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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDR39U1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
71.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
61.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
56.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
55.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
55.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
52.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
52.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
50.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
49.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
45.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
43.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
42.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
39.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
38.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
37.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
36.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
36.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
34.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
31.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
30.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
29.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
28.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
21.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
19.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDR39U1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.0
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
116.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
110.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
86.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
85.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
82.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
80.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
79.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
77.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
76.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
75.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
74.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
70.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
70.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
70.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
67.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
66.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
63.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
62.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
61.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
61.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
60.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
59.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
58.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
57.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
55.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
55.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
53.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
52.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
51.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
51.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
51.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
47.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
47.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
46.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
46.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
44.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
42.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
41.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
40.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
39.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.3
695
Tumor
1.3
571
Tumor
1.2
741
Tumor
1.0
135
Tumor
1.0
745
Tumor
0.9
981
Tumor
0.8
445
Tumor
0.7
452
Normal
0.7
227
Tumor
0.7
261
Tumor
0.7
636
Normal
0.7
426
Normal
0.7
513
Tumor
0.7
128
Normal
0.7
423
Tumor
0.7
127
Tumor
0.7
635
Tumor
0.7
232
Normal
0.6
554
Normal
0.6
431
Tumor
0.6
468
Normal
0.6
785
Tumor
0.6
344
Normal
0.6
361
Tumor
0.6
558
Normal
0.6
867
Tumor
0.6
352
Normal
0.6
376
Normal
0.6
572
Normal
0.6
563
Tumor
0.6
451
Tumor
0.5
534
Normal
0.5
564
Normal
0.5
314
Normal
0.5
278
Normal
0.5
186
