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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
104.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
101.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
98.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
77.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
76.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
71.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
68.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
68.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
65.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
64.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
64.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
64.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
62.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
62.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
61.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
59.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
58.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
57.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
57.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
56.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
55.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
55.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
54.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
53.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
53.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
53.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
52.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
51.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
51.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
51.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
50.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
50.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
50.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
47.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
47.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
46.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
46.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
45.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
43.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
43.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
43.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
42.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
40.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
40.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
38.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
38.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
38.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
36.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
36.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
34.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
34.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
31.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
31.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
30.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
29.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
23.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.1
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
104.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
98.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
94.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
86.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
84.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
81.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
74.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
73.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
72.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
66.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
65.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
65.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
65.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
63.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
63.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
62.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
61.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
61.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
61.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
60.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
60.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
60.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
59.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
59.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
57.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
57.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
56.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
56.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
55.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
55.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
54.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
53.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
53.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
53.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
53.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
53.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
53.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
52.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
52.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
52.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
51.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
51.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
51.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
51.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
50.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
50.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
49.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
49.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
48.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
48.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
48.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
48.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
47.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
47.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
47.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
46.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
45.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
45.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
45.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
44.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
44.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
43.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
43.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
42.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
42.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
42.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
41.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
40.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
40.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
40.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
39.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
37.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
33.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
33.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
31.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
24.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
0.4
955
Tumor
0.3
865
Tumor
0.3
1027
Tumor
0.3
777
Tumor
0.3
436
Normal
0.3
313
Tumor
0.3
125
Tumor
0.3
661
Tumor
0.3
533
Tumor
0.3
257
Tumor
0.3
432
Normal
0.3
147
Tumor
0.2
353
Tumor
0.2
741
Tumor
0.2
445
Tumor
0.2
557
Tumor
0.2
395
Tumor
0.2
1022
Normal
0.2
1026
Normal
0.2
466
Normal
0.2
358
Normal
0.2
455
Tumor
0.2
411
Tumor
0.2
446
Normal
0.2
728
Normal
0.2
698
Normal
0.2
132
Normal
0.2
451
Tumor
0.2
145
Tumor
0.2
221
Tumor
0.2
484
Normal
0.2
361
Tumor
0.2
1025
Tumor
0.2
558
Normal
0.2
435
Tumor
0.2
464
Normal
0.2
136
Normal
0.2
738
Normal
0.2
527
Tumor
0.2
141
Tumor
0.2
515
Tumor
0.2
172
Normal
0.2
456
Normal
0.2
981
Tumor
0.1
746
Normal
0.1
232
Normal
0.1
663
Tumor
0.1
443
Tumor
0.1
452
Normal
0.1
448
Normal
0.1
351
Tumor
0.1
755
Tumor
0.1
713
Tumor
0.1
186
Normal
0.1
516
Normal
0.1
434
Normal
0.1
944
Normal
0.1
196
Normal
0.1
648
Normal
0.1
745
Tumor
0.1
222
Normal
0.1
227
Tumor
0.1
272
Normal
0.1
514
Normal
0.1
387
Tumor
0.1
286
Normal
0.1
342
Normal
0.1
414
Normal
0.1
742
Normal
0.1
567
Tumor
0.1
162
Normal
0.1
357
Tumor
0.1
327
Tumor
0.1
468
Normal
0.1
618
Normal
0.1
444
Normal
0.1
573
Tumor
0.1
564
Normal
0.1
1015
Tumor
0.1
1013
Tumor
0.1
482
Normal
0.1
298
Normal
0.1
518
Normal
0.1
724
Normal
0.1
262
Normal
0.1
953
Tumor
0.1
494
Normal
0.1
956
Normal
0.1
924
Normal
0.1
864
Normal
0.1
343
Tumor
0.1
137
Tumor
0.1
376
Normal
0.1
258
Normal
0.1
431
Tumor
0.1
572
Normal
0.1
135
Tumor
0.1
534
Normal
0.1
952
Normal
0.1
278
Normal
0.1
362
Normal
0.1
487
Tumor
0.1
743
Tumor
0.1
113
Tumor
0.1
462
Normal
0.1
394
Normal
0.1
148
Normal
0.1
314
Normal
0.1
568
Normal
0.1
666
Normal
0.1
391
Tumor
0.1
426
Normal
0.1
112
Tumor
0.1
563
Tumor
0.1
212
Normal
0.1
363
Tumor
0.1
714
Normal
0.1
267
Tumor
0.1
685
Tumor
0.1
528
Normal
0.1
617
Tumor
0.1
214
Normal
0.1
662
Normal
0.1
1016
Normal
0.1
1042
Normal
0.1
312
Normal
0.1
723
Tumor
0.1
627
Tumor
0.1
873
Tumor
0.1
386
Normal
0.1
472
Normal
0.1
424
Normal
0.1
862
Normal
0.1
368
Normal
0.1
756
Normal
0.1
328
Normal
0.1
922
Normal
0.1
488
Normal
0.1
526
Normal
0.1
366
Normal
0.1
422
Normal
0.1
415
Tumor
0.1
727
Tumor
0.0
138
Normal
0.0
354
Normal
0.0
665
Tumor
0.0
146
Normal
0.0
1046
Normal
0.0
664
Normal
0.0
285
Tumor
0.0
344
Normal
0.0
914
Normal
0.0
1043
Tumor
0.0
938
Normal
0.0
824
Normal
0.0
332
Normal
0.0
866
Normal
0.0
228
Normal
0.0
188
Normal
0.0
1021
Tumor
0.0
815
Tumor
0.0
123
Tumor
0.0
1028
Normal
0.0
477
Tumor
0.0
416
Normal
0.0
261
Tumor
0.0
421
Tumor
0.0
1031
Tumor
0.0
365
Tumor
0.0
616
Normal
0.0
671
Tumor
0.0
218
Normal
0.0
356
Normal
0.0
423
Tumor
0.0
277
Tumor
0.0
517
Tumor
0.0
868
Normal
0.0
571
Tumor
0.0
925
Tumor
0.0
525
Tumor
0.0
858
Normal
0.0
128
Normal
0.0
114
Normal
0.0
642
Normal
0.0
878
Normal
0.0
1032
Normal
0.0
428
Normal
0.0
271
Tumor
0.0
185
Tumor
0.0
111
Normal
0.0
497
Tumor
0.0
982
Normal
0.0
1044
Normal
0.0
786
Normal
0.0
951
Tumor
0.0
412
Normal
0.0
297
Tumor
0.0
284
Normal
0.0
195
Tumor
0.0
966
Normal
0.0
311
Tumor
0.0
474
Normal
0.0
912
Normal
0.0
465
Tumor
0.0
863
Tumor
0.0
636
Normal
0.0
696
Normal
0.0
463
Tumor
0.0
628
Normal
0.0
1045
Tumor
0.0
851
Tumor
0.0
721
Tumor
0.0
352
Normal
0.0
778
Normal
0.0
142
Normal
0.0
615
Tumor
0.0
813
Tumor
0.0
268
Normal
0.0
383
Tumor
0.0
816
Normal
0.0
554
Normal
0.0
491
Tumor
0.0
223
Tumor
0.0
744
Normal
0.0
882
Normal
0.0
217
Tumor
0.0
433
Tumor
0.0
722
Normal
0.0
968
Normal
0.0
861
Tumor
0.0
911
Tumor
0.0
918
Normal
0.0
964
Normal
0.0
231
Tumor
0.0
493
Tumor
0.0
388
Normal
0.0
978
Normal
0.0
546
Normal
0.0
187
Tumor
0.0
392
Normal
0.0
473
Tumor
0.0
427
Tumor
0.0
224
Normal
0.0
874
Normal
0.0
355
Tumor
0.0
926
Normal
0.0
124
Normal
0.0
467
Tumor
0.0
635
Tumor
0.0
857
Tumor
0.0
481
Tumor
0.0
697
Tumor
0.0
384
Normal
-0.1
877
Tumor
-0.1
574
Normal
-0.1
126
Normal
-0.1
537
Tumor
-0.1
852
Normal
-0.1
375
Tumor
-0.1
393
Tumor
-0.1
883
Tumor
-0.1
396
Normal
-0.1
977
Tumor
-0.1
884
Normal
-0.1
213
Tumor
-0.1
524
Normal
-0.1
161
Tumor
-0.1
867
Tumor
-0.1
695
Tumor
-0.1
471
Tumor
-0.1
716
Normal
-0.1
976
Normal
-0.1
958
Normal
-0.1
461
Tumor
-0.1
385
Tumor
-0.1
913
Tumor
-0.1
191
Tumor
-0.1
814
Normal
-0.1
413
Tumor
-0.1
647
Tumor
-0.1
523
Tumor
-0.1
983
Tumor
-0.1
498
Normal
-0.1
341
Tumor
-0.1
967
Tumor
-0.1
818
Normal
-0.1
425
Tumor
-0.1
916
Normal
-0.1
127
Tumor
-0.1
1014
Normal
-0.1
131
Tumor
-0.1
492
Normal
-0.1
364
Normal
-0.1
737
Tumor
-0.1
478
Normal
-0.1
686
Normal
-0.1
192
Normal
-0.1
367
Tumor
-0.1
1041
Tumor
-0.1
553
Tumor
-0.1
937
Tumor
-0.2
881
Tumor
-0.2
171
Tumor
-0.2
283
Tumor
-0.2
211
Tumor
-0.2
538
Normal
-0.2
672
Normal
-0.2
943
Tumor
-0.2
536
Normal
-0.2
954
Normal
-0.2
915
Tumor
-0.2
923
Tumor
-0.2
331
Tumor
-0.2
447
Tumor
-0.2
963
Tumor
-0.2
715
Tumor
-0.2
957
Tumor
-0.2
641
Tumor
-0.2
984
Normal
-0.2
823
Tumor
-0.2
785
Tumor
-0.2
483
Tumor
-0.2
917
Tumor
-0.3
921
Tumor
-0.3
535
Tumor
-0.3
817
Tumor
-0.3
965
Tumor
-0.3
545
Tumor
-0.3
975
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
