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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DESI1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
68.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
60.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
51.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
43.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
38.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
38.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
35.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
30.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
29.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
223
Tumor
1.6
123
Tumor
1.3
533
Tumor
1.2
913
Tumor
1.2
567
Tumor
1.2
745
Tumor
1.0
513
Tumor
0.9
443
Tumor
0.8
113
Tumor
0.7
635
Tumor
0.7
724
Normal
0.7
1041
Tumor
0.7
573
Tumor
0.7
925
Tumor
0.6
341
Tumor
0.6
147
Tumor
0.6
171
Tumor
0.6
127
Tumor
0.6
126
Normal
0.6
114
Normal
0.6
685
Tumor
0.6
477
Tumor
0.6
327
Tumor
0.6
128
Normal
0.5
161
Tumor
0.5
267
Tumor
0.5
851
Tumor
0.5
271
Tumor
0.5
451
Tumor
0.5
111
Normal
0.5
361
Tumor
0.5
713
Tumor
0.5
231
Tumor
0.4
647
Tumor
0.4
815
Tumor
0.4
1027
Tumor
0.4
124
Normal
0.4
465
Tumor
0.4
395
Tumor
0.4
331
Tumor
0.4
537
Tumor
0.4
112
Tumor
0.4
435
Tumor
0.4
777
Tumor
0.4
427
Tumor
0.3
746
Normal
0.3
865
Tumor
0.3
1025
Tumor
0.3
351
Tumor
0.3
463
Tumor
0.3
257
Tumor
0.3
557
Tumor
0.3
915
Tumor
0.3
145
Tumor
0.2
1021
Tumor
0.2
221
Tumor
0.2
367
Tumor
0.2
313
Tumor
0.2
921
Tumor
0.2
478
Normal
0.2
186
Normal
0.2
481
Tumor
0.2
1043
Tumor
0.2
515
Tumor
0.2
965
Tumor
0.2
923
Tumor
0.2
661
Tumor
0.2
172
Normal
0.2
1045
Tumor
0.2
697
Tumor
0.1
937
Tumor
0.1
232
Normal
0.1
482
Normal
0.1
967
Tumor
0.1
258
Normal
0.1
1015
Tumor
0.1
472
Normal
0.1
743
Tumor
0.1
436
Normal
0.1
723
Tumor
0.1
525
Tumor
0.1
483
Tumor
0.1
387
Tumor
0.1
461
Tumor
0.1
977
Tumor
0.1
493
Tumor
0.1
162
Normal
0.1
857
Tumor
0.1
262
Normal
0.1
957
Tumor
0.1
663
Tumor
0.1
715
Tumor
0.0
188
Normal
0.0
742
Normal
0.0
671
Tumor
0.0
272
Normal
0.0
487
Tumor
0.0
728
Normal
0.0
911
Tumor
0.0
721
Tumor
0.0
414
Normal
0.0
568
Normal
0.0
983
Tumor
0.0
148
Normal
0.0
362
Normal
0.0
464
Normal
0.0
217
Tumor
0.0
452
Normal
0.0
137
Tumor
0.0
474
Normal
0.0
722
Normal
0.0
738
Normal
0.0
785
Tumor
0.0
1042
Normal
0.0
421
Tumor
0.0
213
Tumor
0.0
695
Tumor
0.0
434
Normal
0.0
131
Tumor
0.0
627
Tumor
-0.1
817
Tumor
-0.1
648
Normal
-0.1
383
Tumor
-0.1
571
Tumor
-0.1
462
Normal
-0.1
1026
Normal
-0.1
527
Tumor
-0.1
368
Normal
-0.1
428
Normal
-0.1
413
Tumor
-0.1
926
Normal
-0.1
446
Normal
-0.1
862
Normal
-0.1
497
Tumor
-0.1
514
Normal
-0.1
564
Normal
-0.1
384
Normal
-0.1
922
Normal
-0.1
268
Normal
-0.1
425
Tumor
-0.1
916
Normal
-0.1
456
Normal
-0.1
445
Tumor
-0.1
432
Normal
-0.1
433
Tumor
-0.1
185
Tumor
-0.1
356
Normal
-0.1
393
Tumor
-0.1
737
Tumor
-0.1
228
Normal
-0.1
