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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CNIH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
72.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
288.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
204.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
171.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
165.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
162.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
154.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
150.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
147.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
147.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
146.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
144.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
141.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
141.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
140.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
139.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
139.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
138.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
136.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
133.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
132.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
132.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
129.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
128.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
126.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
124.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
123.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
122.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
120.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
119.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
116.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
116.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
116.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
115.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
115.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
114.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
113.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
112.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
112.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
111.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
110.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
110.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
110.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
110.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
110.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
109.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
109.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
109.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
108.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
107.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
107.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
106.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
106.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
106.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
104.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
104.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
104.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
103.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
103.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
102.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
102.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
101.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
100.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
100.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
100.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
99.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
99.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
99.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
99.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
98.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
96.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
96.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
96.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
96.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
96.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
95.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
95.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
95.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
95.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
94.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
94.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
94.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
94.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
94.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
94.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
93.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
92.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
92.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
92.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
91.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
90.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
90.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
89.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
89.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
89.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
88.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
88.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
87.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
87.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
87.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
87.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
87.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
87.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
87.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
87.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
85.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
85.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
85.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
85.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
83.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
83.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
83.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
83.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
83.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
83.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
82.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
82.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
82.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
82.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
81.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
81.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
81.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
81.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
81.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
81.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
81.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
81.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
81.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
80.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
80.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
80.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
80.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
80.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
79.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
79.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
79.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
79.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
79.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
78.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
78.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
78.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
77.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
77.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
77.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
76.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
76.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
76.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
76.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
75.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
75.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
74.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
74.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
73.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
73.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
73.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
73.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
72.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
72.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
72.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
72.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
72.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
71.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
71.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
70.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
70.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
70.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
70.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
70.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
69.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
69.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
69.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
69.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
68.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
68.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
67.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
67.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
66.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
66.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
66.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
65.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
65.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
64.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
64.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
63.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
63.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
63.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
63.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
63.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
62.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
62.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
62.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
61.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
61.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
61.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
61.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
60.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
60.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
60.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
58.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
58.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
57.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
57.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
56.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
56.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
56.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
56.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
56.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
56.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
55.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
55.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
55.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
55.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
54.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
54.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
53.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
52.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
52.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
52.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
52.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
51.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
51.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
