We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SGSM3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
49.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
36.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
35.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SGSM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
178.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
84.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
78.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
74.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
52.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
41.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
191
Tumor
1.3
366
Normal
1.0
213
Tumor
1.0
368
Normal
1.0
135
Tumor
0.9
385
Tumor
0.9
745
Tumor
0.8
331
Tumor
0.8
443
Tumor
0.8
384
Normal
0.8
376
Normal
0.7
937
Tumor
0.7
641
Tumor
0.7
743
Tumor
0.7
1025
Tumor
0.7
627
Tumor
0.6
615
Tumor
0.6
571
Tumor
0.6
917
Tumor
0.6
311
Tumor
0.6
123
Tumor
0.6
362
Normal
0.5
727
Tumor
0.5
471
Tumor
0.5
967
Tumor
0.5
865
Tumor
0.5
1021
Tumor
0.5
968
Normal
0.5
328
Normal
0.5
367
Tumor
0.5
414
Normal
0.5
395
Tumor
0.5
572
Normal
0.5
223
Tumor
0.5
195
Tumor
0.5
515
Tumor
0.5
642
Normal
0.5
545
Tumor
0.5
616
Normal
0.5
976
Normal
0.5
958
Normal
0.5
446
Normal
0.4
361
Tumor
0.4
444
Normal
0.4
332
Normal
0.4
884
Normal
0.4
964
Normal
0.4
424
Normal
0.4
428
Normal
0.4
426
Normal
0.4
921
Tumor
0.4
573
Tumor
0.4
365
Tumor
0.4
922
Normal
0.4
422
Normal
0.4
192
Normal
0.4
923
Tumor
0.4
314
Normal
0.4
434
Normal
0.4
517
Tumor
0.4
221
Tumor
0.4
127
Tumor
0.4
983
Tumor
0.3
558
Normal
0.3
914
Normal
0.3
1016
Normal
0.3
375
Tumor
0.3
423
Tumor
0.3
432
Normal
0.3
286
Normal
0.3
912
Normal
0.3
915
Tumor
0.3
722
Normal
0.3
436
Normal
0.3
925
Tumor
0.3
1014
Normal
0.3
113
Tumor
0.3
982
Normal
0.3
228
Normal
0.3
285
Tumor
0.3
984
Normal
0.2
421
Tumor
0.2
564
Normal
0.2
425
Tumor
0.2
981
Tumor
0.2
618
Normal
0.2
416
Normal
0.2
926
Normal
0.2
916
Normal
0.2
863
Tumor
0.2
447
Tumor
0.2
298
Normal
0.2
918
Normal
0.2
393
Tumor
0.2
356
Normal
0.2
951
Tumor
0.2
427
Tumor
0.2
574
Normal
0.2
568
Normal
0.2
433
Tumor
0.2
494
Normal
0.2
445
Tumor
0.2
312
Normal
0.2
111
Normal
0.2
525
Tumor
0.2
513
Tumor
0.1
978
Normal
0.1
498
Normal
0.1
271
Tumor
0.1
283
Tumor
0.1
297
Tumor
0.1
327
Tumor
0.1
488
Normal
0.1
482
Normal
0.1
126
Normal
0.1
714
Normal
0.1
145
Tumor
0.1
882
Normal
0.1
364
Normal
0.1
224
Normal
0.1
387
Tumor
0.1
1027
Tumor
0.1
278
Normal
0.1
966
Normal
0.1
878
Normal
0.1
742
Normal
0.1
284
Normal
0.1
473
Tumor
0.1
527
Tumor
0.1
484
Normal
0.1
435
Tumor
0.1
881
Tumor
0.1
628
Normal
