown 47.6
1833 Male, age 53, unknown 46.9
1827 Male, age 72, unknown 45.4
2828 Female, age 72, unknown 45.4
2219 Male, age 76, both hemispheres 38.5
Dorsal raphe nucleus
nTPM: 49.1
2047 Male, age 72, unknown 53.0
2750 Male, age 76, both hemispheres 50.6
2016 Female, age 72, unknown 48.5
1828 Male, age 53, unknown 47.9
2298 Female, age 72, unknown 45.8
Inferior colliculus
nTPM: 42.6
2849 Male, age 72, unknown 46.1
1848 Female, age 42, unknown 45.6
1890 Male, age 53, unknown 41.3
2097 Female, age 72, unknown 37.4
Median raphe nucleus
nTPM: 47.3
2220 Male, age 76, midline 47.3
Periaquaductal grey, anterior
nTPM: 46.4
1795 Male, age 51, unknown 47.9
2502 Female, age 75, unknown 46.5
1947 Male, age 18, unknown 45.0
Periaquaductal grey, dorsal
nTPM: 43.0
2464 Female, age 72, unknown 45.8
1840 Male, age 53, unknown 45.0
2850 Male, age 76, both hemispheres 43.7
1831 Male, age 72, unknown 37.6
Periaquaductal grey, lateral
nTPM: 46.0
2140 Male, age 76, both hemispheres 47.3
2272 Male, age 74, both hemispheres 46.9
2053 Male, age 18, unknown 43.8
Pretectal area
nTPM: 48.3
2007 Male, age 72, unknown 57.6
1817 Female, age 42, unknown 54.3
2407 Male, age 75, both hemispheres 52.1
2224 Female, age 72, unknown 48.9
1815 Male, age 53, unknown 48.7
1944 Female, age 72, unknown 47.3
1816 Male, age 51, unknown 46.4
2825 Male, age 18, unknown 46.3
2273 Male, age 74, both hemispheres 44.9
2667 Female, age 75, unknown 42.9
2316 Male, age 76, right hemisphere 41.7
Red nucleus
nTPM: 47.7
2584 Male, age 75, left hemisphere 57.5
2785 Male, age 18, unknown 55.6
2769 Male, age 72, unknown 50.5
1865 Male, age 51, unknown 49.3
2227 Male, age 72, unknown 48.4
1954 Female, age 42, unknown 45.5
2503 Female, age 72, unknown 45.5
2588 Male, age 74, left hemisphere 45.5
1821 Female, age 72, unknown 44.0
1904 Male, age 53, unknown 44.0
2725 Female, age 75, unknown 43.7
2823 Male, age 76, right hemisphere 43.5
Substantia nigra
nTPM: 46.8
2583 Male, age 75, right hemisphere 57.4
1941 Male, age 53, unknown 51.8
2590 Female, age 75, unknown 49.5
1851 Male, age 51, unknown 48.7
1916 Female, age 42, unknown 47.5
1889 Female, age 72, unknown 46.1
2409 Female, age 72, unknown 45.1
2665 Male, age 74, both hemispheres 41.5
2241 Male, age 72, unknown 40.7
2699 Male, age 18, unknown 40.1
Superior colliculus
nTPM: 46.3
2668 Female, age 75, unknown 52.9
2664 Male, age 75, both hemispheres 51.4
1913 Female, age 42, unknown 48.4
1839 Male, age 51, unknown 47.6
1895 Male, age 76, right hemisphere 45.6
1796 Male, age 53, unknown 45.3
2087 Female, age 72, unknown 44.7
1995 Male, age 72, unknown 43.2
2587 Male, age 74, left hemisphere 42.3
2261 Male, age 18, unknown 42.1
Ventral tegmental area
nTPM: 46.2
2223 Female, age 72, unknown 52.9
2410 Female, age 72, unknown 49.0
2021 Male, age 53, unknown 47.7
1915 Female, age 42, unknown 43.8
1942 Male, age 51, unknown 43.0
2218 Male, age 76, both hemispheres 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.6
Samples: 139

Max nTPM: 103.7
Min nTPM: 34.1
Std nTPM: 10.7
Median nTPM: 49.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 103.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 80.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 79.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 76.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 76.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 69.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 69.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 68.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 67.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.9
FF:10158-103A5 76 years, female 61.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 22.7
Sample A Female 27.6
Sample B Female 23.3
Sample C Male 22.7
Sample D Male 26.0
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 37.0
Min nTPM: 16.9
Sample A Female 37.0
Sample B Female 23.1
Sample C Male 16.9
Sample D Male 18.8
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 22.7
Min nTPM: 19.6
Sample B Female 21.0
Sample C Male 22.7
Sample D Male 19.6
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 26.2
Min nTPM: 21.7
Sample A Female 26.2
Sample B Female 24.7
Sample C Male 21.7
Sample D Male 23.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 111.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.6
Samples: 4

Max nTPM: 114.8
Min nTPM: 108.1
Sample A Male 110.4
Sample B Male 112.9
Sample C Female 108.1
Sample D Female 114.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
413802 Antisense, RP_040809_01_F01, Mouse strain C57BL/6J (56 days, male) 14.2

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