50.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
49.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
49.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
49.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
49.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
48.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
47.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
46.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
45.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
43.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
43.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
42.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
42.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
41.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
41.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
41.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
41.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
40.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
40.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
38.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
37.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
36.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
31.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.0
1027
Tumor
1.0
755
Tumor
1.0
963
Tumor
1.0
477
Tumor
0.9
727
Tumor
0.9
445
Tumor
0.9
518
Normal
0.7
738
Normal
0.6
131
Tumor
0.6
261
Tumor
0.5
554
Normal
0.5
741
Tumor
0.5
474
Normal
0.5
728
Normal
0.5
538
Normal
0.5
448
Normal
0.5
492
Normal
0.5
695
Tumor
0.5
966
Normal
0.5
363
Tumor
0.4
411
Tumor
0.4
137
Tumor
0.4
227
Tumor
0.4
744
Normal
0.4
277
Tumor
0.4
357
Tumor
0.4
471
Tumor
0.4
355
Tumor
0.4
924
Normal
0.4
956
Normal
0.3
516
Normal
0.3
873
Tumor
0.3
778
Normal
0.3
533
Tumor
0.3
546
Normal
0.3
955
Tumor
0.3
523
Tumor
0.3
746
Normal
0.3
494
Normal
0.3
128
Normal
0.3
743
Tumor
0.2
412
Normal
0.2
257
Tumor
0.2
742
Normal
0.2
384
Normal
0.2
1026
Normal
0.2
313
Tumor
0.2
114
Normal
0.2
952
Normal
0.2
527
Tumor
0.2
867
Tumor
0.2
922
Normal
0.2
278
Normal
0.2
362
Normal
0.2
534
Normal
0.2
488
Normal
0.2
452
Normal
0.2
376
Normal
0.2
697
Tumor
0.2
957
Tumor
0.2
515
Tumor
0.2
698
Normal
0.2
553
Tumor
0.2
228
Normal
0.1
816
Normal
0.1
537
Tumor
0.1
455
Tumor
0.1
1031
Tumor
0.1
878
Normal
0.1
365
Tumor
0.1
484
Normal
0.1
918
Normal
0.1
914
Normal
0.1
124
Normal
0.1
737
Tumor
0.1
857
Tumor
0.1
976
Normal
0.1
135
Tumor
0.1
223
Tumor
0.1
528
Normal
0.1
864
Normal
0.0
111
Normal
0.0
368
Normal
0.0
968
Normal
0.0
813
Tumor
0.0
874
Normal
0.0
212
Normal
0.0
696
Normal
0.0
473
Tumor
0.0
366
Normal
0.0
925
Tumor
0.0
1028
Normal
0.0
314
Normal
0.0
526
Normal
0.0
981
Tumor
0.0
497
Tumor
0.0
911
Tumor
0.0
513
Tumor
0.0
524
Normal
0.0
435
Tumor
0.0
1025
Tumor
0.0
777
Tumor
0.0
923
Tumor
0.0
866
Normal
-0.1
967
Tumor
-0.1
517
Tumor
-0.1
545
Tumor
-0.1
865
Tumor
-0.1
1015
Tumor
-0.1
685
Tumor
-0.1
915
Tumor
-0.1
1041
Tumor
-0.1
785
Tumor
-0.1
944
Normal
-0.1
286
Normal
-0.1
715
Tumor
-0.1
416
Normal
-0.1
723
Tumor
-0.1
312
Normal
-0.1
481
Tumor
-0.1
361
Tumor
-0.1
383
Tumor
-0.1
975
Tumor
-0.1
881
Tumor
-0.1
472
Normal
-0.1
185
Tumor
-0.2
953
Tumor
-0.2
535
Tumor
-0.2
284
Normal
-0.2
422
Normal
-0.2
926
Normal
-0.2
964
Normal
-0.2
415
Tumor
-0.2
536
Normal
-0.2
424
Normal
-0.2
375
Tumor
-0.2
271
Tumor
-0.2
462
Normal
-0.2
332
Normal
-0.2
1044
Normal
-0.2
1045
Tumor
-0.2
283
Tumor
-0.2
141
Tumor
-0.2
272
Normal
-0.2
1021
Tumor
-0.2
461
Tumor
-0.2
367
Tumor
-0.2
916
Normal
-0.2
862
Normal
-0.2
491
Tumor
-0.2
861
Tumor
-0.3
478
Normal
-0.3
714
Normal
-0.3
958
Normal
-0.3
514
Normal
-0.3
426
Normal
-0.3
965
Tumor
-0.3
977
Tumor
-0.3
1013
Tumor
-0.3
635
Tumor
-0.3
913
Tumor
-0.3
395
Tumor
-0.3
328
Normal
-0.3
713
Tumor
-0.3
817
Tumor
-0.3
285
Tumor
-0.3
493
Tumor
-0.3
298
Normal
-0.3
262
Normal
-0.3
447
Tumor
-0.3
642
Normal
-0.3
423
Tumor
-0.3
466
Normal
-0.3
428
Normal
-0.3
615
Tumor
-0.3
858
Normal
-0.4
721
Tumor
-0.4
297
Tumor
-0.4
636
Normal
-0.4
756
Normal
-0.4
342
Normal
-0.4
483
Tumor
-0.4
267
Tumor
-0.4
258
Normal
-0.4
954
Normal
-0.4
686
Normal
-0.4
627
Tumor
-0.4
938
Normal
-0.4
356
Normal
-0.4
123
Tumor
-0.4
851
Tumor
-0.4
852
Normal
-0.4
126
Normal
-0.4
113
Tumor
-0.4
943
Tumor
-0.4
498
Normal
-0.4
147
Tumor
-0.4
331
Tumor
-0.4
982
Normal
-0.4
618
Normal
-0.4
617
Tumor
-0.4
172
Normal
-0.4
917
Tumor
-0.4
327
Tumor
-0.5
1042
Normal
-0.5
425
Tumor
-0.5
951
Tumor
-0.5
186
Normal
-0.5
525
Tumor
-0.5
414
Normal
-0.5
392
Normal
-0.5
482
Normal
-0.5
388
Normal
-0.5
161
Tumor
-0.5
1022
Normal
-0.5
463
Tumor
-0.5
132
Normal
-0.5
224
Normal
-0.5
487
Tumor
-0.5
364
Normal
-0.5
211
Tumor
-0.5
112
Tumor
-0.5
148
Normal
-0.5
1016
Normal
-0.5
136
Normal
-0.5
162
Normal
-0.5
138
Normal
-0.5
716
Normal
-0.5
883
Tumor
-0.5
433
Tumor
-0.6
387
Tumor
-0.6
464
Normal
-0.6
722
Normal
-0.6
142
Normal
-0.6
786
Normal
-0.6
863
Tumor
-0.6
393
Tumor
-0.6
396
Normal
-0.6
557
Tumor
-0.6
436
Normal
-0.6
427
Tumor
-0.6
385
Tumor
-0.6
937
Tumor
-0.6
882
Normal
-0.6
394
Normal
-0.6
868
Normal
-0.6
1032
Normal
-0.6
823
Tumor
-0.6
431
Tumor
-0.6
465
Tumor
-0.6
188
Normal
-0.6
616
Normal
-0.6
824
Normal
-0.7
232
Normal
-0.7
456
Normal
-0.7
724
Normal
-0.7
386
Normal
-0.7
877
Tumor
-0.7
187
Tumor
-0.7
344
Normal
-0.7
421
Tumor
-0.7
814
Normal
-0.7
921
Tumor
-0.7
413
Tumor
-0.8
171
Tumor
-0.8
358
Normal
-0.8
815
Tumor
-0.8
268
Normal
-0.8
1014
Normal
-0.8
125
Tumor
-0.8
641
Tumor
-0.8
352
Normal
-0.9
351
Tumor
-0.9
443
Tumor
-0.9
468
Normal
-0.9
231
Tumor
-0.9
214
Normal
-0.9
434
Normal
-0.9
628
Normal
-0.9
446
Normal
-1.0
146
Normal
-1.0
451
Tumor
-1.0
145
Tumor
-1.0
567
Tumor
-1.0
353
Tumor
-1.0
341
Tumor
-1.0
127
Tumor
-1.0
343
Tumor
-1.1
984
Normal
-1.1
818
Normal
-1.1
354
Normal
-1.1
467
Tumor
-1.1
391
Tumor
-1.1
432
Normal
-1.2
444
Normal
-1.2
311
Tumor
-1.2
222
Normal
-1.2
574
Normal
-1.3
196
Normal
-1.3
661
Tumor
-1.3
662
Normal
-1.3
983
Tumor
-1.3
571
Tumor
-1.3
647
Tumor
-1.3
664
Normal
-1.4
218
Normal
-1.4
217
Tumor
-1.4
672
Normal
-1.4
884
Normal
-1.5
558
Normal
-1.5
572
Normal
-1.5
663
Tumor
-1.5
568
Normal
-1.5
912
Normal
-1.6
213
Tumor
-1.6
192
Normal
-1.6
564
Normal
-1.6
195
Tumor
-1.7
191
Tumor
-1.8
978
Normal
-1.8
573
Tumor
-1.8
563
Tumor
-1.8
665
Tumor
-1.9
648
Normal
-1.9
221
Tumor
-2.2
671
Tumor
-2.4
1043
Tumor
-2.5
1046
Normal
-3.0
666
Normal
-3.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