Normal
0.5
231
Tumor
0.5
473
Tumor
0.5
298
Normal
0.5
615
Tumor
0.5
172
Normal
0.5
436
Normal
0.5
714
Normal
0.5
421
Tumor
0.5
366
Normal
0.5
722
Normal
0.5
696
Normal
0.5
1046
Normal
0.5
424
Normal
0.5
466
Normal
0.5
944
Normal
0.5
368
Normal
0.5
111
Normal
0.5
1022
Normal
0.5
786
Normal
0.5
422
Normal
0.5
414
Normal
0.5
446
Normal
0.5
955
Tumor
0.4
723
Tumor
0.4
477
Tumor
0.4
911
Tumor
0.4
915
Tumor
0.4
428
Normal
0.4
214
Normal
0.4
557
Tumor
0.4
756
Normal
0.4
162
Normal
0.4
526
Normal
0.4
954
Normal
0.4
487
Tumor
0.4
883
Tumor
0.4
528
Normal
0.4
538
Normal
0.4
721
Tumor
0.4
365
Tumor
0.4
882
Normal
0.4
873
Tumor
0.4
114
Normal
0.4
354
Normal
0.4
728
Normal
0.4
648
Normal
0.4
126
Normal
0.3
142
Normal
0.3
464
Normal
0.3
383
Tumor
0.3
483
Tumor
0.3
984
Normal
0.3
746
Normal
0.3
357
Tumor
0.3
228
Normal
0.3
222
Normal
0.3
1014
Normal
0.3
1026
Normal
0.3
462
Normal
0.3
878
Normal
0.3
715
Tumor
0.3
161
Tumor
0.3
342
Normal
0.3
384
Normal
0.3
524
Normal
0.3
267
Tumor
0.3
514
Normal
0.3
568
Normal
0.3
277
Tumor
0.3
816
Normal
0.3
862
Normal
0.3
1041
Tumor
0.3
482
Normal
0.3
412
Normal
0.3
884
Normal
0.3
362
Normal
0.3
411
Tumor
0.3
818
Normal
0.3
481
Tumor
0.3
868
Normal
0.3
364
Normal
0.3
858
Normal
0.2
353
Tumor
0.2
924
Normal
0.2
356
Normal
0.2
268
Normal
0.2
956
Normal
0.2
262
Normal
0.2
148
Normal
0.2
852
Normal
0.2
713
Tumor
0.2
755
Tumor
0.2
224
Normal
0.2
312
Normal
0.2
113
Tumor
0.2
742
Normal
0.2
332
Normal
0.2
918
Normal
0.2
982
Normal
0.2
396
Normal
0.2
313
Tumor
0.2
416
Normal
0.2
124
Normal
0.2
662
Normal
0.2
145
Tumor
0.2
415
Tumor
0.2
358
Normal
0.2
1044
Normal
0.2
716
Normal
0.2
952
Normal
0.2
1045
Tumor
0.2
964
Normal
0.2
443
Tumor
0.2
188
Normal
0.2
137
Tumor
0.2
861
Tumor
0.1
1025
Tumor
0.1
286
Normal
0.1
388
Normal
0.1
212
Normal
0.1
478
Normal
0.1
448
Normal
0.1
824
Normal
0.1
518
Normal
0.1
553
Tumor
0.1
132
Normal
0.1
191
Tumor
0.1
666
Normal
0.1
823
Tumor
0.1
857
Tumor
0.1
136
Normal
0.1
698
Normal
0.1
218
Normal
0.1
813
Tumor
0.1
738
Normal
0.1
642
Normal
0.1
185
Tumor
0.1
363
Tumor
0.1
392
Normal
0.1
432
Normal
0.1
196
Normal
0.1
968
Normal
0.1
778
Normal
0.0
665
Tumor
0.0
488
Normal
0.0
912
Normal
0.0
258
Normal
0.0
616
Normal
0.0
221
Tumor
0.0
467
Tumor
0.0
494
Normal
0.0
474
Normal
0.0
923
Tumor
0.0
744
Normal
0.0
284
Normal
0.0
866
Normal
0.0
456
Normal
0.0
492
Normal
0.0
484
Normal
0.0
1032
Normal
0.0
427
Tumor
0.0
874
Normal
0.0
978
Normal
0.0
192
Normal
0.0
394
Normal
0.0
465
Tumor
-0.1
297
Tumor
-0.1
533
Tumor
-0.1
814
Normal
-0.1
922
Normal
-0.1
815
Tumor
-0.1
138
Normal
-0.1
463
Tumor
-0.1
958
Normal
-0.1
498
Normal
-0.1
863
Tumor
-0.1
187
Tumor
-0.1
672
Normal
-0.1
1028
Normal
-0.1
864
Normal
-0.1
967
Tumor
-0.1
472
Normal
-0.1
574
Normal
-0.1
461
Tumor
-0.1
393
Tumor
-0.1
217
Tumor
-0.1
914
Normal
-0.1
355
Tumor
-0.2
272
Normal
-0.2
471
Tumor
-0.2
966
Normal
-0.2
1043
Tumor
-0.2
516
Normal
-0.2
141
Tumor
-0.2
1027
Tumor
-0.2
213
Tumor
-0.2
195
Tumor
-0.2
1042
Normal
-0.2
444
Normal
-0.2
435
Tumor
-0.2
777
Tumor
-0.2
171
Tumor
-0.2
976
Normal
-0.2
433
Tumor
-0.3
527
Tumor
-0.3
1013
Tumor
-0.3
328
Normal
-0.3
434
Normal
-0.3
257
Tumor
-0.3
877
Tumor
-0.3
851
Tumor
-0.3
727
Tumor
-0.3
951
Tumor
-0.3
375
Tumor
-0.3
387
Tumor
-0.3
146
Normal
-0.3
367
Tumor
-0.3
1016
Normal
-0.3
926
Normal
-0.3
647
Tumor
-0.3
491
Tumor
-0.3
953
Tumor
-0.3
523
Tumor
-0.3
627
Tumor
-0.3
641
Tumor
-0.4
916
Normal
-0.4
223
Tumor
-0.4
413
Tumor
-0.4
125
Tumor
-0.4
685
Tumor
-0.4
977
Tumor
-0.4
1031
Tumor
-0.4
517
Tumor
-0.4
515
Tumor
-0.4
1015
Tumor
-0.5
123
Tumor
-0.5
536
Normal
-0.5
285
Tumor
-0.5
525
Tumor
-0.5
271
Tumor
-0.5
697
Tumor
-0.5
546
Normal
-0.5
965
Tumor
-0.5
963
Tumor
-0.6
957
Tumor
-0.6
737
Tumor
-0.6
865
Tumor
-0.6
881
Tumor
-0.6
1021
Tumor
-0.6
331
Tumor
-0.6
327
Tumor
-0.6
311
Tumor
-0.6
943
Tumor
-0.6
913
Tumor
-0.6
938
Normal
-0.6
395
Tumor
-0.7
618
Normal
-0.7
455
Tumor
-0.7
493
Tumor
-0.7
343
Tumor
-0.7
497
Tumor
-0.7
425
Tumor
-0.7
925
Tumor
-0.8
975
Tumor
-0.8
447
Tumor
-0.8
351
Tumor
-0.8
341
Tumor
-0.8
983
Tumor
-0.8
147
Tumor
-0.8
628
Normal
-0.9
661
Tumor
-0.9
664
Normal
-0.9
567
Tumor
-0.9
917
Tumor
-0.9
386
Normal
-0.9
743
Tumor
-0.9
537
Tumor
-1.0
131
Tumor
-1.0
663
Tumor
-1.0
211
Tumor
-1.0
724
Normal
-1.0
391
Tumor
-1.0
817
Tumor
-1.1
283
Tumor
-1.1
921
Tumor
-1.1
686
Normal
-1.1
535
Tumor
-1.1
385
Tumor
-1.3
671
Tumor
-1.4
573
Tumor
-1.4
937
Tumor
-1.4
617
Tumor
-1.6
545
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
