MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.8 nTPM
HPA Brain:17.7 nTPM
GTEx:25.8 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:3.2 nTPM
Mouse:0.1 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
1827 Male, age 72, unknown 17.8
1830 Male, age 51, unknown 16.8
2411 Female, age 72, unknown 16.4
1833 Male, age 53, unknown 15.0
1870 Female, age 42, unknown 15.0
2828 Female, age 72, unknown 15.0
2019 Male, age 18, unknown 14.6
2586 Male, age 75, left hemisphere 14.1
2666 Male, age 74, left hemisphere 12.3
2219 Male, age 76, both hemispheres 11.5
Dorsal raphe nucleus
nTPM: 14.9
1828 Male, age 53, unknown 16.4
2016 Female, age 72, unknown 15.1
2047 Male, age 72, unknown 14.9
2298 Female, age 72, unknown 14.8
2750 Male, age 76, both hemispheres 13.3
Inferior colliculus
nTPM: 17.7
1848 Female, age 42, unknown 19.0
2097 Female, age 72, unknown 18.7
1890 Male, age 53, unknown 18.0
2849 Male, age 72, unknown 15.2
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 17.7
1947 Male, age 18, unknown 19.4
2502 Female, age 75, unknown 19.2
1795 Male, age 51, unknown 14.4
Periaquaductal grey, dorsal
nTPM: 14.7
2464 Female, age 72, unknown 15.7
1840 Male, age 53, unknown 14.7
1831 Male, age 72, unknown 14.4
2850 Male, age 76, both hemispheres 14.2
Periaquaductal grey, lateral
nTPM: 14.0
2053 Male, age 18, unknown 15.2
2272 Male, age 74, both hemispheres 14.5
2140 Male, age 76, both hemispheres 12.2
Pretectal area
nTPM: 15.4
2407 Male, age 75, both hemispheres 18.4
1944 Female, age 72, unknown 17.0
2273 Male, age 74, both hemispheres 16.8
2667 Female, age 75, unknown 16.8
2007 Male, age 72, unknown 16.1
1816 Male, age 51, unknown 15.8
2316 Male, age 76, right hemisphere 15.2
2825 Male, age 18, unknown 13.9
2224 Female, age 72, unknown 13.1
1817 Female, age 42, unknown 13.0
1815 Male, age 53, unknown 12.9
Red nucleus
nTPM: 15.6
2584 Male, age 75, left hemisphere 17.7
2588 Male, age 74, left hemisphere 17.0
1821 Female, age 72, unknown 16.5
2503 Female, age 72, unknown 16.3
2823 Male, age 76, right hemisphere 16.2
1865 Male, age 51, unknown 15.9
2769 Male, age 72, unknown 15.6
2785 Male, age 18, unknown 15.5
2227 Male, age 72, unknown 14.9
2725 Female, age 75, unknown 14.8
1954 Female, age 42, unknown 14.5
1904 Male, age 53, unknown 12.8
Substantia nigra
nTPM: 15.8
1941 Male, age 53, unknown 19.1
1916 Female, age 42, unknown 16.4
2241 Male, age 72, unknown 16.1
2583 Male, age 75, right hemisphere 16.1
1889 Female, age 72, unknown 15.7
2590 Female, age 75, unknown 15.7
1851 Male, age 51, unknown 15.3
2665 Male, age 74, both hemispheres 14.9
2699 Male, age 18, unknown 14.4
2409 Female, age 72, unknown 14.0
Superior colliculus
nTPM: 15.4
1895 Male, age 76, right hemisphere 17.5
1839 Male, age 51, unknown 16.8
2087 Female, age 72, unknown 16.7
2664 Male, age 75, both hemispheres 16.6
2587 Male, age 74, left hemisphere 16.4
2261 Male, age 18, unknown 15.4
1796 Male, age 53, unknown 14.7
1995 Male, age 72, unknown 14.6
2668 Female, age 75, unknown 13.3
1913 Female, age 42, unknown 12.2
Ventral tegmental area
nTPM: 13.5
1915 Female, age 42, unknown 15.1
2410 Female, age 72, unknown 14.7
2021 Male, age 53, unknown 14.6
1942 Male, age 51, unknown 12.8
2218 Male, age 76, both hemispheres 12.5
2223 Female, age 72, unknown 11.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.8
Samples: 139

Max nTPM: 47.4
Min nTPM: 16.4
Std nTPM: 5.8
Median nTPM: 24.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 42.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 38.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 37.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.3
FF:10158-103A5 76 years, female 14.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.7
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.9
Sample A Female 2.4
Sample B Female 1.6
Sample C Male 1.9
Sample D Male 0.9
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 5.0
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 2.2
Sample C Male 2.9
Sample D Male 5.0
Periaqueductal gray
nTPM: 2.1
Samples: 3

Max nTPM: 2.2
Min nTPM: 2.0
Sample B Female 2.2
Sample C Male 2.0
Sample D Male 2.1
Superior colliculi
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.2
Sample A Female 3.3
Sample B Female 2.2
Sample C Male 3.4
Sample D Male 3.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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