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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPM1A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPM1A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1025
Tumor
0.8
1043
Tumor
0.5
912
Normal
0.5
432
Normal
0.5
616
Normal
0.5
484
Normal
0.5
746
Normal
0.4
342
Normal
0.4
698
Normal
0.4
546
Normal
0.4
862
Normal
0.4
777
Tumor
0.4
356
Normal
0.4
186
Normal
0.4
515
Tumor
0.4
738
Normal
0.4
858
Normal
0.4
162
Normal
0.4
412
Normal
0.4
518
Normal
0.4
882
Normal
0.4
436
Normal
0.4
952
Normal
0.4
172
Normal
0.4
1026
Normal
0.4
955
Tumor
0.4
222
Normal
0.4
416
Normal
0.4
452
Normal
0.4
756
Normal
0.4
648
Normal
0.4
742
Normal
0.4
298
Normal
0.3
728
Normal
0.3
516
Normal
0.3
878
Normal
0.3
448
Normal
0.3
488
Normal
0.3
534
Normal
0.3
866
Normal
0.3
664
Normal
0.3
744
Normal
0.3
148
Normal
0.3
824
Normal
0.3
618
Normal
0.3
258
Normal
0.3
314
Normal
0.3
568
Normal
0.3
617
Tumor
0.3
554
Normal
0.3
944
Normal
0.3
1022
Normal
0.3
196
Normal
0.3
132
Normal
0.3
924
Normal
0.3
354
Normal
0.3
446
Normal
0.3
966
Normal
0.3
628
Normal
0.3
481
Tumor
0.3
745
Tumor
0.3
1032
Normal
0.3
431
Tumor
0.3
1042
Normal
0.3
482
Normal
0.3
1046
Normal
0.3
778
Normal
0.3
394
Normal
0.3
636
Normal
0.3
714
Normal
0.3
358
Normal
0.3
818
Normal
0.3
128
Normal
0.3
572
Normal
0.3
864
Normal
0.3
884
Normal
0.3
456
Normal
0.3
816
Normal
0.3
272
Normal
0.3
131
Tumor
0.3
514
Normal
0.3
956
Normal
0.3
938
Normal
0.3
865
Tumor
0.2
696
Normal
0.2
136
Normal
0.2
462
Normal
0.2
1027
Tumor
0.2
642
Normal
0.2
278
Normal
0.2
466
Normal
0.2
494
Normal
0.2
982
Normal
0.2
376
Normal
0.2
364
Normal
0.2
723
Tumor
0.2
558
Normal
0.2
472
Normal
0.2
142
Normal
0.2
914
Normal
0.2
426
Normal
0.2
981
Tumor
0.2
388
Normal
0.2
755
Tumor
0.2
328
Normal
0.2
564
Normal
0.2
1014
Normal
0.2
232
Normal
0.2
474
Normal
0.2
526
Normal
0.2
666
Normal
0.2
422
Normal
0.2
362
Normal
0.2
332
Normal
0.2
513
Tumor
0.2
366
Normal
0.2
146
Normal
0.2
1031
Tumor
0.2
392
Normal
0.2
874
Normal
0.2
464
Normal
0.2
695
Tumor
0.2
926
Normal
0.2
786
Normal
0.2
662
Normal
0.2
863
Tumor
0.2
384
Normal
0.2
954
Normal
0.2
1016
Normal
0.2
138
Normal
0.2
1044
Normal
0.1
214
Normal
0.1
984
Normal
0.1
958
Normal
0.1
228
Normal
0.1
212
Normal
0.1
262
Normal
0.1
715
Tumor
0.1
523
Tumor
0.1
135
Tumor
0.1
424
Normal
0.1
445
Tumor
0.1
716
Normal
0.1
785
Tumor
0.1
114
Normal
0.1
386
Normal
0.1
277
Tumor
0.1
868
Normal
0.1
312
Normal
0.1
528
Normal
0.1
978
Normal
0.1
574
Normal
0.1
527
Tumor
0.1
976
Normal
0.1
368
Normal
0.1
852
Normal
0.1
922
Normal
0.1
722
Normal
0.1
286
Normal
0.1
964
