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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB5IF is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
97.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
420.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
347.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
345.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
262.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
254.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
243.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
242.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
241.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
234.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
232.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
230.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
225.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
224.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
220.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
220.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
215.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
213.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
210.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
203.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
199.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
199.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
199.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
196.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
195.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
194.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
191.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
187.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
184.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
183.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
183.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
183.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
179.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
178.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
177.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
175.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
173.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
171.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
169.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
168.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
166.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
166.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
163.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
158.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
157.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
157.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
155.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
155.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
155.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
154.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
153.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
150.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
147.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
147.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
146.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
144.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
144.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
144.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
143.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
142.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
141.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
139.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
139.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
138.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
137.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
136.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
135.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
134.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
134.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
132.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
131.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
130.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
130.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
130.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
130.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
129.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
129.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
129.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
129.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
128.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
127.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
127.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
125.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
125.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
125.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
124.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
124.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
123.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
123.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
122.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
121.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
121.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
121.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
121.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
119.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
119.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
118.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
118.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
118.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
117.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
117.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
116.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
115.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
115.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
114.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
114.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
113.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
112.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
112.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
112.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
111.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
111.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
111.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
109.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
109.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
109.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
108.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
108.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
108.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
108.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
108.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
107.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
107.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
106.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
106.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
105.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
105.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
104.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
104.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
104.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
104.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
103.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
103.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
103.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
103.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
102.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
101.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
101.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
101.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
100.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
100.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
99.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
99.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
98.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
98.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
98.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
98.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
98.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
98.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
97.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
97.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
97.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
97.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
97.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
96.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
96.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
96.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
94.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
94.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
93.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
93.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
93.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
93.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
93.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
92.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
92.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
92.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
92.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
92.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
90.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
90.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
90.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
90.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
90.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
89.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
89.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
88.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
88.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
88.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
88.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
87.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
87.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
87.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
87.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
86.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
86.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
86.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
86.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
85.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
85.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
85.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
84.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
84.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
82.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
82.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
81.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
80.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
80.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
80.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
79.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
79.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
79.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
79.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
78.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
78.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
76.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
76.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
76.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
76.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
75.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
75.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
75.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
75.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
75.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
74.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
74.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
74.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
73.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
73.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
73.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
72.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
72.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
71.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
70.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
69.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
69.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
69.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
69.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
69.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
69.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
68.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
68.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
68.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
67.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
67.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
67.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
67.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
66.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
65.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
65.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
65.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
64.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
64.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