0.1
257
Tumor
0.1
128
Normal
0.1
883
Tumor
0.1
535
Tumor
0.0
461
Tumor
0.0
737
Tumor
0.0
431
Tumor
0.0
1045
Tumor
0.0
413
Tumor
0.0
944
Normal
0.0
728
Normal
0.0
524
Normal
0.0
666
Normal
0.0
536
Normal
0.0
514
Normal
0.0
546
Normal
0.0
516
Normal
0.0
716
Normal
0.0
686
Normal
0.0
756
Normal
0.0
523
Tumor
0.0
956
Normal
0.0
1044
Normal
0.0
146
Normal
0.0
755
Tumor
0.0
563
Tumor
0.0
786
Normal
0.0
474
Normal
0.0
698
Normal
0.0
697
Tumor
0.0
617
Tumor
0.0
477
Tumor
0.0
938
Normal
0.0
671
Tumor
0.0
383
Tumor
0.0
723
Tumor
0.0
277
Tumor
0.0
696
Normal
0.0
943
Tumor
0.0
954
Normal
0.0
478
Normal
0.0
462
Normal
0.0
778
Normal
0.0
636
Normal
0.0
534
Normal
0.0
1046
Normal
0.0
1026
Normal
0.0
483
Tumor
0.0
665
Tumor
0.0
862
Normal
0.0
124
Normal
-0.1
857
Tumor
-0.1
528
Normal
-0.1
868
Normal
-0.1
924
Normal
-0.1
817
Tumor
-0.1
744
Normal
-0.1
114
Normal
-0.1
952
Normal
-0.1
212
Normal
-0.1
913
Tumor
-0.1
131
Tumor
-0.1
355
Tumor
-0.1
685
Tumor
-0.1
713
Tumor
-0.1
412
Normal
-0.1
738
Normal
-0.1
874
Normal
-0.1
1031
Tumor
-0.1
823
Tumor
-0.1
818
Normal
-0.1
112
Tumor
-0.1
262
Normal
-0.1
141
Tumor
-0.1
448
Normal
-0.1
965
Tumor
-0.1
955
Tumor
-0.1
526
Normal
-0.2
664
Normal
-0.2
138
Normal
-0.2
313
Tumor
-0.2
415
Tumor
-0.2
518
Normal
-0.2
261
Tumor
-0.2
567
Tumor
-0.2
142
Normal
-0.2
557
Tumor
-0.2
267
Tumor
-0.2
386
Normal
-0.2
672
Normal
-0.2
814
Normal
-0.2
363
Tumor
-0.2
715
Tumor
-0.2
214
Normal
-0.2
866
Normal
-0.2
137
Tumor
-0.2
695
Tumor
-0.2
538
Normal
-0.2
272
Normal
-0.2
877
Tumor
-0.2
648
Normal
-0.2
746
Normal
-0.2
867
Tumor
-0.2
533
Tumor
-0.2
481
Tumor
-0.2
1041
Tumor
-0.2
662
Normal
-0.2
911
Tumor
-0.3
217
Tumor
-0.3
258
Normal
-0.3
953
Tumor
-0.3
211
Tumor
-0.3
777
Tumor
-0.3
136
Normal
-0.3
724
Normal
-0.3
218
Normal
-0.3
721
Tumor
-0.3
858
Normal
-0.3
873
Tumor
-0.3
663
Tumor
-0.3
232
Normal
-0.3
824
Normal
-0.3
852
Normal
-0.3
741
Tumor
-0.3
492
Normal
-0.3
472
Normal
-0.3
963
Tumor
-0.3
231
Tumor
-0.3
977
Tumor
-0.3
815
Tumor
-0.3
1015
Tumor
-0.3
1043
Tumor
-0.3
647
Tumor
-0.3
554
Normal
-0.3
268
Normal
-0.3
635
Tumor
-0.4
864
Normal
-0.4
391
Tumor
-0.4
227
Tumor
-0.4
487
Tumor
-0.4
957
Tumor
-0.4
132
Normal
-0.4
1028
Normal
-0.4
816
Normal
-0.4
392
Normal
-0.4
491
Tumor
-0.5
975
Tumor
-0.5
493
Tumor
-0.5
1042
Normal
-0.5
1013
Tumor
-0.5
396
Normal
-0.5
861
Tumor
-0.5
497
Tumor
-0.5
1022
Normal
-0.5
196
Normal
-0.5
411
Tumor
-0.6
537
Tumor
-0.6
785
Tumor
-0.6
388
Normal
-0.6
851
Tumor
-0.6
222
Normal
-0.6
553
Tumor
-0.6
394
Normal
-0.7
661
Tumor
-0.7
1032
Normal
-0.7
125
Tumor
-0.8
813
Tumor
-1.1
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