Normal
0.1
111
Normal
0.1
737
Tumor
0.1
414
Normal
0.1
553
Tumor
0.1
218
Normal
0.1
968
Normal
0.1
615
Tumor
0.1
221
Tumor
0.1
188
Normal
0.1
538
Normal
0.1
313
Tumor
0.1
492
Normal
0.1
1028
Normal
0.1
227
Tumor
0.1
468
Normal
0.1
627
Tumor
0.1
271
Tumor
0.1
957
Tumor
0.1
918
Normal
0.1
352
Normal
0.1
353
Tumor
0.1
268
Normal
0.1
473
Tumor
0.0
363
Tumor
0.0
428
Normal
0.0
396
Normal
0.0
727
Tumor
0.0
857
Tumor
0.0
365
Tumor
0.0
498
Normal
0.0
873
Tumor
0.0
344
Normal
0.0
478
Normal
0.0
415
Tumor
0.0
635
Tumor
0.0
911
Tumor
0.0
477
Tumor
0.0
461
Tumor
0.0
137
Tumor
0.0
444
Normal
0.0
261
Tumor
0.0
524
Normal
0.0
867
Tumor
0.0
434
Normal
0.0
124
Normal
0.0
141
Tumor
0.0
284
Normal
-0.1
686
Normal
-0.1
685
Tumor
-0.1
357
Tumor
-0.1
192
Normal
-0.1
355
Tumor
-0.1
663
Tumor
-0.1
533
Tumor
-0.1
975
Tumor
-0.1
497
Tumor
-0.1
741
Tumor
-0.1
641
Tumor
-0.1
257
Tumor
-0.1
672
Normal
-0.1
823
Tumor
-0.1
435
Tumor
-0.1
536
Normal
-0.1
147
Tumor
-0.1
493
Tumor
-0.1
145
Tumor
-0.1
471
Tumor
-0.1
224
Normal
-0.1
393
Tumor
-0.1
447
Tumor
-0.1
916
Normal
-0.1
1045
Tumor
-0.1
743
Tumor
-0.1
967
Tumor
-0.1
361
Tumor
-0.1
126
Normal
-0.1
721
Tumor
-0.2
861
Tumor
-0.2
563
Tumor
-0.2
815
Tumor
-0.2
443
Tumor
-0.2
963
Tumor
-0.2
195
Tumor
-0.2
697
Tumor
-0.2
433
Tumor
-0.2
411
Tumor
-0.2
223
Tumor
-0.2
557
Tumor
-0.2
1041
Tumor
-0.2
217
Tumor
-0.2
977
Tumor
-0.2
127
Tumor
-0.2
455
Tumor
-0.2
413
Tumor
-0.2
112
Tumor
-0.2
267
Tumor
-0.2
423
Tumor
-0.2
881
Tumor
-0.2
943
Tumor
-0.2
185
Tumor
-0.2
383
Tumor
-0.2
921
Tumor
-0.3
285
Tumor
-0.3
463
Tumor
-0.3
343
Tumor
-0.3
297
Tumor
-0.3
877
Tumor
-0.3
813
Tumor
-0.3
517
Tumor
-0.3
953
Tumor
-0.3
467
Tumor
-0.3
213
Tumor
-0.3
713
Tumor
-0.3
571
Tumor
-0.3
191
Tumor
-0.3
913
Tumor
-0.3
487
Tumor
-0.4
161
Tumor
-0.4
231
Tumor
-0.4
451
Tumor
-0.4
545
Tumor
-0.4
915
Tumor
-0.4
311
Tumor
-0.4
327
Tumor
-0.4
665
Tumor
-0.4
851
Tumor
-0.4
917
Tumor
-0.4
483
Tumor
-0.4
1015
Tumor
-0.4
341
Tumor
-0.4
814
Normal
-0.4
817
Tumor
-0.4
187
Tumor
-0.4
113
Tumor
-0.4
421
Tumor
-0.5
375
Tumor
-0.5
491
Tumor
-0.5
937
Tumor
-0.5
425
Tumor
-0.5
883
Tumor
-0.5
647
Tumor
-0.5
465
Tumor
-0.5
211
Tumor
-0.5
535
Tumor
-0.5
1021
Tumor
-0.6
525
Tumor
-0.6
1013
Tumor
-0.6
125
Tumor
-0.6
171
Tumor
-0.6
923
Tumor
-0.6
661
Tumor
-0.6
331
Tumor
-0.6
537
Tumor
-0.6
367
Tumor
-0.6
283
Tumor
-0.7
387
Tumor
-0.7
427
Tumor
-0.7
385
Tumor
-0.7
123
Tumor
-0.7
671
Tumor
-0.7
925
Tumor
-0.7
983
Tumor
-0.7
724
Normal
-0.7
567
Tumor
-0.7
391
Tumor
-0.8
965
Tumor
-0.8
351
Tumor
-0.8
573
Tumor
-0.9
951
Tumor
-0.9
395
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