64.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
63.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
63.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
63.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
62.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
61.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
61.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
60.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
60.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
60.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
60.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
59.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
59.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
58.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
57.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
56.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
56.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
55.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
54.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
54.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
54.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
53.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
53.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
53.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
51.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
49.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
48.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
47.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
47.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
47.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
47.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
45.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
44.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
44.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
42.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
38.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
37.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
35.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
31.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
172
Normal
1.7
231
Tumor
1.5
123
Tumor
1.4
161
Tumor
1.3
925
Tumor
1.2
491
Tumor
1.2
185
Tumor
1.1
148
Normal
1.1
188
Normal
1.1
186
Normal
1.1
745
Tumor
1.1
257
Tumor
1.0
223
Tumor
1.0
567
Tumor
1.0
537
Tumor
1.0
1027
Tumor
0.9
171
Tumor
0.9
571
Tumor
0.9
395
Tumor
0.8
443
Tumor
0.8
533
Tumor
0.8
162
Normal
0.8
313
Tumor
0.8
435
Tumor
0.7
527
Tumor
0.7
663
Tumor
0.7
573
Tumor
0.7
227
Tumor
0.7
851
Tumor
0.7
823
Tumor
0.7
953
Tumor
0.7
513
Tumor
0.7
964
Normal
0.7
525
Tumor
0.7
857
Tumor
0.7
963
Tumor
0.6
357
Tumor
0.6
976
Normal
0.5
125
Tumor
0.5
648
Normal
0.5
341
Tumor
0.4
423
Tumor
0.4
817
Tumor
0.4
526
Normal
0.4
951
Tumor
0.4
1013
Tumor
0.4
258
Normal
0.4
421
Tumor
0.4
267
Tumor
0.4
741
Tumor
0.4
563
Tumor
0.4
187
Tumor
0.3
351
Tumor
0.3
647
Tumor
0.3
518
Normal
0.3
852
Normal
0.3
135
Tumor
0.3
363
Tumor
0.3
815
Tumor
0.3
937
Tumor
0.3
411
Tumor
0.3
671
Tumor
0.3
393
Tumor
0.3
534
Normal
0.3
514
Normal
0.3
191
Tumor
0.3
515
Tumor
0.2
516
Normal
0.2
553
Tumor
0.2
546
Normal
0.2
824
Normal
0.2
353
Tumor
0.2
196
Normal
0.2
528
Normal
0.2
278
Normal
0.2
436
Normal
0.2
966
Normal
0.2
713
Tumor
0.2
557
Tumor
0.2
217
Tumor
0.2
222
Normal
0.1
665
Tumor
0.1
477
Tumor
0.1
488
Normal
0.1
664
Normal
0.1
358
Normal
0.1
816
Normal
0.1
422
Normal
0.1
218
Normal
0.1
392
Normal
0.1
955
Tumor
0.1
666
Normal
0.1
111
Normal
0.1
113
Tumor
0.1
314
Normal
0.1
114
Normal
0.1
956
Normal
0.1
221
Tumor
0.1
722
Normal
0.1
396
Normal
0.1
412
Normal
0.1
858
Normal
0.1
432
Normal
0.1
112
Tumor
0.1
484
Normal
0.1
481
Tumor
0.1
342
Normal
0.1
361
Tumor
0.1
386
Normal
0.1
327
Tumor
0.1
212
Normal
0.0
391
Tumor
0.0
362
Normal
0.0
268
Normal
0.0
523
Tumor
0.0
686
Normal
0.0
332
Normal
0.0
387
Tumor
0.0
524
Normal
0.0
517
Tumor
0.0
483
Tumor
0.0
497
Tumor
0.0
424
Normal
0.0
462
Normal
0.0
343
Tumor
0.0
232
Normal
0.0
375
Tumor
0.0
356
Normal
0.0
697
Tumor
0.0
277
Tumor
0.0
448
Normal
0.0
451
Tumor
0.0
455
Tumor
0.0
385
Tumor
0.0
145
Tumor
-0.1
228
Normal
-0.1
662
Normal
-0.1
298
Normal
-0.1
312
Normal
-0.1
414
Normal
-0.1
466
Normal
-0.1
482
Normal
-0.1
428
Normal
-0.1
981
Tumor
-0.1
147
Tumor
-0.1
714
Normal
-0.1
724
Normal
-0.1
452
Normal
-0.1
352
Normal
-0.1
923
Tumor
-0.1
465
Tumor
-0.1
344
Normal
-0.1
572
Normal
-0.1
394
Normal
-0.1
538
Normal
-0.1
415
Tumor
-0.2
416
Normal
-0.2
413
Tumor
-0.2
272
Normal
-0.2
354
Normal
-0.2
944
Normal
-0.2
696
Normal
-0.2
1043
Tumor
-0.2
365
Tumor
-0.2
742
Normal
-0.2
492
Normal
-0.2
195
Tumor
-0.2
554
Normal
-0.2
695
Tumor
-0.2
286
Normal
-0.2
468
Normal
-0.2
864
Normal
-0.2
467
Tumor
-0.2
535
Tumor
-0.2
494
Normal
-0.2
388
Normal
-0.2
938
Normal
-0.2
698
Normal
-0.2
464
Normal
-0.2
1044
Normal
-0.2
564
Normal
-0.2
214
Normal
-0.2
427
Tumor
-0.2
982
Normal
-0.2
262
Normal
-0.3
224
Normal
-0.3
126
Normal
-0.3
978
Normal
-0.3
738
Normal
-0.3
943
Tumor
-0.3
426
Normal
-0.3
355
Tumor
-0.3
132
Normal
-0.3
568
Normal
-0.3
873
Tumor
-0.3
311
Tumor
-0.3
433
Tumor
-0.3
957
Tumor
-0.3
716
Normal
-0.3
818
Normal
-0.3
463
Tumor
-0.3
926
Normal
-0.3
1046
Normal
-0.3
425
Tumor
-0.3
331
Tumor
-0.3
297
Tumor
-0.3
137
Tumor
-0.3
558
Normal
-0.4
364
Normal
-0.4
384
Normal
-0.4
661
Tumor
-0.4
672
Normal
-0.4
431
Tumor
-0.4
865
Tumor
-0.4
1045
Tumor
-0.4
983
Tumor
-0.4
383
Tumor
-0.4
127
Tumor
-0.4
142
Normal
-0.4
954
Normal
-0.4
777
Tumor
-0.4
474
Normal
-0.4
1032
Normal
-0.4
328
Normal
-0.4
915
Tumor
-0.4
284
Normal
-0.4
124
Normal
-0.4
545
Tumor
-0.4
376
Normal
-0.5
493
Tumor
-0.5
685
Tumor
-0.5
366
Normal
-0.5
1014
Normal
-0.5
574
Normal
-0.5
616
Normal
-0.5
456
Normal
-0.5
744
Normal
-0.5
1015
Tumor
-0.5
721
Tumor
-0.5
447
Tumor
-0.5
1016
Normal
-0.5
446
Normal
-0.5
471
Tumor
-0.5
1028
Normal
-0.6
434
Normal
-0.6
977
Tumor
-0.6
1026
Normal
-0.6
445
Tumor
-0.6
285
Tumor
-0.6
737
Tumor
-0.6
536
Normal
-0.6
472
Normal
-0.6
444
Normal
-0.6
874
Normal
-0.6
213
Tumor
-0.6
952
Normal
-0.6
1022
Normal
-0.6
984
Normal
-0.6
283
Tumor
-0.7
728
Normal
-0.7
723
Tumor
-0.7
138
Normal
-0.7
1025
Tumor
-0.7
916
Normal
-0.7
261
Tumor
-0.7
778
Normal
-0.7
861
Tumor
-0.7
461
Tumor
-0.7
271
Tumor
-0.7
868
Normal
-0.7
478
Normal
-0.7
367
Tumor
-0.7
141
Tumor
-0.8
1042
Normal
-0.8
924
Normal
-0.8
498
Normal
-0.8
922
Normal
-0.8
1021
Tumor
-0.8
862
Normal
-0.8
975
Tumor
-0.8
866
Normal
-0.8
368
Normal
-0.8
813
Tumor
-0.8
487
Tumor
-0.8
136
Normal
-0.9
615
Tumor
-0.9
917
Tumor
-0.9
128
Normal
-0.9
958
Normal
-1.0
746
Normal
-1.0
715
Tumor
-1.0
867
Tumor
-1.0
727
Tumor
-1.0
617
Tumor
-1.0
863
Tumor
-1.1
1031
Tumor
-1.1
743
Tumor
-1.1
146
Normal
-1.2
918
Normal
-1.2
211
Tumor
-1.3
618
Normal
-1.3
785
Tumor
-1.3
756
Normal
-1.3
1041
Tumor
-1.4
967
Tumor
-1.4
786
Normal
-1.4
814
Normal
-1.5
192
Normal
-1.5
131
Tumor
-1.5
755
Tumor
-1.6
473
Tumor
-1.8
968
Normal
-1.9
641
Tumor
-1.9
921
Tumor
-2.1
965
Tumor
-2.1
627
Tumor
-2.7
635
Tumor
-3.1
642
Normal
-3.6
628
Normal
-3.8
636
Normal
-3.8
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.