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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
161.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
126.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
122.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
104.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
101.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
99.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
98.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
93.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
92.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
90.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
86.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
86.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
85.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
83.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
82.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
82.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
81.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
78.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
78.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
75.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
74.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
73.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
72.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
71.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
71.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
70.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
70.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
69.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
69.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
69.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
68.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
68.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
67.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
67.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
67.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
66.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
66.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
66.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
66.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
66.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
66.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
66.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
64.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
64.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
64.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
64.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
64.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
63.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
62.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
62.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
62.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
61.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
61.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
60.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
59.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
59.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
58.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
58.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
58.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
57.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
57.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
56.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
56.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
56.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
56.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
56.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
56.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
55.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
55.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
54.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
54.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
54.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
54.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
54.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
54.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
53.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
53.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
53.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
52.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
52.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
52.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
52.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
50.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
50.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
49.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
49.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
49.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
49.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
49.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
48.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
48.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
48.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
48.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
47.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
47.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
46.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
46.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
46.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
46.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
46.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
45.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
45.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
45.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
45.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
45.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
45.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
45.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
45.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
45.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
44.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
44.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
43.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
43.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
43.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
43.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
40.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
40.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
39.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
38.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
38.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
38.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
38.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
37.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
37.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
37.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
32.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
32.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
30.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
30.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
28.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.8
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
141.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
121.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
119.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
112.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
107.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
105.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
100.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
97.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
96.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
94.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
94.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
90.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
85.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
84.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
83.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
83.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
82.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
81.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
78.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
78.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
78.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
78.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
77.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
76.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
75.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
75.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
75.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
73.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