366
Normal
-0.1
314
Normal
-0.1
471
Tumor
-0.1
227
Tumor
-0.1
867
Tumor
-0.1
873
Tumor
-0.1
391
Tumor
-0.1
1028
Normal
-0.1
278
Normal
-0.1
468
Normal
-0.1
714
Normal
-0.1
328
Normal
-0.1
664
Normal
-0.1
488
Normal
-0.1
755
Tumor
-0.1
727
Tumor
-0.2
297
Tumor
-0.2
686
Normal
-0.2
778
Normal
-0.2
261
Tumor
-0.2
572
Normal
-0.2
918
Normal
-0.2
558
Normal
-0.2
1022
Normal
-0.2
617
Tumor
-0.2
618
Normal
-0.2
357
Tumor
-0.2
924
Normal
-0.2
424
Normal
-0.2
363
Tumor
-0.2
1031
Tumor
-0.2
365
Tumor
-0.2
536
Normal
-0.2
376
Normal
-0.2
187
Tumor
-0.2
358
Normal
-0.2
344
Normal
-0.2
966
Normal
-0.2
196
Normal
-0.2
953
Tumor
-0.2
455
Tumor
-0.2
447
Tumor
-0.2
1032
Normal
-0.2
214
Normal
-0.2
142
Normal
-0.2
222
Normal
-0.2
286
Normal
-0.2
298
Normal
-0.2
423
Tumor
-0.2
466
Normal
-0.2
285
Tumor
-0.2
955
Tumor
-0.2
212
Normal
-0.2
364
Normal
-0.2
1016
Normal
-0.2
981
Tumor
-0.2
666
Normal
-0.3
311
Tumor
-0.3
125
Tumor
-0.3
642
Normal
-0.3
882
Normal
-0.3
716
Normal
-0.3
574
Normal
-0.3
786
Normal
-0.3
312
Normal
-0.3
744
Normal
-0.3
868
Normal
-0.3
696
Normal
-0.3
422
Normal
-0.3
218
Normal
-0.3
662
Normal
-0.3
982
Normal
-0.3
426
Normal
-0.3
951
Tumor
-0.3
968
Normal
-0.3
518
Normal
-0.3
863
Tumor
-0.3
864
Normal
-0.3
498
Normal
-0.3
277
Tumor
-0.3
756
Normal
-0.3
448
Normal
-0.3
938
Normal
-0.3
672
Normal
-0.3
523
Tumor
-0.3
866
Normal
-0.3
814
Normal
-0.3
641
Tumor
-0.3
1044
Normal
-0.3
535
Tumor
-0.3
353
Tumor
-0.4
375
Tumor
-0.4
284
Normal
-0.4
484
Normal
-0.4
494
Normal
-0.4
352
Normal
-0.4
858
Normal
-0.4
283
Tumor
-0.4
978
Normal
-0.4
665
Tumor
-0.4
354
Normal
-0.4
135
Tumor
-0.4
563
Tumor
-0.4
411
Tumor
-0.4
517
Tumor
-0.4
412
Normal
-0.4
813
Tumor
-0.4
914
Normal
-0.4
141
Tumor
-0.4
467
Tumor
-0.4
874
Normal
-0.4
823
Tumor
-0.4
342
Normal
-0.4
526
Normal
-0.4
136
Normal
-0.4
416
Normal
-0.4
881
Tumor
-0.4
132
Normal
-0.4
636
Normal
-0.4
883
Tumor
-0.4
332
Normal
-0.4
138
Normal
-0.5
386
Normal
-0.5
816
Normal
-0.5
616
Normal
-0.5
444
Normal
-0.5
524
Normal
-0.5
861
Tumor
-0.5
912
Normal
-0.5
385
Tumor
-0.5
943
Tumor
-0.5
546
Normal
-0.5
1013
Tumor
-0.5
878
Normal
-0.5
741
Tumor
-0.5
884
Normal
-0.5
698
Normal
-0.5
224
Normal
-0.5
528
Normal
-0.6
545
Tumor
-0.6
1014
Normal
-0.6
431
Tumor
-0.6
191
Tumor
-0.6
917
Tumor
-0.6
392
Normal
-0.6
534
Normal
-0.6
952
Normal
-0.6
146
Normal
-0.6
355
Tumor
-0.6
944
Normal
-0.6
615
Tumor
-0.6
975
Tumor
-0.6
394
Normal
-0.6
343
Tumor
-0.7
984
Normal
-0.7
388
Normal
-0.7
195
Tumor
-0.7
192
Normal
-0.7
877
Tumor
-0.7
516
Normal
-0.7
958
Normal
-0.7
491
Tumor
-0.7
628
Normal
-0.7
396
Normal
-0.7
492
Normal
-0.7
473
Tumor
-0.7
976
Normal
-0.7
954
Normal
-0.7
852
Normal
-0.8
824
Normal
-0.8
964
Normal
-0.8
818
Normal
-0.8
956
Normal
-0.8
1046
Normal
-0.8
538
Normal
-0.9
554
Normal
-0.9
553
Tumor
-0.9
415
Tumor
-1.0
211
Tumor
-1.0
963
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.