72.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
72.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
70.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
70.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
70.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
69.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
68.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
68.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
68.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
68.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
68.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
67.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
67.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
67.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
66.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
66.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
66.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
66.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
66.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
66.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
65.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
65.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
64.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
64.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
60.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
59.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
59.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
58.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
58.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
58.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
58.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
58.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
58.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
57.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
56.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
56.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
55.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
55.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
54.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
54.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
52.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
52.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
52.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
51.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
51.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
50.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
50.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
50.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
50.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
50.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
49.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
49.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
48.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
48.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
48.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
47.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
47.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
46.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
46.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
46.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
46.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
45.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
45.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
45.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
45.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
43.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
43.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
42.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
42.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
40.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
40.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
38.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
36.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
35.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
0.6
1027
Tumor
0.5
777
Tumor
0.4
955
Tumor
0.4
944
Normal
0.4
981
Tumor
0.4
741
Tumor
0.4
513
Tumor
0.4
953
Tumor
0.3
514
Normal
0.3
525
Tumor
0.3
755
Tumor
0.3
1022
Normal
0.3
484
Normal
0.3
1026
Normal
0.3
257
Tumor
0.3
728
Normal
0.3
723
Tumor
0.3
527
Tumor
0.3
756
Normal
0.2
978
Normal
0.2
1021
Tumor
0.2
745
Tumor
0.2
713
Tumor
0.2
448
Normal
0.2
738
Normal
0.2
938
Normal
0.2
327
Tumor
0.2
697
Tumor
0.2
858
Normal
0.2
924
Normal
0.2
862
Normal
0.2
1032
Normal
0.2
1042
Normal
0.2
515
Tumor
0.2
567
Tumor
0.2
328
Normal
0.2
482
Normal
0.2
956
Normal
0.2
724
Normal
0.2
746
Normal
0.2
353
Tumor
0.2
925
Tumor
0.2
714
Normal
0.2
212
Normal
0.2
982
Normal
0.2
857
Tumor
0.2
824
Normal
0.2
863
Tumor
0.2
493
Tumor
0.2
494
Normal
0.2
964
Normal
0.2
952
Normal
0.2
926
Normal
0.2
412
Normal
0.2
466
Normal
0.2
1043
Tumor
0.2
436
Normal
0.2
742
Normal
0.2
534
Normal
0.2
922
Normal
0.2
727
Tumor
0.2
546
Normal
0.2
477
Tumor
0.2
528
Normal
0.2
1028
Normal
0.2
537
Tumor
0.2
966
Normal
0.1
435
Tumor
0.1
227
Tumor
0.1
864
Normal
0.1
356
Normal
0.1
416
Normal
0.1
1014
Normal
0.1
518
Normal
0.1
912
Normal
0.1
1016
Normal
0.1
516
Normal
0.1
488
Normal
0.1
363
Tumor
0.1
228
Normal
0.1
557
Tumor
0.1
685
Tumor
0.1
473
Tumor
0.1
868
Normal
0.1
472
Normal
0.1
696
Normal
0.1
937
Tumor
0.1
818
Normal
0.1
786
Normal
0.1
141
Tumor
0.1
136
Normal
0.1
1044
Normal
0.1
462
Normal
0.1
351
Tumor
0.1
558
Normal
0.1
721
Tumor
0.1
364
Normal
0.1
147
Tumor
0.1
918
Normal
0.1
816
Normal
0.1
698
Normal
0.1
958
Normal
0.1
284
Normal
0.1
526
Normal
0.1
487
Tumor
0.1
125
Tumor
0.1
451
Tumor
0.1
967
Tumor
0.1
1045
Tumor
0.1
497
Tumor
0.1
852
Normal
0.1
1046
Normal
0.1
743
Tumor
0.1
968
Normal
0.1
415
Tumor
0.1
778
Normal
0.1
455
Tumor
0.1
554
Normal
0.1
414
Normal
0.1
616
Normal
0.1
128
Normal
0.1
873
Tumor
0.1
1013
Tumor
0.1
474
Normal
0.1
617
Tumor
0.1
132
Normal
0.1
261
Tumor
0.1
882
Normal
0.1
411
Tumor
0.1
954
Normal
0.1
571
Tumor
0.1
481
Tumor
0.1
663
Tumor
0.1
866
Normal
0.1
911
Tumor
0.1
861
Tumor
0.1
196
Normal
0.1
456
Normal
0.1
983
Tumor
0.1
716
Normal
0.1
286
Normal
0.1
452
Normal
0.1
563
Tumor
0.1
222
Normal
0.1
977
Tumor
0.1
884
Normal
0.1
464
Normal
0.1
573
Tumor
0.0
517
Tumor
0.0
564
Normal
0.0
432
Normal
0.0
465
Tumor
0.0
362
Normal
0.0
722
Normal
0.0
916
Normal
0.0
851
Tumor
0.0
976
Normal
0.0
572
Normal
0.0
426
Normal
0.0
1041
Tumor
0.0
523
Tumor
0.0
1031
Tumor
0.0
963
Tumor
0.0
224
Normal
0.0
387
Tumor
0.0
865
Tumor
0.0
648
Normal
0.0
867
Tumor
0.0
232
Normal
0.0
262
Normal
0.0
553
Tumor
0.0
914
Normal
0.0
478
Normal
0.0
221
Tumor
0.0
923
Tumor
0.0
422
Normal
0.0
1025
Tumor
0.0
536
Normal
0.0
468
Normal
0.0
258
Normal
0.0
695
Tumor
0.0
142
Normal
0.0
951
Tumor
0.0
298
Normal
0.0
358
Normal
0.0
272
Normal
0.0
131
Tumor
0.0
214
Normal
0.0
686
Normal
0.0
424
Normal
0.0
341
Tumor
0.0
568
Normal
0.0
394
Normal
0.0
368
Normal
0.0
361
Tumor
0.0
498
Normal
0.0
162
Normal
0.0
172
Normal
0.0
471
Tumor
0.0
817
Tumor
0.0
491
Tumor
0.0
218
Normal
0.0
913
Tumor
0.0
376
Normal
0.0
366
Normal
0.0
311
Tumor
0.0
984
Normal
0.0
943
Tumor
0.0
137
Tumor
0.0
111
Normal
0.0
878
Normal
0.0
313
Tumor
0.0
524
Normal
0.0
492
Normal
0.0
715
Tumor
0.0
423
Tumor
0.0
357
Tumor
0.0
148
Normal
0.0
618
Normal
0.0
355
Tumor
0.0
145
Tumor
0.0
1015
Tumor
0.0
431
Tumor
0.0
312
Normal
0.0
538
Normal
0.0
342
Normal
0.0
278
Normal
0.0
915
Tumor
0.0
138
Normal
0.0
186
Normal
0.0
874
Normal
0.0
446
Normal
0.0
662
Normal
0.0
483
Tumor
0.0
297
Tumor
0.0
965
Tumor
0.0
146
Normal
0.0
365
Tumor
0.0
428
Normal
0.0
785
Tumor
0.0
388
Normal
-0.1
223
Tumor
-0.1
628
Normal
-0.1
917
Tumor
-0.1
535
Tumor
-0.1
188
Normal
-0.1
421
Tumor
-0.1
386
Normal
-0.1
285
Tumor
-0.1
391
Tumor
-0.1
666
Normal
-0.1
661
Tumor
-0.1
395
Tumor
-0.1
665
Tumor
-0.1
443
Tumor
-0.1
434
Normal
-0.1
427
Tumor
-0.1
664
Normal
-0.1
647
Tumor
-0.1
114
Normal
-0.1
314
Normal
-0.1
627
Tumor
-0.1
823
Tumor
-0.1
127
Tumor
-0.1
642
Normal
-0.1
267
Tumor
-0.1
113
Tumor
-0.1
957
Tumor
-0.1
126
Normal
-0.1
463
Tumor
-0.1
185
Tumor
-0.1
396
Normal
-0.1
191
Tumor
-0.1
425
Tumor
-0.1
883
Tumor
-0.1
447
Tumor
-0.1
135
Tumor
-0.1
171
Tumor
-0.1
195
Tumor
-0.1
231
Tumor
-0.1
392
Normal
-0.1
384
Normal
-0.1
354
Normal
-0.1
815
Tumor
-0.1
467
Tumor
-0.1
271
Tumor
-0.1
461
Tumor
-0.1
352
Normal
-0.1
445
Tumor
-0.1
343
Tumor
-0.1
192
Normal
-0.1
877
Tumor
-0.1
268
Normal
-0.1
217
Tumor
-0.1
344
Normal
-0.1
813
Tumor
-0.1
367
Tumor
-0.1
921
Tumor
-0.1
385
Tumor
-0.1
433
Tumor
-0.1
112
Tumor
-0.1
211
Tumor
-0.1
413
Tumor
-0.2
187
Tumor
-0.2
375
Tumor
-0.2
744
Normal
-0.2
393
Tumor
-0.2
737
Tumor
-0.2
671
Tumor
-0.2
615
Tumor
-0.2
574
Normal
-0.2
975
Tumor
-0.2
383
Tumor
-0.2
213
Tumor
-0.2
332
Normal
-0.2
277
Tumor
-0.2
636
Normal
-0.2
283
Tumor
-0.2
124
Normal
-0.2
444
Normal
-0.2
641
Tumor
-0.2
161
Tumor
-0.2
545
Tumor
-0.2
814
Normal
-0.3
881
Tumor
-0.3
331
Tumor
-0.3
672
Normal
-0.3
123
Tumor
-0.3
635
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
